Wall clock time and date at job start Mon Mar 30 2020 03:33:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17400 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 N 1.46504 * 109.47218 * 200.32725 * 3 2 1
5 5 C 1.37093 * 120.00146 * 263.85691 * 4 3 2
6 6 H 1.07997 * 120.00142 * 201.14863 * 5 4 3
7 7 C 1.38952 * 119.99896 * 21.13819 * 5 4 3
8 8 N 1.31419 * 119.99901 * 10.72670 * 7 5 4
9 9 Si 1.86800 * 119.99928 * 190.72121 * 7 5 4
10 10 H 1.48503 * 109.46875 * 90.00595 * 9 7 5
11 11 H 1.48509 * 109.47167 * 210.00323 * 9 7 5
12 12 H 1.48495 * 109.47430 * 330.00415 * 9 7 5
13 13 C 1.34777 * 119.99749 * 83.85461 * 4 3 2
14 14 O 1.21292 * 119.99564 * 185.14298 * 13 4 3
15 15 C 1.50699 * 120.00250 * 5.13674 * 13 4 3
16 16 C 1.53117 * 109.52061 * 88.42323 * 15 13 4
17 17 C 1.53042 * 109.27530 * 177.56057 * 16 15 13
18 18 N 1.46840 * 109.52539 * 300.81449 * 17 16 15
19 19 C 1.46853 * 111.19723 * 61.74308 * 18 17 16
20 20 C 1.53038 * 109.52543 * 298.26233 * 19 18 17
21 21 H 4.40644 * 5.51349 * 180.02562 * 4 1 2
22 22 H 1.08995 * 109.47429 * 80.32487 * 3 2 1
23 23 H 1.09001 * 109.47326 * 320.32301 * 3 2 1
24 24 H 0.97001 * 119.99694 * 179.97438 * 8 7 5
25 25 H 1.09000 * 109.57480 * 328.26054 * 15 13 4
26 26 H 1.08990 * 109.50629 * 57.61837 * 16 15 13
27 27 H 1.09004 * 109.50017 * 297.49853 * 16 15 13
28 28 H 1.09007 * 109.45787 * 180.80017 * 17 16 15
29 29 H 1.09003 * 109.46437 * 60.83648 * 17 16 15
30 30 H 1.00896 * 111.00469 * 185.84229 * 18 17 16
31 31 H 1.09006 * 109.46072 * 58.27618 * 19 18 17
32 32 H 1.09000 * 109.46312 * 178.24167 * 19 18 17
33 33 H 1.09003 * 109.49856 * 299.23491 * 20 19 18
34 34 H 1.08998 * 109.50320 * 179.11722 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1338 1.2961 0.4798
5 6 3.4817 2.2726 -0.4173
6 1 4.1426 3.0719 -0.1162
7 6 2.9840 2.2339 -1.7141
8 7 2.0227 1.3932 -2.0241
9 14 3.6812 3.3771 -3.0165
10 1 4.8206 2.7131 -3.6993
11 1 2.6258 3.6962 -4.0114
12 1 4.1514 4.6308 -2.3745
13 6 3.2405 1.5278 1.8032
14 8 3.5547 2.6291 2.2026
15 6 2.9694 0.4186 2.7867
16 6 4.2605 -0.3631 3.0450
17 6 3.9931 -1.4490 4.0897
18 7 3.5190 -0.8279 5.3329
19 6 2.2552 -0.1109 5.1199
20 6 2.4705 1.0149 4.1058
21 1 -1.0501 -0.0005 0.0000
22 1 3.0095 -0.1719 -1.0130
23 1 3.0097 -0.7901 0.6561
24 1 1.6751 1.3664 -2.9293
25 1 2.2123 -0.2523 2.3809
26 1 5.0292 0.3157 3.4141
27 1 4.5975 -0.8256 2.1173
28 1 4.9140 -1.9982 4.2863
29 1 3.2342 -2.1354 3.7141
30 1 3.4263 -1.5135 6.0673
31 1 1.5044 -0.8035 4.7395
32 1 1.9136 0.3118 6.0648
33 1 3.2112 1.7154 4.4917
34 1 1.5288 1.5369 3.9362
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000300867142.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:33:54
Heat of formation + Delta-G solvation = 5.526595 kcal
Electronic energy + Delta-G solvation = -17213.903130 eV
Core-core repulsion = 14533.544481 eV
Total energy + Delta-G solvation = -2680.358650 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.04676 -38.73729 -37.06468 -34.15297 -33.11887 -32.85577 -31.72582 -28.35229
-27.03034 -25.01101 -23.87896 -21.49634 -20.13798 -19.66826 -18.48622 -17.95980
-17.54641 -16.55164 -15.96964 -15.87309 -15.52768 -14.93464 -14.73573 -14.36380
-14.22533 -14.03523 -13.65263 -13.36100 -13.09419 -12.81491 -12.52239 -12.33149
-12.18717 -12.08882 -11.60370 -11.36098 -11.26595 -11.05951 -10.61831 -10.22372
-9.80934 -9.33919 -8.28393 -5.98324 1.36061 1.40147 1.51521 1.88142
2.12550 2.32309 2.38188 3.06657 3.16191 3.34064 3.79058 3.87025
3.96530 3.98063 4.27776 4.34924 4.49599 4.54551 4.66350 4.69222
4.81518 4.90521 4.96365 5.03481 5.14627 5.24479 5.39668 5.43041
5.43744 6.07207 6.08267 6.46214 6.63691 7.12372 7.14986 7.42104
7.99280 8.67913
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.034040 B = 0.007766 C = 0.007100
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 822.354984 B = 3604.620382 C = 3942.446955
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.253 4.253
2 C -0.149 4.149
3 C 0.236 3.764
4 N -0.455 5.455
5 C -0.347 4.347
6 H 0.071 0.929
7 C -0.001 4.001
8 N -0.881 5.881
9 Si 0.988 3.012
10 H -0.263 1.263
11 H -0.276 1.276
12 H -0.280 1.280
13 C 0.447 3.553
14 O -0.631 6.631
15 C -0.091 4.091
16 C -0.102 4.102
17 C 0.068 3.932
18 N -0.698 5.698
19 C 0.070 3.930
20 C -0.095 4.095
21 H 0.233 0.767
22 H 0.098 0.902
23 H 0.091 0.909
24 H 0.271 0.729
25 H 0.086 0.914
26 H 0.053 0.947
27 H 0.073 0.927
28 H 0.098 0.902
29 H 0.044 0.956
30 H 0.358 0.642
31 H 0.041 0.959
32 H 0.092 0.908
33 H 0.053 0.947
34 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.610 -10.163 7.579 12.692
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.271 4.271
2 C -0.151 4.151
3 C 0.114 3.886
4 N -0.173 5.173
5 C -0.475 4.475
6 H 0.089 0.911
7 C -0.203 4.203
8 N -0.519 5.519
9 Si 0.813 3.187
10 H -0.188 1.188
11 H -0.201 1.201
12 H -0.206 1.206
13 C 0.238 3.762
14 O -0.518 6.518
15 C -0.113 4.113
16 C -0.141 4.141
17 C -0.062 4.062
18 N -0.332 5.332
19 C -0.060 4.060
20 C -0.134 4.134
21 H 0.250 0.750
22 H 0.116 0.884
23 H 0.109 0.891
24 H 0.081 0.919
25 H 0.104 0.896
26 H 0.072 0.928
27 H 0.092 0.908
28 H 0.116 0.884
29 H 0.062 0.938
30 H 0.178 0.822
31 H 0.059 0.941
32 H 0.110 0.890
33 H 0.072 0.928
34 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -0.153 -9.130 7.486 11.808
hybrid contribution -0.662 0.363 -1.148 1.374
sum -0.815 -8.767 6.338 10.849
Atomic orbital electron populations
1.25149 0.96369 1.01369 1.04201 1.23521 0.95075 0.99101 0.97402
1.18338 0.84498 0.84595 1.01198 1.43902 1.56180 1.12826 1.04347
1.19618 1.28152 1.07505 0.92200 0.91065 1.26031 0.95203 0.99216
0.99857 1.70090 1.23950 1.37085 1.20739 0.85007 0.78174 0.78127
0.77441 1.18765 1.20123 1.20572 1.21107 0.81927 0.89797 0.83386
1.90460 1.54689 1.27594 1.79056 1.21217 0.99948 0.95421 0.94719
1.21525 0.95208 0.97699 0.99657 1.21887 1.01031 0.94068 0.89166
1.60164 1.30764 1.33283 1.08981 1.21843 0.90399 0.94848 0.98885
1.21350 1.00234 0.98232 0.93558 0.75038 0.88374 0.89135 0.91860
0.89633 0.92828 0.90807 0.88403 0.93759 0.82152 0.94081 0.88991
0.92777 0.93071
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.25 -10.17 19.25 74.32 1.43 -8.74 16
2 C -0.15 -6.70 10.77 31.13 0.34 -6.36 16
3 C 0.24 10.61 4.77 84.57 0.40 11.02 16
4 N -0.45 -23.91 2.60 -645.41 -1.68 -25.59 16
5 C -0.35 -20.03 9.30 84.04 0.78 -19.25 16
6 H 0.07 4.42 7.43 -2.91 -0.02 4.40 16
7 C 0.00 -0.05 5.11 84.93 0.43 0.39 16
8 N -0.88 -46.36 9.04 21.66 0.20 -46.17 16
9 Si 0.99 43.04 29.57 68.60 2.03 45.07 16
10 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16
11 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16
12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16
13 C 0.45 22.85 6.63 87.66 0.58 23.44 16
14 O -0.63 -37.65 15.81 -3.07 -0.05 -37.70 16
15 C -0.09 -3.48 1.76 -11.46 -0.02 -3.50 16
16 C -0.10 -3.25 5.24 30.65 0.16 -3.09 16
17 C 0.07 1.54 6.55 86.33 0.57 2.11 16
18 N -0.70 -15.87 6.85 -513.98 -3.52 -19.38 16
19 C 0.07 1.73 6.55 86.32 0.57 2.29 16
20 C -0.10 -3.36 5.00 30.65 0.15 -3.21 16
21 H 0.23 7.24 7.80 -4.41 -0.03 7.20 16
22 H 0.10 4.71 6.35 -2.39 -0.02 4.69 16
23 H 0.09 3.35 5.86 -2.39 -0.01 3.34 16
24 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16
25 H 0.09 3.10 6.04 -2.39 -0.01 3.09 16
26 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16
27 H 0.07 2.23 7.39 -2.39 -0.02 2.21 16
28 H 0.10 1.80 8.14 -2.38 -0.02 1.79 16
29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16
30 H 0.36 5.82 8.90 -89.70 -0.80 5.02 16
31 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16
32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16
33 H 0.05 2.17 7.78 -2.39 -0.02 2.15 16
34 H 0.05 1.88 8.14 -2.39 -0.02 1.87 16
Total: -1.00 -70.03 280.82 2.67 -67.36
By element:
Atomic # 1 Polarization: 21.02 SS G_CDS: 0.30 Total: 21.32 kcal
Atomic # 6 Polarization: -10.30 SS G_CDS: 5.39 Total: -4.91 kcal
Atomic # 7 Polarization: -86.14 SS G_CDS: -5.00 Total: -91.14 kcal
Atomic # 8 Polarization: -37.65 SS G_CDS: -0.05 Total: -37.70 kcal
Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal
Total: -70.03 2.67 -67.36 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300867142.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.890 kcal
(2) G-P(sol) polarization free energy of solvation -70.032 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.858 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.363 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.527 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds