Wall clock time and date at job start Mon Mar 30 2020 03:34:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17405 * 1
3 3 C 1.47198 * 179.97438 * 2 1
4 4 N 1.46500 * 109.47068 * 123.24124 * 3 2 1
5 5 C 1.37099 * 119.99599 * 96.21266 * 4 3 2
6 6 H 1.08003 * 119.99351 * 159.16259 * 5 4 3
7 7 C 1.38942 * 120.00284 * 339.15287 * 5 4 3
8 8 N 1.31408 * 120.00409 * 350.04063 * 7 5 4
9 9 Si 1.86806 * 119.99958 * 170.03358 * 7 5 4
10 10 H 1.48505 * 109.46948 * 90.00532 * 9 7 5
11 11 H 1.48501 * 109.47239 * 210.00374 * 9 7 5
12 12 H 1.48497 * 109.47235 * 330.00502 * 9 7 5
13 13 C 1.34774 * 119.99958 * 276.20887 * 4 3 2
14 14 O 1.21293 * 119.99909 * 186.32056 * 13 4 3
15 15 C 1.50695 * 120.00032 * 6.32331 * 13 4 3
16 16 H 1.08999 * 110.54172 * 34.14766 * 15 13 4
17 17 C 1.54892 * 110.48900 * 156.76588 * 15 13 4
18 18 C 1.54882 * 102.91739 * 156.52543 * 17 15 13
19 19 C 1.54471 * 104.10381 * 322.30232 * 18 17 15
20 20 H 1.08998 * 110.12147 * 142.72865 * 19 18 17
21 21 N 1.46899 * 109.89710 * 264.07942 * 19 18 17
22 22 C 1.53876 * 106.68337 * 23.33999 * 19 18 17
23 23 H 4.40641 * 5.51460 * 179.97438 * 4 1 2
24 24 H 1.08998 * 109.46979 * 3.23910 * 3 2 1
25 25 H 1.09004 * 109.46984 * 243.24337 * 3 2 1
26 26 H 0.96996 * 120.00897 * 179.97438 * 8 7 5
27 27 H 1.09000 * 110.75250 * 274.93338 * 17 15 13
28 28 H 1.09005 * 110.75166 * 38.11723 * 17 15 13
29 29 H 1.09000 * 110.48737 * 80.83021 * 18 17 15
30 30 H 1.09001 * 110.48916 * 203.47353 * 18 17 15
31 31 H 1.00900 * 111.00374 * 297.19337 * 21 19 18
32 32 H 1.00902 * 111.00016 * 61.14226 * 21 19 18
33 33 H 1.08998 * 110.03247 * 240.87666 * 22 19 18
34 34 H 1.08995 * 110.03054 * 119.44514 * 22 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1340 0.7580 -1.1552
5 6 3.4830 2.0762 -1.0128
6 1 4.1401 2.5415 -1.7326
7 6 2.9913 2.8134 0.0573
8 7 2.0444 2.3140 0.8194
9 14 3.6763 4.5145 0.4129
10 1 2.8871 5.5309 -0.3285
11 1 3.5910 4.7879 1.8700
12 1 5.0953 4.5772 -0.0203
13 6 3.2399 0.1589 -2.3578
14 8 3.7501 0.7491 -3.2865
15 6 2.7242 -1.2442 -2.5487
16 1 1.8375 -1.4122 -1.9375
17 6 2.4112 -1.5082 -4.0425
18 6 2.5025 -3.0507 -4.1479
19 6 3.6785 -3.4226 -3.2179
20 1 3.4640 -4.3558 -2.6971
21 7 4.9132 -3.5569 -4.0023
22 6 3.8203 -2.2737 -2.2042
23 1 -1.0501 -0.0003 0.0001
24 1 3.0098 -1.0252 -0.0581
25 1 3.0091 0.4635 0.9177
26 1 1.7013 2.8284 1.5667
27 1 1.4085 -1.1625 -4.2939
28 1 3.1541 -1.0325 -4.6827
29 1 1.5797 -3.5125 -3.7969
30 1 2.7141 -3.3511 -5.1742
31 1 4.8360 -4.3071 -4.6726
32 1 5.1485 -2.6879 -4.4579
33 1 4.8050 -1.8152 -2.2949
34 1 3.6747 -2.6493 -1.1914
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000300856063.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:34:24
Heat of formation + Delta-G solvation = 1.319473 kcal
Electronic energy + Delta-G solvation = -17140.144181 eV
Core-core repulsion = 14459.603096 eV
Total energy + Delta-G solvation = -2680.541084 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.03345 -38.72855 -37.03365 -34.11649 -33.14296 -33.00315 -29.97624 -28.29526
-27.83265 -26.30552 -22.82692 -20.92517 -20.18323 -19.66016 -18.56297 -18.02531
-17.13027 -16.73047 -16.17947 -15.90148 -15.40098 -15.34511 -14.57534 -14.38321
-14.07183 -13.87132 -13.38572 -12.90831 -12.86609 -12.64937 -12.51689 -12.23661
-12.15624 -12.01988 -11.78604 -11.55982 -11.25602 -11.01839 -10.58553 -10.27526
-9.78870 -9.53714 -8.27980 -5.97368 1.35544 1.40085 1.52136 1.90560
2.13038 2.31657 2.39920 3.06139 3.16532 3.57265 3.63674 3.86141
3.89548 4.08418 4.33580 4.47834 4.56909 4.58749 4.62545 4.68722
4.74948 4.93126 5.04649 5.07154 5.24753 5.32707 5.38336 5.44156
5.45552 6.08326 6.27954 6.46784 6.67738 7.13733 7.15527 7.43659
7.99615 8.68513
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033035 B = 0.007741 C = 0.006914
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 847.373130 B = 3616.015901 C = 4048.661088
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.252 4.252
2 C -0.148 4.148
3 C 0.236 3.764
4 N -0.456 5.456
5 C -0.349 4.349
6 H 0.073 0.927
7 C -0.001 4.001
8 N -0.881 5.881
9 Si 0.987 3.013
10 H -0.280 1.280
11 H -0.267 1.267
12 H -0.272 1.272
13 C 0.452 3.548
14 O -0.629 6.629
15 C -0.102 4.102
16 H 0.091 0.909
17 C -0.106 4.106
18 C -0.143 4.143
19 C 0.096 3.904
20 H 0.103 0.897
21 N -0.848 5.848
22 C -0.102 4.102
23 H 0.234 0.766
24 H 0.088 0.912
25 H 0.098 0.902
26 H 0.271 0.729
27 H 0.058 0.942
28 H 0.056 0.944
29 H 0.085 0.915
30 H 0.081 0.919
31 H 0.351 0.649
32 H 0.338 0.662
33 H 0.052 0.948
34 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.513 -11.481 -2.412 11.829
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.270 4.270
2 C -0.149 4.149
3 C 0.113 3.887
4 N -0.174 5.174
5 C -0.476 4.476
6 H 0.091 0.909
7 C -0.203 4.203
8 N -0.519 5.519
9 Si 0.811 3.189
10 H -0.206 1.206
11 H -0.191 1.191
12 H -0.197 1.197
13 C 0.242 3.758
14 O -0.516 6.516
15 C -0.124 4.124
16 H 0.109 0.891
17 C -0.144 4.144
18 C -0.183 4.183
19 C -0.016 4.016
20 H 0.121 0.879
21 N -0.378 5.378
22 C -0.141 4.141
23 H 0.250 0.750
24 H 0.106 0.894
25 H 0.116 0.884
26 H 0.081 0.919
27 H 0.077 0.923
28 H 0.075 0.925
29 H 0.104 0.896
30 H 0.099 0.901
31 H 0.165 0.835
32 H 0.151 0.849
33 H 0.071 0.929
34 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -0.970 -11.290 -1.943 11.497
hybrid contribution -0.627 1.713 -0.503 1.892
sum -1.597 -9.577 -2.446 10.013
Atomic orbital electron populations
1.25147 0.96328 1.04208 1.01342 1.23463 0.94954 0.97115 0.99389
1.18369 0.84654 0.94607 0.91036 1.43861 1.56296 1.10119 1.07120
1.19616 1.28798 0.87179 1.12037 0.90948 1.25999 0.95296 1.02798
0.96183 1.70077 1.24736 1.38969 1.18155 0.85031 0.78471 0.77583
0.77794 1.20621 1.19149 1.19701 1.20990 0.82953 0.89995 0.81820
1.90445 1.50277 1.68738 1.42116 1.22078 0.99750 0.91008 0.99541
0.89122 1.22320 1.00963 0.97388 0.93694 1.23207 1.00695 0.93699
1.00657 1.22059 0.87932 0.98015 0.93546 0.87875 1.58962 1.34942
1.11190 1.32728 1.22159 0.97032 0.94482 1.00397 0.74983 0.89399
0.88403 0.91855 0.92271 0.92477 0.89610 0.90054 0.83500 0.84921
0.92920 0.89684
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.25 -9.94 19.25 74.32 1.43 -8.51 16
2 C -0.15 -6.53 10.21 31.12 0.32 -6.21 16
3 C 0.24 10.65 4.81 84.57 0.41 11.06 16
4 N -0.46 -23.92 2.60 -645.43 -1.68 -25.60 16
5 C -0.35 -20.09 9.36 84.04 0.79 -19.30 16
6 H 0.07 4.48 7.33 -2.91 -0.02 4.46 16
7 C 0.00 -0.04 5.13 84.93 0.44 0.40 16
8 N -0.88 -46.27 9.00 21.66 0.19 -46.08 16
9 Si 0.99 43.06 29.56 68.60 2.03 45.08 16
10 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16
11 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16
12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
13 C 0.45 22.68 6.59 87.66 0.58 23.26 16
14 O -0.63 -36.30 15.46 -3.07 -0.05 -36.35 16
15 C -0.10 -3.79 2.30 -10.46 -0.02 -3.82 16
16 H 0.09 3.30 6.23 -2.39 -0.01 3.28 16
17 C -0.11 -3.46 6.15 31.88 0.20 -3.26 16
18 C -0.14 -3.24 6.53 31.74 0.21 -3.04 16
19 C 0.10 2.26 4.05 45.71 0.18 2.45 16
20 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16
21 N -0.85 -19.27 9.11 -165.38 -1.51 -20.77 16
22 C -0.10 -3.16 5.62 31.32 0.18 -2.98 16
23 H 0.23 7.06 7.80 -4.41 -0.03 7.02 16
24 H 0.09 3.32 6.00 -2.39 -0.01 3.30 16
25 H 0.10 4.76 6.29 -2.38 -0.02 4.75 16
26 H 0.27 13.51 8.31 -92.71 -0.77 12.74 16
27 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
28 H 0.06 2.13 7.25 -2.38 -0.02 2.12 16
29 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16
30 H 0.08 1.57 8.04 -2.39 -0.02 1.55 16
31 H 0.35 5.99 9.06 -89.69 -0.81 5.18 16
32 H 0.34 8.61 8.97 -89.69 -0.80 7.80 16
33 H 0.05 1.90 7.59 -2.39 -0.02 1.89 16
34 H 0.08 2.33 7.31 -2.39 -0.02 2.31 16
Total: -1.00 -67.81 281.66 3.19 -64.62
By element:
Atomic # 1 Polarization: 29.55 SS G_CDS: -0.50 Total: 29.05 kcal
Atomic # 6 Polarization: -14.66 SS G_CDS: 4.70 Total: -9.96 kcal
Atomic # 7 Polarization: -89.46 SS G_CDS: -2.99 Total: -92.45 kcal
Atomic # 8 Polarization: -36.30 SS G_CDS: -0.05 Total: -36.35 kcal
Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal
Total: -67.81 3.19 -64.62 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300856063.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.944 kcal
(2) G-P(sol) polarization free energy of solvation -67.812 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.868 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.625 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.319 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds