Wall clock time and date at job start Mon Mar 30 2020 03:38:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17402 * 1
3 3 C 1.47202 * 179.97438 * 2 1
4 4 N 1.46503 * 109.47071 * 264.86691 * 3 2 1
5 5 C 1.37099 * 119.99556 * 269.99875 * 4 3 2
6 6 H 1.08002 * 119.99845 * 203.04192 * 5 4 3
7 7 C 1.38945 * 120.00365 * 23.04624 * 5 4 3
8 8 N 1.31418 * 119.99856 * 352.48161 * 7 5 4
9 9 Si 1.86801 * 120.00497 * 172.48402 * 7 5 4
10 10 H 1.48499 * 109.46735 * 359.97438 * 9 7 5
11 11 H 1.48499 * 109.47245 * 119.99661 * 9 7 5
12 12 H 1.48502 * 109.47278 * 239.99968 * 9 7 5
13 13 C 1.34767 * 120.00297 * 89.99965 * 4 3 2
14 14 O 1.21297 * 120.00042 * 354.79452 * 13 4 3
15 15 C 1.50696 * 120.00499 * 175.06520 * 13 4 3
16 16 H 1.09006 * 110.28399 * 33.60248 * 15 13 4
17 17 C 1.54376 * 110.32772 * 155.83556 * 15 13 4
18 18 N 1.48561 * 104.59388 * 142.75455 * 17 15 13
19 19 C 1.48569 * 104.22128 * 320.51718 * 18 17 15
20 20 C 1.54261 * 110.32628 * 271.48144 * 15 13 4
21 21 H 1.08997 * 110.32536 * 122.09997 * 20 15 13
22 22 C 1.52993 * 110.32271 * 359.97438 * 20 15 13
23 23 H 4.40638 * 5.51362 * 179.97438 * 4 1 2
24 24 H 1.09004 * 109.47167 * 144.86513 * 3 2 1
25 25 H 1.09000 * 109.46937 * 24.86805 * 3 2 1
26 26 H 0.97000 * 120.00013 * 185.01829 * 8 7 5
27 27 H 1.08999 * 110.41682 * 261.53278 * 17 15 13
28 28 H 1.09002 * 110.40754 * 23.97376 * 17 15 13
29 29 H 1.00906 * 111.00027 * 200.96402 * 18 17 15
30 30 H 1.09000 * 110.41045 * 280.71028 * 19 18 17
31 31 H 1.09003 * 110.40777 * 158.26394 * 19 18 17
32 32 H 1.09003 * 109.47271 * 64.33450 * 22 20 15
33 33 H 1.09004 * 109.47198 * 184.33402 * 22 20 15
34 34 H 1.08996 * 109.47619 * 304.33467 * 22 20 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1343 0.1245 1.3757
5 6 3.3622 1.3650 1.9131
6 1 4.0458 1.4772 2.7417
7 6 2.7138 2.4778 1.3918
8 7 1.9988 2.3677 0.2946
9 14 2.8583 4.1305 2.2504
10 1 3.7131 3.9887 3.4563
11 1 3.4683 5.1179 1.3240
12 1 1.5079 4.5986 2.6537
13 6 3.3594 -0.9810 2.1129
14 8 3.0692 -2.0733 1.6724
15 6 3.9661 -0.8598 3.4870
16 1 3.6345 0.0612 3.9666
17 6 3.5878 -2.0826 4.3501
18 7 4.8032 -2.3613 5.1576
19 6 5.9283 -2.1331 4.2144
20 6 5.5058 -0.8929 3.3978
21 1 5.9298 0.0117 3.8336
22 6 5.9506 -1.0395 1.9413
23 1 -1.0499 0.0002 -0.0001
24 1 3.0090 0.8413 -0.5914
25 1 3.0098 -0.9316 -0.4322
26 1 1.6063 3.1571 -0.1097
27 1 2.7462 -1.8434 5.0001
28 1 3.3487 -2.9362 3.7158
29 1 4.8024 -3.3118 5.4961
30 1 6.0554 -2.9946 3.5589
31 1 6.8488 -1.9319 4.7624
32 1 5.6452 -0.1579 1.3777
33 1 7.0354 -1.1387 1.9009
34 1 5.4883 -1.9262 1.5076
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000300858766.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:40
Heat of formation + Delta-G solvation = 18.515588 kcal
Electronic energy + Delta-G solvation = -17476.426502 eV
Core-core repulsion = 14796.631097 eV
Total energy + Delta-G solvation = -2679.795405 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.29986 -38.71171 -36.90210 -33.74602 -33.53797 -32.73943 -30.64470 -28.24769
-26.60968 -26.37500 -22.98163 -21.88823 -20.54973 -19.27688 -18.17868 -18.04393
-17.30674 -16.64104 -16.15402 -15.76719 -15.62674 -14.95366 -14.42695 -14.26703
-13.86586 -13.69811 -13.33878 -13.10813 -12.97081 -12.90609 -12.81857 -12.40287
-12.10162 -11.96356 -11.67587 -11.43389 -11.37172 -11.11162 -10.51131 -10.23982
-9.79903 -9.56390 -8.18220 -5.93691 1.41948 1.48708 1.59935 1.92153
2.10197 2.33192 2.45067 3.07428 3.13998 3.46258 3.72609 3.84216
3.97672 4.08585 4.36466 4.48477 4.54574 4.61786 4.77295 4.81863
4.82898 4.89667 5.08624 5.14679 5.17129 5.28445 5.37631 5.43390
5.48753 5.71547 5.85128 6.41721 6.44766 7.12314 7.15630 7.57453
7.96803 8.75619
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.023419 B = 0.010200 C = 0.008274
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1195.300861 B = 2744.402202 C = 3383.150180
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.278 4.278
2 C -0.130 4.130
3 C 0.242 3.758
4 N -0.449 5.449
5 C -0.347 4.347
6 H 0.112 0.888
7 C -0.004 4.004
8 N -0.887 5.887
9 Si 0.988 3.012
10 H -0.255 1.255
11 H -0.278 1.278
12 H -0.289 1.289
13 C 0.473 3.527
14 O -0.634 6.634
15 C -0.098 4.098
16 H 0.091 0.909
17 C 0.052 3.948
18 N -0.661 5.661
19 C 0.045 3.955
20 C -0.075 4.075
21 H 0.092 0.908
22 C -0.145 4.145
23 H 0.232 0.768
24 H 0.110 0.890
25 H 0.052 0.948
26 H 0.267 0.733
27 H 0.080 0.920
28 H 0.040 0.960
29 H 0.347 0.653
30 H 0.040 0.960
31 H 0.104 0.896
32 H 0.049 0.951
33 H 0.079 0.921
34 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.996 -2.444 5.417 8.442
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.297 4.297
2 C -0.131 4.131
3 C 0.120 3.880
4 N -0.166 5.166
5 C -0.474 4.474
6 H 0.129 0.871
7 C -0.206 4.206
8 N -0.525 5.525
9 Si 0.812 3.188
10 H -0.179 1.179
11 H -0.204 1.204
12 H -0.216 1.216
13 C 0.264 3.736
14 O -0.523 6.523
15 C -0.120 4.120
16 H 0.110 0.890
17 C -0.078 4.078
18 N -0.290 5.290
19 C -0.084 4.084
20 C -0.094 4.094
21 H 0.110 0.890
22 C -0.203 4.203
23 H 0.248 0.752
24 H 0.128 0.872
25 H 0.070 0.930
26 H 0.078 0.922
27 H 0.098 0.902
28 H 0.059 0.941
29 H 0.163 0.837
30 H 0.058 0.942
31 H 0.123 0.877
32 H 0.068 0.932
33 H 0.097 0.903
34 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges 5.766 -2.181 5.482 8.249
hybrid contribution -0.694 0.200 -0.776 1.060
sum 5.072 -1.981 4.706 7.197
Atomic orbital electron populations
1.25065 0.96373 1.07029 1.01215 1.23615 0.95251 0.95031 0.99235
1.18156 0.84399 0.99837 0.85639 1.43836 1.56380 1.05938 1.10433
1.19984 1.25981 0.83283 1.18134 0.87072 1.26161 0.94370 1.03259
0.96818 1.70094 1.33084 1.30302 1.19052 0.84934 0.77662 0.77413
0.78791 1.17867 1.20375 1.21568 1.20486 0.81763 0.83444 0.87944
1.90489 1.59307 1.28261 1.74258 1.21900 0.97266 1.00369 0.92454
0.89050 1.22721 0.94312 0.96290 0.94457 1.63731 1.01575 1.30969
1.32695 1.23025 0.95568 0.96101 0.93679 1.21748 0.91878 0.99738
0.96047 0.88957 1.21885 1.01703 1.01128 0.95557 0.75179 0.87249
0.92965 0.92204 0.90192 0.94146 0.83729 0.94169 0.87734 0.93224
0.90251 0.94568
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.28 -12.85 19.25 74.32 1.43 -11.42 16
2 C -0.13 -6.62 11.34 31.13 0.35 -6.27 16
3 C 0.24 12.24 5.13 84.57 0.43 12.68 16
4 N -0.45 -22.36 2.06 -645.42 -1.33 -23.69 16
5 C -0.35 -16.87 8.54 84.04 0.72 -16.15 16
6 H 0.11 5.06 6.31 -2.91 -0.02 5.04 16
7 C 0.00 -0.20 5.40 84.92 0.46 0.26 16
8 N -0.89 -45.44 8.37 21.66 0.18 -45.26 16
9 Si 0.99 38.99 29.56 68.60 2.03 41.02 16
10 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16
11 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16
12 H -0.29 -11.78 7.11 99.48 0.71 -11.07 16
13 C 0.47 22.54 4.60 87.66 0.40 22.95 16
14 O -0.63 -33.50 14.66 -3.08 -0.05 -33.54 16
15 C -0.10 -3.84 2.56 -10.65 -0.03 -3.87 16
16 H 0.09 3.69 6.61 -2.38 -0.02 3.67 16
17 C 0.05 1.82 6.95 86.45 0.60 2.42 16
18 N -0.66 -18.54 7.62 -500.83 -3.82 -22.36 16
19 C 0.05 1.22 7.01 86.45 0.61 1.83 16
20 C -0.07 -2.42 3.62 -9.90 -0.04 -2.46 16
21 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16
22 C -0.15 -4.96 7.93 71.98 0.57 -4.39 16
23 H 0.23 8.41 7.80 -4.42 -0.03 8.38 16
24 H 0.11 5.66 6.33 -2.38 -0.02 5.64 16
25 H 0.05 2.61 7.50 -2.39 -0.02 2.59 16
26 H 0.27 13.19 8.32 -92.71 -0.77 12.42 16
27 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16
28 H 0.04 1.58 6.82 -2.39 -0.02 1.56 16
29 H 0.35 8.03 8.92 -89.69 -0.80 7.23 16
30 H 0.04 1.10 7.86 -2.39 -0.02 1.08 16
31 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16
32 H 0.05 1.92 6.99 -2.39 -0.02 1.90 16
33 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16
34 H 0.04 1.40 6.91 -2.39 -0.02 1.38 16
Total: -1.00 -60.27 278.88 2.83 -57.44
By element:
Atomic # 1 Polarization: 30.51 SS G_CDS: 0.30 Total: 30.81 kcal
Atomic # 6 Polarization: -9.94 SS G_CDS: 5.51 Total: -4.42 kcal
Atomic # 7 Polarization: -86.34 SS G_CDS: -4.97 Total: -91.30 kcal
Atomic # 8 Polarization: -33.50 SS G_CDS: -0.05 Total: -33.54 kcal
Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal
Total: -60.27 2.83 -57.44 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300858766.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.954 kcal
(2) G-P(sol) polarization free energy of solvation -60.267 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.688 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.439 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.516 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds