Wall clock time and date at job start Mon Mar 30 2020 03:38:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17402 * 1
3 3 C 1.47202 * 179.97438 * 2 1
4 4 N 1.46503 * 109.47071 * 264.86691 * 3 2 1
5 5 C 1.37099 * 119.99556 * 269.99875 * 4 3 2
6 6 H 1.08002 * 119.99845 * 203.04192 * 5 4 3
7 7 C 1.38945 * 120.00365 * 23.04624 * 5 4 3
8 8 N 1.31418 * 119.99856 * 352.48161 * 7 5 4
9 9 Si 1.86801 * 120.00497 * 172.48402 * 7 5 4
10 10 H 1.48499 * 109.46735 * 359.97438 * 9 7 5
11 11 H 1.48499 * 109.47245 * 119.99661 * 9 7 5
12 12 H 1.48502 * 109.47278 * 239.99968 * 9 7 5
13 13 C 1.34767 * 120.00297 * 89.99965 * 4 3 2
14 14 O 1.21297 * 120.00042 * 354.79452 * 13 4 3
15 15 C 1.50696 * 120.00499 * 175.06520 * 13 4 3
16 16 H 1.09006 * 110.28399 * 33.60248 * 15 13 4
17 17 C 1.54376 * 110.32772 * 155.83556 * 15 13 4
18 18 N 1.48561 * 104.59388 * 142.75455 * 17 15 13
19 19 C 1.48569 * 104.22128 * 320.51718 * 18 17 15
20 20 C 1.54261 * 110.32628 * 271.48144 * 15 13 4
21 21 H 1.08997 * 110.32536 * 122.09997 * 20 15 13
22 22 C 1.52993 * 110.32271 * 359.97438 * 20 15 13
23 23 H 4.40638 * 5.51362 * 179.97438 * 4 1 2
24 24 H 1.09004 * 109.47167 * 144.86513 * 3 2 1
25 25 H 1.09000 * 109.46937 * 24.86805 * 3 2 1
26 26 H 0.97000 * 120.00013 * 185.01829 * 8 7 5
27 27 H 1.08999 * 110.41682 * 261.53278 * 17 15 13
28 28 H 1.09002 * 110.40754 * 23.97376 * 17 15 13
29 29 H 1.00906 * 111.00027 * 200.96402 * 18 17 15
30 30 H 1.09000 * 110.41045 * 280.71028 * 19 18 17
31 31 H 1.09003 * 110.40777 * 158.26394 * 19 18 17
32 32 H 1.09003 * 109.47271 * 64.33450 * 22 20 15
33 33 H 1.09004 * 109.47198 * 184.33402 * 22 20 15
34 34 H 1.08996 * 109.47619 * 304.33467 * 22 20 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1343 0.1245 1.3757
5 6 3.3622 1.3650 1.9131
6 1 4.0458 1.4772 2.7417
7 6 2.7138 2.4778 1.3918
8 7 1.9988 2.3677 0.2946
9 14 2.8583 4.1305 2.2504
10 1 3.7131 3.9887 3.4563
11 1 3.4683 5.1179 1.3240
12 1 1.5079 4.5986 2.6537
13 6 3.3594 -0.9810 2.1129
14 8 3.0692 -2.0733 1.6724
15 6 3.9661 -0.8598 3.4870
16 1 3.6345 0.0612 3.9666
17 6 3.5878 -2.0826 4.3501
18 7 4.8032 -2.3613 5.1576
19 6 5.9283 -2.1331 4.2144
20 6 5.5058 -0.8929 3.3978
21 1 5.9298 0.0117 3.8336
22 6 5.9506 -1.0395 1.9413
23 1 -1.0499 0.0002 -0.0001
24 1 3.0090 0.8413 -0.5914
25 1 3.0098 -0.9316 -0.4322
26 1 1.6063 3.1571 -0.1097
27 1 2.7462 -1.8434 5.0001
28 1 3.3487 -2.9362 3.7158
29 1 4.8024 -3.3118 5.4961
30 1 6.0554 -2.9946 3.5589
31 1 6.8488 -1.9319 4.7624
32 1 5.6452 -0.1579 1.3777
33 1 7.0354 -1.1387 1.9009
34 1 5.4883 -1.9262 1.5076
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300858766.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:40
Heat of formation + Delta-G solvation = 36.564156 kcal
Electronic energy + Delta-G solvation = -17475.643857 eV
Core-core repulsion = 14796.631097 eV
Total energy + Delta-G solvation = -2679.012760 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.62398 -37.14092 -35.01966 -32.03930 -31.75057 -31.08655 -29.12726 -26.41487
-25.16450 -24.59232 -21.45359 -20.41084 -18.76990 -17.49425 -16.49124 -16.28200
-15.84016 -15.04521 -14.34311 -14.03039 -13.99917 -13.46970 -12.74619 -12.69351
-12.22916 -11.98171 -11.85137 -11.43707 -11.31576 -11.30565 -11.19771 -10.67701
-10.62347 -10.42491 -10.23728 -9.93325 -9.51214 -9.21451 -8.60383 -8.38994
-8.27810 -7.88932 -6.32510 -4.02234 3.08124 3.19144 3.21872 3.73545
3.92497 4.12543 4.35641 4.57338 4.97211 5.00573 5.10477 5.27877
5.48942 5.75945 5.83215 5.92182 5.94520 6.02986 6.16885 6.22956
6.33313 6.50690 6.58624 6.70765 6.73014 6.80950 7.06193 7.10282
7.26608 7.36530 7.56423 7.72007 8.32830 9.01044 9.05036 9.43457
9.82847 10.61547
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.023419 B = 0.010200 C = 0.008274
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1195.300861 B = 2744.402202 C = 3383.150180
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.292 4.292
2 C -0.084 4.084
3 C 0.239 3.761
4 N -0.441 5.441
5 C -0.336 4.336
6 H 0.101 0.899
7 C 0.038 3.962
8 N -0.864 5.864
9 Si 0.923 3.077
10 H -0.268 1.268
11 H -0.281 1.281
12 H -0.281 1.281
13 C 0.478 3.522
14 O -0.605 6.605
15 C -0.096 4.096
16 H 0.098 0.902
17 C 0.046 3.954
18 N -0.669 5.669
19 C 0.040 3.960
20 C -0.074 4.074
21 H 0.079 0.921
22 C -0.154 4.154
23 H 0.195 0.805
24 H 0.120 0.880
25 H 0.058 0.942
26 H 0.269 0.731
27 H 0.075 0.925
28 H 0.061 0.939
29 H 0.330 0.670
30 H 0.040 0.960
31 H 0.074 0.926
32 H 0.073 0.927
33 H 0.047 0.953
34 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.143 -2.899 3.762 7.001
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.311 4.311
2 C -0.086 4.086
3 C 0.117 3.883
4 N -0.158 5.158
5 C -0.463 4.463
6 H 0.119 0.881
7 C -0.166 4.166
8 N -0.502 5.502
9 Si 0.750 3.250
10 H -0.192 1.192
11 H -0.207 1.207
12 H -0.207 1.207
13 C 0.267 3.733
14 O -0.492 6.492
15 C -0.118 4.118
16 H 0.117 0.883
17 C -0.083 4.083
18 N -0.296 5.296
19 C -0.089 4.089
20 C -0.094 4.094
21 H 0.097 0.903
22 C -0.212 4.212
23 H 0.212 0.788
24 H 0.138 0.862
25 H 0.076 0.924
26 H 0.080 0.920
27 H 0.093 0.907
28 H 0.079 0.921
29 H 0.144 0.856
30 H 0.058 0.942
31 H 0.093 0.907
32 H 0.092 0.908
33 H 0.066 0.934
34 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 4.894 -2.623 3.816 6.737
hybrid contribution -0.398 0.386 -0.214 0.594
sum 4.496 -2.237 3.602 6.180
Atomic orbital electron populations
1.24153 0.95333 1.08765 1.02892 1.23200 0.94378 0.93398 0.97575
1.18298 0.84123 1.00671 0.85237 1.43657 1.56343 1.05377 1.10408
1.19679 1.25586 0.83219 1.17852 0.88093 1.25373 0.94663 1.00209
0.96392 1.69956 1.32431 1.29722 1.18063 0.85920 0.78184 0.81482
0.79445 1.19228 1.20707 1.20663 1.19871 0.82417 0.84221 0.86826
1.90519 1.58138 1.27277 1.73216 1.21871 0.95319 0.99883 0.94735
0.88333 1.22861 0.92848 0.97930 0.94696 1.63736 1.02753 1.29566
1.33554 1.22997 0.94798 0.97359 0.93762 1.21669 0.94020 0.97825
0.95894 0.90301 1.22003 0.99893 1.03586 0.95692 0.78777 0.86249
0.92424 0.91961 0.90679 0.92122 0.85555 0.94161 0.90725 0.90802
0.93429 0.92071
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.29 -6.84 19.25 29.55 0.57 -6.27 16
2 C -0.08 -2.11 11.34 -37.12 -0.42 -2.53 16
3 C 0.24 5.84 5.13 -6.83 -0.04 5.80 16
4 N -0.44 -10.76 2.06 -117.93 -0.24 -11.01 16
5 C -0.34 -8.17 8.54 -14.93 -0.13 -8.30 16
6 H 0.10 2.33 6.31 -52.49 -0.33 2.00 16
7 C 0.04 0.94 5.40 -17.47 -0.09 0.84 16
8 N -0.86 -21.95 8.37 55.50 0.46 -21.48 16
9 Si 0.92 19.29 29.56 -169.99 -5.03 14.26 16
10 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16
11 H -0.28 -5.84 7.11 56.52 0.40 -5.43 16
12 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16
13 C 0.48 11.21 4.60 -10.99 -0.05 11.16 16
14 O -0.60 -15.56 14.66 5.54 0.08 -15.48 16
15 C -0.10 -1.92 2.56 -90.39 -0.23 -2.15 16
16 H 0.10 2.03 6.61 -51.93 -0.34 1.69 16
17 C 0.05 0.83 6.95 -2.18 -0.02 0.81 16
18 N -0.67 -10.26 7.62 -109.65 -0.84 -11.10 16
19 C 0.04 0.60 7.01 -2.18 -0.02 0.59 16
20 C -0.07 -1.28 3.62 -89.24 -0.32 -1.60 16
21 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16
22 C -0.15 -2.70 7.93 37.15 0.29 -2.40 16
23 H 0.20 3.75 7.80 -54.09 -0.42 3.33 16
24 H 0.12 2.96 6.33 -51.93 -0.33 2.63 16
25 H 0.06 1.37 7.50 -51.93 -0.39 0.98 16
26 H 0.27 6.59 8.32 -40.82 -0.34 6.25 16
27 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16
28 H 0.06 1.19 6.82 -51.93 -0.35 0.84 16
29 H 0.33 4.29 8.92 -39.29 -0.35 3.94 16
30 H 0.04 0.60 7.86 -51.93 -0.41 0.19 16
31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16
32 H 0.07 1.43 6.99 -51.93 -0.36 1.07 16
33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16
34 H 0.06 1.18 6.91 -51.93 -0.36 0.82 16
LS Contribution 278.88 15.07 4.20 4.20
Total: -1.00 -28.17 278.88 -6.28 -34.45
By element:
Atomic # 1 Polarization: 14.67 SS G_CDS: -4.48 Total: 10.19 kcal
Atomic # 6 Polarization: -3.59 SS G_CDS: -0.45 Total: -4.04 kcal
Atomic # 7 Polarization: -42.97 SS G_CDS: -0.61 Total: -43.58 kcal
Atomic # 8 Polarization: -15.56 SS G_CDS: 0.08 Total: -15.48 kcal
Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal
Total LS contribution 4.20 Total: 4.20 kcal
Total: -28.17 -6.28 -34.45 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300858766.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.012 kcal
(2) G-P(sol) polarization free energy of solvation -28.167 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.845 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.448 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.564 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds