Wall clock time and date at job start Mon Mar 30 2020 03:38:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17395 * 1
3 3 C 1.47205 * 179.97438 * 2 1
4 4 N 1.46497 * 109.47097 * 7.07922 * 3 2 1
5 5 C 1.37100 * 120.00077 * 96.48442 * 4 3 2
6 6 H 1.08001 * 119.99906 * 158.69565 * 5 4 3
7 7 C 1.38954 * 119.99923 * 338.69426 * 5 4 3
8 8 N 1.31415 * 119.99578 * 349.02414 * 7 5 4
9 9 Si 1.86796 * 119.99823 * 169.02564 * 7 5 4
10 10 H 1.48501 * 109.46698 * 179.97438 * 9 7 5
11 11 H 1.48492 * 109.47270 * 300.00008 * 9 7 5
12 12 H 1.48505 * 109.47165 * 60.00506 * 9 7 5
13 13 C 1.34779 * 119.99937 * 276.47749 * 4 3 2
14 14 O 1.21296 * 119.99604 * 185.57959 * 13 4 3
15 15 C 1.50695 * 120.00152 * 5.59122 * 13 4 3
16 16 H 1.09000 * 110.62928 * 34.52379 * 15 13 4
17 17 C 1.54319 * 110.70426 * 271.42562 * 15 13 4
18 18 N 1.47441 * 107.23252 * 219.33221 * 17 15 13
19 19 C 1.47845 * 108.56613 * 359.00767 * 18 17 15
20 20 C 1.54905 * 104.79742 * 24.09749 * 19 18 17
21 21 H 1.09001 * 110.98842 * 81.01895 * 20 19 18
22 22 C 1.53000 * 110.98861 * 204.83969 * 20 19 18
23 23 H 4.40640 * 5.51439 * 179.97438 * 4 1 2
24 24 H 1.09003 * 109.47072 * 247.07682 * 3 2 1
25 25 H 1.08998 * 109.46907 * 127.08108 * 3 2 1
26 26 H 0.97005 * 119.99529 * 179.97438 * 8 7 5
27 27 H 1.09004 * 109.88745 * 338.73755 * 17 15 13
28 28 H 1.09000 * 109.89155 * 99.92310 * 17 15 13
29 29 H 1.00895 * 111.00217 * 236.73402 * 18 17 15
30 30 H 1.09008 * 110.37268 * 142.92882 * 19 18 17
31 31 H 1.08997 * 110.37331 * 265.15176 * 19 18 17
32 32 H 1.09000 * 109.46834 * 172.26660 * 22 20 19
33 33 H 1.08995 * 109.46857 * 292.26435 * 22 20 19
34 34 H 1.08991 * 109.47137 * 52.26817 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1739 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1349 -1.3698 -0.1702
5 6 3.4900 -1.8213 -1.4151
6 1 4.1537 -2.6676 -1.5135
7 6 2.9961 -1.1900 -2.5501
8 7 2.0285 -0.3073 -2.4424
9 14 3.7074 -1.5961 -4.2289
10 1 3.0129 -0.7939 -5.2679
11 1 5.1573 -1.2761 -4.2428
12 1 3.5167 -3.0416 -4.5108
13 6 3.2358 -2.1867 0.8970
14 8 3.7346 -3.2856 0.7745
15 6 2.7286 -1.7351 2.2423
16 1 1.8438 -1.1088 2.1286
17 6 3.8320 -0.9848 3.0175
18 7 3.7286 -1.3940 4.4302
19 6 2.6006 -2.3402 4.5648
20 6 2.4289 -2.9545 3.1532
21 1 3.1502 -3.7542 2.9850
22 6 0.9987 -3.4564 2.9442
23 1 -1.0498 -0.0004 0.0001
24 1 3.0091 0.4011 0.9465
25 1 3.0090 0.6204 -0.8199
26 1 1.6839 0.1337 -3.2347
27 1 4.8116 -1.2560 2.6237
28 1 3.6800 0.0910 2.9310
29 1 3.6022 -0.5929 5.0304
30 1 2.8417 -3.1174 5.2902
31 1 1.6953 -1.8115 4.8632
32 1 0.8672 -3.7560 1.9044
33 1 0.8150 -4.3114 3.5947
34 1 0.2952 -2.6593 3.1843
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000300858763.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:35
Heat of formation + Delta-G solvation = 10.621592 kcal
Electronic energy + Delta-G solvation = -17317.112357 eV
Core-core repulsion = 14636.974643 eV
Total energy + Delta-G solvation = -2680.137714 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.15049 -38.80774 -37.04079 -34.04093 -33.13158 -32.96492 -30.74998 -28.21918
-26.88192 -26.30260 -23.19450 -21.70043 -20.21939 -19.67774 -18.60905 -18.00834
-17.22984 -16.89305 -16.05944 -15.84245 -15.46609 -14.61127 -14.49297 -14.31115
-14.07648 -13.81420 -13.50653 -13.47421 -13.09293 -13.04744 -12.79145 -12.55270
-12.19259 -11.95921 -11.72633 -11.56391 -11.26515 -11.04240 -10.61991 -10.34078
-9.80469 -9.39965 -8.29138 -5.98289 1.37116 1.40185 1.49768 1.87521
2.11322 2.30771 2.38230 3.04581 3.08931 3.30482 3.60091 3.80391
3.87133 3.99355 4.23059 4.36262 4.38275 4.50476 4.62862 4.72176
4.79179 4.83135 5.01392 5.02871 5.11383 5.23374 5.39173 5.43377
5.43726 5.79794 6.07021 6.45435 6.55220 7.12561 7.14145 7.41103
7.97624 8.67452
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031274 B = 0.008296 C = 0.007678
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 895.094502 B = 3374.489284 C = 3645.866560
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.249 4.249
2 C -0.149 4.149
3 C 0.236 3.764
4 N -0.454 5.454
5 C -0.349 4.349
6 H 0.072 0.928
7 C 0.001 3.999
8 N -0.879 5.879
9 Si 0.987 3.013
10 H -0.271 1.271
11 H -0.268 1.268
12 H -0.282 1.282
13 C 0.457 3.543
14 O -0.626 6.626
15 C -0.116 4.116
16 H 0.095 0.905
17 C 0.068 3.932
18 N -0.686 5.686
19 C 0.060 3.940
20 C -0.088 4.088
21 H 0.063 0.937
22 C -0.132 4.132
23 H 0.233 0.767
24 H 0.087 0.913
25 H 0.098 0.902
26 H 0.272 0.728
27 H 0.052 0.948
28 H 0.079 0.921
29 H 0.355 0.645
30 H 0.091 0.909
31 H 0.068 0.932
32 H 0.025 0.975
33 H 0.078 0.922
34 H 0.070 0.930
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.233 3.971 10.175 11.391
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.267 4.267
2 C -0.151 4.151
3 C 0.114 3.886
4 N -0.172 5.172
5 C -0.476 4.476
6 H 0.090 0.910
7 C -0.202 4.202
8 N -0.517 5.517
9 Si 0.811 3.189
10 H -0.195 1.195
11 H -0.193 1.193
12 H -0.207 1.207
13 C 0.247 3.753
14 O -0.513 6.513
15 C -0.139 4.139
16 H 0.113 0.887
17 C -0.062 4.062
18 N -0.316 5.316
19 C -0.068 4.068
20 C -0.107 4.107
21 H 0.082 0.918
22 C -0.190 4.190
23 H 0.250 0.750
24 H 0.105 0.895
25 H 0.116 0.884
26 H 0.082 0.918
27 H 0.070 0.930
28 H 0.097 0.903
29 H 0.173 0.827
30 H 0.109 0.891
31 H 0.087 0.913
32 H 0.044 0.956
33 H 0.097 0.903
34 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -2.553 3.107 9.934 10.717
hybrid contribution -0.603 0.249 -1.538 1.670
sum -3.156 3.356 8.396 9.577
Atomic orbital electron populations
1.25121 0.96299 1.00268 1.05038 1.23423 0.94914 1.00044 0.96671
1.18343 0.84701 0.84361 1.01200 1.43845 1.56174 1.10694 1.06508
1.19556 1.28388 1.16823 0.82865 0.91005 1.25996 0.95257 0.96519
1.02397 1.70077 1.23601 1.27050 1.30945 0.85097 0.78670 0.77933
0.77208 1.19502 1.19254 1.20741 1.20708 0.82981 0.84560 0.87041
1.90461 1.50449 1.23992 1.86371 1.22525 0.99845 0.99336 0.92183
0.88692 1.22384 0.96937 0.98511 0.88390 1.61751 1.44948 1.19504
1.05435 1.22893 0.92634 0.95931 0.95384 1.22173 0.98219 0.96105
0.94208 0.91842 1.21624 0.94638 1.02067 1.00620 0.75038 0.89503
0.88403 0.91827 0.92994 0.90282 0.82747 0.89060 0.91326 0.95623
0.90261 0.91105
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.25 -9.64 19.25 74.32 1.43 -8.21 16
2 C -0.15 -6.47 10.20 31.13 0.32 -6.15 16
3 C 0.24 10.49 4.80 84.58 0.41 10.89 16
4 N -0.45 -23.62 2.60 -645.41 -1.68 -25.30 16
5 C -0.35 -19.94 9.35 84.04 0.79 -19.16 16
6 H 0.07 4.42 7.35 -2.91 -0.02 4.40 16
7 C 0.00 0.04 5.10 84.93 0.43 0.47 16
8 N -0.88 -45.66 9.07 21.66 0.20 -45.47 16
9 Si 0.99 42.77 29.57 68.60 2.03 44.79 16
10 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16
11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16
12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16
13 C 0.46 23.01 6.61 87.66 0.58 23.59 16
14 O -0.63 -36.68 15.45 -3.08 -0.05 -36.73 16
15 C -0.12 -4.38 1.82 -10.36 -0.02 -4.40 16
16 H 0.09 3.44 6.14 -2.39 -0.01 3.42 16
17 C 0.07 2.15 6.68 86.65 0.58 2.73 16
18 N -0.69 -17.94 7.39 -504.43 -3.73 -21.67 16
19 C 0.06 1.49 7.04 86.77 0.61 2.10 16
20 C -0.09 -2.96 2.92 -9.41 -0.03 -2.99 16
21 H 0.06 2.59 7.22 -2.39 -0.02 2.57 16
22 C -0.13 -3.99 9.31 71.98 0.67 -3.32 16
23 H 0.23 6.91 7.80 -4.43 -0.03 6.87 16
24 H 0.09 3.18 6.07 -2.39 -0.01 3.17 16
25 H 0.10 4.66 6.34 -2.39 -0.02 4.65 16
26 H 0.27 13.43 8.31 -92.70 -0.77 12.66 16
27 H 0.05 1.94 7.81 -2.39 -0.02 1.92 16
28 H 0.08 2.08 7.39 -2.39 -0.02 2.06 16
29 H 0.35 6.92 8.91 -89.70 -0.80 6.12 16
30 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16
31 H 0.07 1.37 7.99 -2.39 -0.02 1.35 16
32 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16
33 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16
34 H 0.07 1.84 8.08 -2.39 -0.02 1.82 16
Total: -1.00 -68.46 282.32 2.83 -65.63
By element:
Atomic # 1 Polarization: 22.88 SS G_CDS: 0.30 Total: 23.19 kcal
Atomic # 6 Polarization: -10.21 SS G_CDS: 5.77 Total: -4.44 kcal
Atomic # 7 Polarization: -87.23 SS G_CDS: -5.21 Total: -92.44 kcal
Atomic # 8 Polarization: -36.68 SS G_CDS: -0.05 Total: -36.73 kcal
Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal
Total: -68.46 2.83 -65.63 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300858763.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.248 kcal
(2) G-P(sol) polarization free energy of solvation -68.461 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.787 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.626 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.622 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds