Wall clock time and date at job start Mon Mar 30 2020 03:38:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17395 * 1
3 3 C 1.47205 * 179.97438 * 2 1
4 4 N 1.46497 * 109.47097 * 7.07922 * 3 2 1
5 5 C 1.37100 * 120.00077 * 96.48442 * 4 3 2
6 6 H 1.08001 * 119.99906 * 158.69565 * 5 4 3
7 7 C 1.38954 * 119.99923 * 338.69426 * 5 4 3
8 8 N 1.31415 * 119.99578 * 349.02414 * 7 5 4
9 9 Si 1.86796 * 119.99823 * 169.02564 * 7 5 4
10 10 H 1.48501 * 109.46698 * 179.97438 * 9 7 5
11 11 H 1.48492 * 109.47270 * 300.00008 * 9 7 5
12 12 H 1.48505 * 109.47165 * 60.00506 * 9 7 5
13 13 C 1.34779 * 119.99937 * 276.47749 * 4 3 2
14 14 O 1.21296 * 119.99604 * 185.57959 * 13 4 3
15 15 C 1.50695 * 120.00152 * 5.59122 * 13 4 3
16 16 H 1.09000 * 110.62928 * 34.52379 * 15 13 4
17 17 C 1.54319 * 110.70426 * 271.42562 * 15 13 4
18 18 N 1.47441 * 107.23252 * 219.33221 * 17 15 13
19 19 C 1.47845 * 108.56613 * 359.00767 * 18 17 15
20 20 C 1.54905 * 104.79742 * 24.09749 * 19 18 17
21 21 H 1.09001 * 110.98842 * 81.01895 * 20 19 18
22 22 C 1.53000 * 110.98861 * 204.83969 * 20 19 18
23 23 H 4.40640 * 5.51439 * 179.97438 * 4 1 2
24 24 H 1.09003 * 109.47072 * 247.07682 * 3 2 1
25 25 H 1.08998 * 109.46907 * 127.08108 * 3 2 1
26 26 H 0.97005 * 119.99529 * 179.97438 * 8 7 5
27 27 H 1.09004 * 109.88745 * 338.73755 * 17 15 13
28 28 H 1.09000 * 109.89155 * 99.92310 * 17 15 13
29 29 H 1.00895 * 111.00217 * 236.73402 * 18 17 15
30 30 H 1.09008 * 110.37268 * 142.92882 * 19 18 17
31 31 H 1.08997 * 110.37331 * 265.15176 * 19 18 17
32 32 H 1.09000 * 109.46834 * 172.26660 * 22 20 19
33 33 H 1.08995 * 109.46857 * 292.26435 * 22 20 19
34 34 H 1.08991 * 109.47137 * 52.26817 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1739 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1349 -1.3698 -0.1702
5 6 3.4900 -1.8213 -1.4151
6 1 4.1537 -2.6676 -1.5135
7 6 2.9961 -1.1900 -2.5501
8 7 2.0285 -0.3073 -2.4424
9 14 3.7074 -1.5961 -4.2289
10 1 3.0129 -0.7939 -5.2679
11 1 5.1573 -1.2761 -4.2428
12 1 3.5167 -3.0416 -4.5108
13 6 3.2358 -2.1867 0.8970
14 8 3.7346 -3.2856 0.7745
15 6 2.7286 -1.7351 2.2423
16 1 1.8438 -1.1088 2.1286
17 6 3.8320 -0.9848 3.0175
18 7 3.7286 -1.3940 4.4302
19 6 2.6006 -2.3402 4.5648
20 6 2.4289 -2.9545 3.1532
21 1 3.1502 -3.7542 2.9850
22 6 0.9987 -3.4564 2.9442
23 1 -1.0498 -0.0004 0.0001
24 1 3.0091 0.4011 0.9465
25 1 3.0090 0.6204 -0.8199
26 1 1.6839 0.1337 -3.2347
27 1 4.8116 -1.2560 2.6237
28 1 3.6800 0.0910 2.9310
29 1 3.6022 -0.5929 5.0304
30 1 2.8417 -3.1174 5.2902
31 1 1.6953 -1.8115 4.8632
32 1 0.8672 -3.7560 1.9044
33 1 0.8150 -4.3114 3.5947
34 1 0.2952 -2.6593 3.1843
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300858763.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:35
Heat of formation + Delta-G solvation = 31.694133 kcal
Electronic energy + Delta-G solvation = -17316.198584 eV
Core-core repulsion = 14636.974643 eV
Total energy + Delta-G solvation = -2679.223940 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.49370 -37.25992 -35.11420 -32.16408 -31.77987 -31.20295 -29.28066 -26.42016
-25.49323 -24.54697 -21.66983 -20.32854 -18.57143 -17.86516 -16.81985 -16.28497
-15.96765 -15.10655 -14.31319 -14.09249 -13.80370 -13.12987 -12.99147 -12.93340
-12.46161 -12.17047 -12.06237 -11.80630 -11.70947 -11.41198 -11.00630 -10.62539
-10.54922 -10.47638 -10.30292 -10.15475 -9.41341 -9.27683 -8.85793 -8.42220
-8.24771 -7.83106 -6.29521 -3.90443 3.17783 3.24222 3.27553 3.66360
3.87136 4.03684 4.17541 4.43040 4.81463 4.94083 5.03497 5.22271
5.41646 5.45245 5.54535 5.64051 5.83931 5.88252 5.93687 6.01891
6.11916 6.24756 6.38685 6.40977 6.53739 6.77100 6.82395 7.01204
7.04347 7.52429 7.55155 8.07546 8.43856 8.78914 9.13722 9.35767
9.91089 10.70243
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031274 B = 0.008296 C = 0.007678
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 895.094502 B = 3374.489284 C = 3645.866560
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.269 4.269
2 C -0.106 4.106
3 C 0.233 3.767
4 N -0.443 5.443
5 C -0.310 4.310
6 H 0.102 0.898
7 C 0.029 3.971
8 N -0.875 5.875
9 Si 0.927 3.073
10 H -0.285 1.285
11 H -0.274 1.274
12 H -0.274 1.274
13 C 0.468 3.532
14 O -0.578 6.578
15 C -0.124 4.124
16 H 0.088 0.912
17 C 0.060 3.940
18 N -0.683 5.683
19 C 0.050 3.950
20 C -0.082 4.082
21 H 0.098 0.902
22 C -0.138 4.138
23 H 0.198 0.802
24 H 0.055 0.945
25 H 0.117 0.883
26 H 0.268 0.732
27 H 0.079 0.921
28 H 0.053 0.947
29 H 0.334 0.666
30 H 0.076 0.924
31 H 0.040 0.960
32 H 0.061 0.939
33 H 0.053 0.947
34 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.871 2.664 8.964 9.537
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.288 4.288
2 C -0.108 4.108
3 C 0.109 3.891
4 N -0.161 5.161
5 C -0.437 4.437
6 H 0.120 0.880
7 C -0.174 4.174
8 N -0.514 5.514
9 Si 0.754 3.246
10 H -0.210 1.210
11 H -0.199 1.199
12 H -0.199 1.199
13 C 0.256 3.744
14 O -0.461 6.461
15 C -0.146 4.146
16 H 0.106 0.894
17 C -0.069 4.069
18 N -0.311 5.311
19 C -0.079 4.079
20 C -0.101 4.101
21 H 0.116 0.884
22 C -0.195 4.195
23 H 0.215 0.785
24 H 0.073 0.927
25 H 0.135 0.865
26 H 0.079 0.921
27 H 0.097 0.903
28 H 0.071 0.929
29 H 0.149 0.851
30 H 0.094 0.906
31 H 0.059 0.941
32 H 0.080 0.920
33 H 0.072 0.928
34 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -1.172 1.752 8.699 8.951
hybrid contribution -0.986 0.667 -1.160 1.662
sum -2.158 2.419 7.539 8.207
Atomic orbital electron populations
1.24256 0.95371 1.02274 1.06918 1.23241 0.94395 0.98235 0.94923
1.18353 0.84116 0.86261 1.00342 1.43636 1.56224 1.09358 1.06927
1.19645 1.26974 1.16248 0.80861 0.88048 1.25338 0.95283 0.96984
0.99831 1.69967 1.23852 1.27432 1.30105 0.85976 0.78942 0.78624
0.81031 1.21014 1.19898 1.19929 1.19780 0.84068 0.85222 0.85342
1.90507 1.48431 1.21891 1.85279 1.22572 0.99116 0.98040 0.94887
0.89415 1.22541 0.99373 0.97451 0.87543 1.61847 1.44266 1.18392
1.06629 1.22915 0.91665 0.95642 0.97710 1.22153 0.98252 0.97541
0.92202 0.88372 1.21666 0.95135 1.00408 1.02335 0.78485 0.92674
0.86529 0.92107 0.90251 0.92872 0.85074 0.90576 0.94133 0.92008
0.92761 0.93132
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.27 -5.54 19.25 29.55 0.57 -4.97 16
2 C -0.11 -2.37 10.20 -37.12 -0.38 -2.74 16
3 C 0.23 5.15 4.80 -6.83 -0.03 5.12 16
4 N -0.44 -11.17 2.60 -117.93 -0.31 -11.48 16
5 C -0.31 -8.51 9.35 -14.93 -0.14 -8.65 16
6 H 0.10 2.93 7.35 -52.49 -0.39 2.54 16
7 C 0.03 0.74 5.10 -17.46 -0.09 0.65 16
8 N -0.87 -22.80 9.07 55.50 0.50 -22.29 16
9 Si 0.93 20.66 29.57 -169.99 -5.03 15.64 16
10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16
11 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16
12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16
13 C 0.47 11.36 6.61 -10.99 -0.07 11.29 16
14 O -0.58 -15.97 15.45 5.54 0.09 -15.88 16
15 C -0.12 -2.35 1.82 -89.95 -0.16 -2.51 16
16 H 0.09 1.66 6.14 -51.93 -0.32 1.34 16
17 C 0.06 1.00 6.68 -2.84 -0.02 0.98 16
18 N -0.68 -9.86 7.39 -110.79 -0.82 -10.68 16
19 C 0.05 0.69 7.04 -2.30 -0.02 0.68 16
20 C -0.08 -1.42 2.92 -88.48 -0.26 -1.68 16
21 H 0.10 1.95 7.22 -51.93 -0.37 1.57 16
22 C -0.14 -2.17 9.31 37.16 0.35 -1.83 16
23 H 0.20 3.31 7.80 -54.10 -0.42 2.89 16
24 H 0.06 1.04 6.07 -51.93 -0.32 0.72 16
25 H 0.12 2.74 6.34 -51.93 -0.33 2.41 16
26 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16
27 H 0.08 1.46 7.81 -51.93 -0.41 1.06 16
28 H 0.05 0.77 7.39 -51.93 -0.38 0.38 16
29 H 0.33 3.91 8.91 -39.29 -0.35 3.56 16
30 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16
31 H 0.04 0.50 7.99 -51.93 -0.41 0.09 16
32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
34 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16
LS Contribution 282.32 15.07 4.25 4.25
Total: -1.00 -30.40 282.32 -6.09 -36.48
By element:
Atomic # 1 Polarization: 12.14 SS G_CDS: -4.52 Total: 7.61 kcal
Atomic # 6 Polarization: -3.40 SS G_CDS: -0.26 Total: -3.66 kcal
Atomic # 7 Polarization: -43.83 SS G_CDS: -0.62 Total: -44.45 kcal
Atomic # 8 Polarization: -15.97 SS G_CDS: 0.09 Total: -15.88 kcal
Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.64 kcal
Total LS contribution 4.25 Total: 4.25 kcal
Total: -30.40 -6.09 -36.48 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300858763.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.177 kcal
(2) G-P(sol) polarization free energy of solvation -30.396 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.781 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.483 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.694 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds