Wall clock time and date at job start Mon Mar 30 2020 03:33:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17400 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 N 1.46504 * 109.47218 * 200.32725 * 3 2 1
5 5 C 1.37093 * 120.00146 * 263.85691 * 4 3 2
6 6 H 1.07997 * 120.00142 * 201.14863 * 5 4 3
7 7 C 1.38952 * 119.99896 * 21.13819 * 5 4 3
8 8 N 1.31419 * 119.99901 * 10.72670 * 7 5 4
9 9 Si 1.86800 * 119.99928 * 190.72121 * 7 5 4
10 10 H 1.48503 * 109.46875 * 90.00595 * 9 7 5
11 11 H 1.48509 * 109.47167 * 210.00323 * 9 7 5
12 12 H 1.48495 * 109.47430 * 330.00415 * 9 7 5
13 13 C 1.34777 * 119.99749 * 83.85461 * 4 3 2
14 14 O 1.21292 * 119.99564 * 185.14298 * 13 4 3
15 15 C 1.50699 * 120.00250 * 5.13674 * 13 4 3
16 16 C 1.53117 * 109.52061 * 88.42323 * 15 13 4
17 17 C 1.53042 * 109.27530 * 177.56057 * 16 15 13
18 18 N 1.46840 * 109.52539 * 300.81449 * 17 16 15
19 19 C 1.46853 * 111.19723 * 61.74308 * 18 17 16
20 20 C 1.53038 * 109.52543 * 298.26233 * 19 18 17
21 21 H 4.40644 * 5.51349 * 180.02562 * 4 1 2
22 22 H 1.08995 * 109.47429 * 80.32487 * 3 2 1
23 23 H 1.09001 * 109.47326 * 320.32301 * 3 2 1
24 24 H 0.97001 * 119.99694 * 179.97438 * 8 7 5
25 25 H 1.09000 * 109.57480 * 328.26054 * 15 13 4
26 26 H 1.08990 * 109.50629 * 57.61837 * 16 15 13
27 27 H 1.09004 * 109.50017 * 297.49853 * 16 15 13
28 28 H 1.09007 * 109.45787 * 180.80017 * 17 16 15
29 29 H 1.09003 * 109.46437 * 60.83648 * 17 16 15
30 30 H 1.00896 * 111.00469 * 185.84229 * 18 17 16
31 31 H 1.09006 * 109.46072 * 58.27618 * 19 18 17
32 32 H 1.09000 * 109.46312 * 178.24167 * 19 18 17
33 33 H 1.09003 * 109.49856 * 299.23491 * 20 19 18
34 34 H 1.08998 * 109.50320 * 179.11722 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1338 1.2961 0.4798
5 6 3.4817 2.2726 -0.4173
6 1 4.1426 3.0719 -0.1162
7 6 2.9840 2.2339 -1.7141
8 7 2.0227 1.3932 -2.0241
9 14 3.6812 3.3771 -3.0165
10 1 4.8206 2.7131 -3.6993
11 1 2.6258 3.6962 -4.0114
12 1 4.1514 4.6308 -2.3745
13 6 3.2405 1.5278 1.8032
14 8 3.5547 2.6291 2.2026
15 6 2.9694 0.4186 2.7867
16 6 4.2605 -0.3631 3.0450
17 6 3.9931 -1.4490 4.0897
18 7 3.5190 -0.8279 5.3329
19 6 2.2552 -0.1109 5.1199
20 6 2.4705 1.0149 4.1058
21 1 -1.0501 -0.0005 0.0000
22 1 3.0095 -0.1719 -1.0130
23 1 3.0097 -0.7901 0.6561
24 1 1.6751 1.3664 -2.9293
25 1 2.2123 -0.2523 2.3809
26 1 5.0292 0.3157 3.4141
27 1 4.5975 -0.8256 2.1173
28 1 4.9140 -1.9982 4.2863
29 1 3.2342 -2.1354 3.7141
30 1 3.4263 -1.5135 6.0673
31 1 1.5044 -0.8035 4.7395
32 1 1.9136 0.3118 6.0648
33 1 3.2112 1.7154 4.4917
34 1 1.5288 1.5369 3.9362
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300867142.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:33:54
Heat of formation + Delta-G solvation = 27.173831 kcal
Electronic energy + Delta-G solvation = -17212.964436 eV
Core-core repulsion = 14533.544481 eV
Total energy + Delta-G solvation = -2679.419955 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.34747 -37.30242 -35.10954 -32.35183 -31.52072 -31.10587 -30.50183 -26.49601
-25.25585 -23.43031 -22.66850 -20.02156 -18.53053 -17.81563 -16.72397 -16.35130
-16.06435 -14.66980 -14.41576 -14.22071 -14.06827 -13.61377 -13.24949 -12.83036
-12.64582 -12.23086 -12.07671 -11.80518 -11.42445 -11.02776 -10.97956 -10.75810
-10.48160 -10.36875 -10.15788 -10.04348 -9.37376 -9.26374 -8.81248 -8.39041
-8.25556 -7.80653 -6.26272 -3.87509 3.16953 3.26179 3.31327 3.70308
3.93574 4.10478 4.20407 4.33495 4.87866 5.06281 5.12702 5.25229
5.42592 5.48097 5.50809 5.65027 5.75691 5.83140 5.98748 6.00152
6.15277 6.25351 6.31347 6.48475 6.62564 6.82482 6.85843 7.08812
7.13952 7.47202 7.57238 8.10654 8.47601 8.83831 9.17761 9.39471
9.95975 10.73170
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.034040 B = 0.007766 C = 0.007100
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 822.354984 B = 3604.620382 C = 3942.446955
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.271 4.271
2 C -0.106 4.106
3 C 0.232 3.768
4 N -0.445 5.445
5 C -0.307 4.307
6 H 0.101 0.899
7 C 0.028 3.972
8 N -0.875 5.875
9 Si 0.927 3.073
10 H -0.278 1.278
11 H -0.285 1.285
12 H -0.270 1.270
13 C 0.461 3.539
14 O -0.581 6.581
15 C -0.102 4.102
16 C -0.105 4.105
17 C 0.061 3.939
18 N -0.690 5.690
19 C 0.060 3.940
20 C -0.096 4.096
21 H 0.198 0.802
22 H 0.116 0.884
23 H 0.057 0.943
24 H 0.267 0.733
25 H 0.077 0.923
26 H 0.075 0.925
27 H 0.068 0.932
28 H 0.073 0.927
29 H 0.029 0.971
30 H 0.337 0.663
31 H 0.027 0.973
32 H 0.072 0.928
33 H 0.080 0.920
34 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.161 -8.234 7.322 11.019
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.289 4.289
2 C -0.107 4.107
3 C 0.109 3.891
4 N -0.163 5.163
5 C -0.435 4.435
6 H 0.119 0.881
7 C -0.175 4.175
8 N -0.514 5.514
9 Si 0.754 3.246
10 H -0.204 1.204
11 H -0.210 1.210
12 H -0.195 1.195
13 C 0.249 3.751
14 O -0.464 6.464
15 C -0.124 4.124
16 C -0.143 4.143
17 C -0.068 4.068
18 N -0.321 5.321
19 C -0.070 4.070
20 C -0.134 4.134
21 H 0.215 0.785
22 H 0.133 0.867
23 H 0.075 0.925
24 H 0.078 0.922
25 H 0.095 0.905
26 H 0.094 0.906
27 H 0.087 0.913
28 H 0.091 0.909
29 H 0.047 0.953
30 H 0.154 0.846
31 H 0.046 0.954
32 H 0.090 0.910
33 H 0.099 0.901
34 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 0.631 -7.143 7.226 10.180
hybrid contribution -0.855 -0.264 -1.048 1.378
sum -0.224 -7.407 6.178 9.648
Atomic orbital electron populations
1.24259 0.95380 1.03273 1.06037 1.23251 0.94417 0.97364 0.95691
1.18323 0.84118 0.85219 1.01460 1.43681 1.56373 1.12149 1.04111
1.19697 1.26676 1.06532 0.90579 0.88144 1.25346 0.95283 0.98002
0.98876 1.69976 1.24185 1.36946 1.20304 0.85912 0.78291 0.80395
0.80032 1.20391 1.21045 1.19475 1.20064 0.83232 0.88939 0.82836
1.90509 1.52563 1.25164 1.78186 1.21245 0.98241 0.97129 0.95784
1.21520 0.97475 0.97295 0.98010 1.21925 0.99288 0.95418 0.90214
1.60263 1.31190 1.32291 1.08357 1.21960 0.89634 0.96001 0.99365
1.21366 1.01873 0.97076 0.93081 0.78491 0.86659 0.92468 0.92196
0.90483 0.90647 0.91311 0.90880 0.95279 0.84601 0.95449 0.90954
0.90139 0.91758
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.27 -5.73 19.25 29.55 0.57 -5.16 16
2 C -0.11 -2.41 10.77 -37.12 -0.40 -2.81 16
3 C 0.23 5.21 4.77 -6.83 -0.03 5.18 16
4 N -0.44 -11.36 2.60 -117.93 -0.31 -11.67 16
5 C -0.31 -8.54 9.30 -14.93 -0.14 -8.68 16
6 H 0.10 2.93 7.43 -52.49 -0.39 2.54 16
7 C 0.03 0.73 5.11 -17.46 -0.09 0.64 16
8 N -0.87 -23.13 9.04 55.50 0.50 -22.63 16
9 Si 0.93 20.84 29.57 -169.99 -5.03 15.81 16
10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16
11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16
13 C 0.46 11.36 6.63 -10.99 -0.07 11.28 16
14 O -0.58 -16.39 15.81 5.55 0.09 -16.30 16
15 C -0.10 -1.95 1.76 -91.65 -0.16 -2.11 16
16 C -0.10 -1.71 5.24 -26.65 -0.14 -1.85 16
17 C 0.06 0.79 6.55 -3.83 -0.03 0.77 16
18 N -0.69 -8.90 6.85 -113.81 -0.78 -9.68 16
19 C 0.06 0.82 6.55 -3.83 -0.03 0.79 16
20 C -0.10 -1.69 5.00 -26.65 -0.13 -1.82 16
21 H 0.20 3.41 7.80 -54.08 -0.42 2.99 16
22 H 0.12 2.74 6.35 -51.93 -0.33 2.41 16
23 H 0.06 1.09 5.86 -51.93 -0.30 0.78 16
24 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16
25 H 0.08 1.45 6.04 -51.93 -0.31 1.13 16
26 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16
27 H 0.07 1.08 7.39 -51.93 -0.38 0.69 16
28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16
29 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16
30 H 0.34 3.41 8.90 -39.29 -0.35 3.06 16
31 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16
32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16
33 H 0.08 1.56 7.78 -51.93 -0.40 1.16 16
34 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16
LS Contribution 280.82 15.07 4.23 4.23
Total: -1.00 -31.31 280.82 -6.51 -37.81
By element:
Atomic # 1 Polarization: 10.76 SS G_CDS: -4.57 Total: 6.19 kcal
Atomic # 6 Polarization: -3.13 SS G_CDS: -0.65 Total: -3.78 kcal
Atomic # 7 Polarization: -43.39 SS G_CDS: -0.58 Total: -43.97 kcal
Atomic # 8 Polarization: -16.39 SS G_CDS: 0.09 Total: -16.30 kcal
Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.81 kcal
Total LS contribution 4.23 Total: 4.23 kcal
Total: -31.31 -6.51 -37.81 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300867142.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.987 kcal
(2) G-P(sol) polarization free energy of solvation -31.306 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.681 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.813 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.174 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds