Wall clock time and date at job start Mon Mar 30 2020 03:38:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17397 * 1
3 3 C 1.47210 * 179.97438 * 2 1
4 4 N 1.46490 * 109.47156 * 67.00074 * 3 2 1
5 5 C 1.37096 * 120.00217 * 96.08960 * 4 3 2
6 6 H 1.08001 * 120.00243 * 159.49207 * 5 4 3
7 7 C 1.38950 * 119.99726 * 339.49157 * 5 4 3
8 8 N 1.31417 * 120.00378 * 345.27777 * 7 5 4
9 9 Si 1.86806 * 120.00221 * 165.28056 * 7 5 4
10 10 H 1.48491 * 109.47543 * 180.02562 * 9 7 5
11 11 H 1.48504 * 109.46701 * 300.00176 * 9 7 5
12 12 H 1.48498 * 109.46857 * 59.99459 * 9 7 5
13 13 C 1.34777 * 120.00029 * 276.08793 * 4 3 2
14 14 O 1.21284 * 119.99930 * 0.02562 * 13 4 3
15 15 C 1.50707 * 119.99979 * 180.02562 * 13 4 3
16 16 H 1.08992 * 110.27524 * 32.25636 * 15 13 4
17 17 C 1.54589 * 110.30747 * 154.45505 * 15 13 4
18 18 C 1.54941 * 102.92310 * 140.87214 * 17 15 13
19 19 N 1.48539 * 103.22336 * 322.58263 * 18 17 15
20 20 C 1.47906 * 105.81778 * 39.20930 * 19 18 17
21 21 H 1.08993 * 109.92159 * 94.02285 * 20 19 18
22 22 C 1.53003 * 110.07704 * 215.22361 * 20 19 18
23 23 H 4.40640 * 5.51388 * 180.02562 * 4 1 2
24 24 H 1.09000 * 109.46851 * 306.99826 * 3 2 1
25 25 H 1.09000 * 109.46506 * 187.00258 * 3 2 1
26 26 H 0.96993 * 120.00464 * 180.02562 * 8 7 5
27 27 H 1.09004 * 110.72761 * 259.22580 * 17 15 13
28 28 H 1.09004 * 110.72898 * 22.51523 * 17 15 13
29 29 H 1.09002 * 110.66863 * 204.15458 * 18 17 15
30 30 H 1.08995 * 110.66797 * 81.01346 * 18 17 15
31 31 H 1.00896 * 110.99822 * 159.71704 * 19 18 17
32 32 H 1.09005 * 109.46903 * 177.90757 * 22 20 19
33 33 H 1.09001 * 109.47368 * 297.90407 * 22 20 19
34 34 H 1.08994 * 109.47409 * 57.90687 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 7 3.1346 -0.5388 -1.2713
5 6 3.4815 0.3120 -2.2889
6 1 4.1347 -0.0287 -3.0786
7 6 2.9926 1.6126 -2.3041
8 7 1.9866 1.9456 -1.5270
9 14 3.7654 2.8878 -3.4294
10 1 3.0675 4.1872 -3.2580
11 1 5.2007 3.0480 -3.0837
12 1 3.6429 2.4419 -4.8405
13 6 3.2431 -1.8714 -1.4407
14 8 2.9359 -2.6241 -0.5407
15 6 3.7463 -2.4263 -2.7484
16 1 4.4701 -1.7444 -3.1945
17 6 4.3809 -3.8192 -2.5315
18 6 3.9153 -4.6103 -3.7797
19 7 2.5314 -4.1168 -3.9981
20 6 2.5714 -2.6657 -3.7148
21 1 2.7321 -2.1111 -4.6392
22 6 1.2609 -2.2216 -3.0620
23 1 -1.0499 0.0001 -0.0002
24 1 3.0096 -0.6176 0.8208
25 1 3.0088 1.0209 0.1253
26 1 1.6451 2.8534 -1.5379
27 1 5.4682 -3.7476 -2.5038
28 1 4.0001 -4.2788 -1.6194
29 1 3.9143 -5.6815 -3.5780
30 1 4.5458 -4.3799 -4.6385
31 1 2.2302 -4.2921 -4.9449
32 1 1.3153 -1.1593 -2.8238
33 1 0.4342 -2.3976 -3.7503
34 1 1.0994 -2.7913 -2.1469
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300872936.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:30
Heat of formation + Delta-G solvation = 37.634809 kcal
Electronic energy + Delta-G solvation = -17606.341018 eV
Core-core repulsion = 14927.374684 eV
Total energy + Delta-G solvation = -2678.966333 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.54334 -37.10215 -34.97043 -31.89948 -31.44631 -30.59692 -29.91824 -26.53260
-25.16385 -24.40992 -20.95406 -20.58423 -18.72447 -17.44321 -16.79218 -16.31620
-15.78300 -14.65599 -14.40584 -14.20099 -13.89436 -13.35331 -12.80921 -12.59758
-11.92644 -11.75859 -11.64025 -11.53107 -11.29264 -11.13774 -11.03055 -10.78298
-10.62299 -10.46562 -10.16163 -9.93368 -9.32919 -9.24960 -8.65182 -8.36748
-8.12819 -7.85779 -6.35032 -3.98485 3.08713 3.17937 3.18262 3.75462
3.98041 4.13919 4.35247 4.59856 4.91267 4.98671 5.21116 5.34773
5.56932 5.70366 5.77877 5.90201 6.00969 6.14928 6.21947 6.34006
6.42580 6.64908 6.72558 6.74652 6.80234 6.95261 7.22358 7.26263
7.28043 7.36981 7.69751 7.72183 8.31872 9.03312 9.06159 9.46513
9.87547 10.63338
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.022976 B = 0.010731 C = 0.008795
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1218.373825 B = 2608.530078 C = 3182.935782
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.278 4.278
2 C -0.092 4.092
3 C 0.242 3.758
4 N -0.442 5.442
5 C -0.340 4.340
6 H 0.097 0.903
7 C 0.039 3.961
8 N -0.856 5.856
9 Si 0.917 3.083
10 H -0.284 1.284
11 H -0.274 1.274
12 H -0.274 1.274
13 C 0.483 3.517
14 O -0.596 6.596
15 C -0.101 4.101
16 H 0.089 0.911
17 C -0.114 4.114
18 C 0.040 3.960
19 N -0.668 5.668
20 C 0.094 3.906
21 H 0.047 0.953
22 C -0.142 4.142
23 H 0.195 0.805
24 H 0.062 0.938
25 H 0.106 0.894
26 H 0.270 0.730
27 H 0.064 0.936
28 H 0.092 0.908
29 H 0.076 0.924
30 H 0.034 0.966
31 H 0.329 0.671
32 H 0.083 0.917
33 H 0.038 0.962
34 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.874 -3.993 -4.290 6.527
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.297 4.297
2 C -0.094 4.094
3 C 0.120 3.880
4 N -0.159 5.159
5 C -0.468 4.468
6 H 0.115 0.885
7 C -0.167 4.167
8 N -0.493 5.493
9 Si 0.744 3.256
10 H -0.209 1.209
11 H -0.199 1.199
12 H -0.200 1.200
13 C 0.271 3.729
14 O -0.482 6.482
15 C -0.123 4.123
16 H 0.107 0.893
17 C -0.152 4.152
18 C -0.089 4.089
19 N -0.297 5.297
20 C -0.016 4.016
21 H 0.065 0.935
22 C -0.199 4.199
23 H 0.213 0.787
24 H 0.080 0.920
25 H 0.124 0.876
26 H 0.081 0.919
27 H 0.083 0.917
28 H 0.110 0.890
29 H 0.094 0.906
30 H 0.053 0.947
31 H 0.144 0.856
32 H 0.102 0.898
33 H 0.057 0.943
34 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 2.343 -4.346 -3.149 5.856
hybrid contribution 0.502 1.349 -1.655 2.194
sum 2.845 -2.996 -4.805 6.337
Atomic orbital electron populations
1.24135 0.95279 1.06497 1.03820 1.23099 0.94263 0.95152 0.96857
1.18051 0.84261 0.99758 0.85952 1.43649 1.56210 1.03918 1.12167
1.19505 1.28864 0.93174 1.05246 0.88529 1.25273 0.94942 0.98686
0.97820 1.70033 1.21066 1.19928 1.38273 0.86151 0.79251 0.79932
0.80253 1.20924 1.19909 1.19958 1.19772 0.82146 0.82288 0.88660
1.90526 1.55614 1.58021 1.44010 1.21986 0.97668 0.97044 0.95591
0.89270 1.22499 0.99058 0.94412 0.99257 1.22979 0.89275 0.99646
0.96985 1.63039 1.22876 1.13915 1.29875 1.21882 0.95953 0.87355
0.96431 0.93498 1.21890 0.94538 1.03129 1.00386 0.78747 0.91991
0.87608 0.91914 0.91744 0.88993 0.90566 0.94721 0.85589 0.89850
0.94293 0.91726
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.28 -6.39 19.25 29.55 0.57 -5.82 16
2 C -0.09 -2.28 11.47 -37.12 -0.43 -2.70 16
3 C 0.24 5.88 5.06 -6.83 -0.03 5.85 16
4 N -0.44 -10.80 2.10 -117.93 -0.25 -11.05 16
5 C -0.34 -8.22 8.39 -14.93 -0.13 -8.35 16
6 H 0.10 2.21 5.91 -52.49 -0.31 1.90 16
7 C 0.04 0.93 5.02 -17.47 -0.09 0.84 16
8 N -0.86 -21.61 9.20 55.50 0.51 -21.10 16
9 Si 0.92 18.88 29.58 -169.99 -5.03 13.85 16
10 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16
11 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16
12 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16
13 C 0.48 11.49 4.53 -10.98 -0.05 11.44 16
14 O -0.60 -15.69 14.75 5.55 0.08 -15.61 16
15 C -0.10 -2.02 2.69 -90.42 -0.24 -2.26 16
16 H 0.09 1.73 6.19 -51.93 -0.32 1.41 16
17 C -0.11 -1.99 6.55 -24.87 -0.16 -2.16 16
18 C 0.04 0.60 7.55 -1.89 -0.01 0.58 16
19 N -0.67 -11.05 7.15 -103.12 -0.74 -11.79 16
20 C 0.09 1.77 3.90 -66.64 -0.26 1.51 16
21 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16
22 C -0.14 -3.02 8.37 37.16 0.31 -2.71 16
23 H 0.20 3.71 7.80 -54.10 -0.42 3.28 16
24 H 0.06 1.46 7.61 -51.93 -0.40 1.06 16
25 H 0.11 2.59 6.43 -51.93 -0.33 2.25 16
26 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16
27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
28 H 0.09 1.83 6.84 -51.93 -0.36 1.48 16
29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16
30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16
31 H 0.33 4.56 8.92 -39.29 -0.35 4.21 16
32 H 0.08 2.03 6.44 -51.93 -0.33 1.70 16
33 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16
34 H 0.06 1.54 7.05 -51.93 -0.37 1.17 16
LS Contribution 279.09 15.07 4.21 4.21
Total: -1.00 -28.33 279.09 -6.17 -34.50
By element:
Atomic # 1 Polarization: 15.19 SS G_CDS: -4.44 Total: 10.76 kcal
Atomic # 6 Polarization: -3.26 SS G_CDS: -0.52 Total: -3.78 kcal
Atomic # 7 Polarization: -43.45 SS G_CDS: -0.47 Total: -43.93 kcal
Atomic # 8 Polarization: -15.69 SS G_CDS: 0.08 Total: -15.61 kcal
Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal
Total LS contribution 4.21 Total: 4.21 kcal
Total: -28.33 -6.17 -34.50 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300872936.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.136 kcal
(2) G-P(sol) polarization free energy of solvation -28.326 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.810 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.501 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.635 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds