Wall clock time and date at job start Mon Mar 30 2020 03:38:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17397 * 1
3 3 C 1.47210 * 179.97438 * 2 1
4 4 N 1.46490 * 109.47156 * 67.00074 * 3 2 1
5 5 C 1.37096 * 120.00217 * 96.08960 * 4 3 2
6 6 H 1.08001 * 120.00243 * 159.49207 * 5 4 3
7 7 C 1.38950 * 119.99726 * 339.49157 * 5 4 3
8 8 N 1.31417 * 120.00378 * 345.27777 * 7 5 4
9 9 Si 1.86806 * 120.00221 * 165.28056 * 7 5 4
10 10 H 1.48491 * 109.47543 * 180.02562 * 9 7 5
11 11 H 1.48504 * 109.46701 * 300.00176 * 9 7 5
12 12 H 1.48498 * 109.46857 * 59.99459 * 9 7 5
13 13 C 1.34777 * 120.00029 * 276.08793 * 4 3 2
14 14 O 1.21284 * 119.99930 * 0.02562 * 13 4 3
15 15 C 1.50707 * 119.99979 * 180.02562 * 13 4 3
16 16 H 1.08992 * 110.27524 * 32.25636 * 15 13 4
17 17 C 1.54589 * 110.30747 * 154.45505 * 15 13 4
18 18 C 1.54941 * 102.92310 * 140.87214 * 17 15 13
19 19 N 1.48539 * 103.22336 * 322.58263 * 18 17 15
20 20 C 1.47906 * 105.81778 * 39.20930 * 19 18 17
21 21 H 1.08993 * 109.92159 * 94.02285 * 20 19 18
22 22 C 1.53003 * 110.07704 * 215.22361 * 20 19 18
23 23 H 4.40640 * 5.51388 * 180.02562 * 4 1 2
24 24 H 1.09000 * 109.46851 * 306.99826 * 3 2 1
25 25 H 1.09000 * 109.46506 * 187.00258 * 3 2 1
26 26 H 0.96993 * 120.00464 * 180.02562 * 8 7 5
27 27 H 1.09004 * 110.72761 * 259.22580 * 17 15 13
28 28 H 1.09004 * 110.72898 * 22.51523 * 17 15 13
29 29 H 1.09002 * 110.66863 * 204.15458 * 18 17 15
30 30 H 1.08995 * 110.66797 * 81.01346 * 18 17 15
31 31 H 1.00896 * 110.99822 * 159.71704 * 19 18 17
32 32 H 1.09005 * 109.46903 * 177.90757 * 22 20 19
33 33 H 1.09001 * 109.47368 * 297.90407 * 22 20 19
34 34 H 1.08994 * 109.47409 * 57.90687 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 7 3.1346 -0.5388 -1.2713
5 6 3.4815 0.3120 -2.2889
6 1 4.1347 -0.0287 -3.0786
7 6 2.9926 1.6126 -2.3041
8 7 1.9866 1.9456 -1.5270
9 14 3.7654 2.8878 -3.4294
10 1 3.0675 4.1872 -3.2580
11 1 5.2007 3.0480 -3.0837
12 1 3.6429 2.4419 -4.8405
13 6 3.2431 -1.8714 -1.4407
14 8 2.9359 -2.6241 -0.5407
15 6 3.7463 -2.4263 -2.7484
16 1 4.4701 -1.7444 -3.1945
17 6 4.3809 -3.8192 -2.5315
18 6 3.9153 -4.6103 -3.7797
19 7 2.5314 -4.1168 -3.9981
20 6 2.5714 -2.6657 -3.7148
21 1 2.7321 -2.1111 -4.6392
22 6 1.2609 -2.2216 -3.0620
23 1 -1.0499 0.0001 -0.0002
24 1 3.0096 -0.6176 0.8208
25 1 3.0088 1.0209 0.1253
26 1 1.6451 2.8534 -1.5379
27 1 5.4682 -3.7476 -2.5038
28 1 4.0001 -4.2788 -1.6194
29 1 3.9143 -5.6815 -3.5780
30 1 4.5458 -4.3799 -4.6385
31 1 2.2302 -4.2921 -4.9449
32 1 1.3153 -1.1593 -2.8238
33 1 0.4342 -2.3976 -3.7503
34 1 1.0994 -2.7913 -2.1469
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000300872936.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:29
Heat of formation + Delta-G solvation = 19.289650 kcal
Electronic energy + Delta-G solvation = -17607.136524 eV
Core-core repulsion = 14927.374684 eV
Total energy + Delta-G solvation = -2679.761839 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.24080 -38.68205 -36.85913 -33.75818 -33.28059 -32.12804 -31.42373 -28.36023
-26.84620 -26.13924 -22.48361 -22.05467 -20.52125 -19.22823 -18.38243 -18.07730
-17.39706 -16.29626 -16.17715 -15.99767 -15.42869 -14.91838 -14.53861 -14.18492
-13.78601 -13.36507 -13.27291 -13.15641 -12.98774 -12.74898 -12.62765 -12.47194
-12.20211 -12.07523 -11.69559 -11.45578 -11.15887 -11.14468 -10.54987 -10.22142
-9.75908 -9.41515 -8.18944 -5.88538 1.45452 1.51062 1.58522 1.93283
2.18040 2.36412 2.46492 3.13189 3.18892 3.30495 3.81904 3.84263
3.96945 4.22437 4.31043 4.46443 4.51865 4.66797 4.77270 4.81640
4.85796 4.97864 5.00246 5.11051 5.17444 5.33822 5.42456 5.47561
5.50698 5.85315 5.90846 6.43582 6.56815 7.16242 7.18852 7.61017
8.02155 8.79063
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.022976 B = 0.010731 C = 0.008795
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1218.373825 B = 2608.530078 C = 3182.935782
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.267 4.267
2 C -0.133 4.133
3 C 0.243 3.757
4 N -0.448 5.448
5 C -0.353 4.353
6 H 0.110 0.890
7 C -0.001 4.001
8 N -0.882 5.882
9 Si 0.984 3.016
10 H -0.290 1.290
11 H -0.268 1.268
12 H -0.266 1.266
13 C 0.474 3.526
14 O -0.631 6.631
15 C -0.103 4.103
16 H 0.097 0.903
17 C -0.114 4.114
18 C 0.049 3.951
19 N -0.679 5.679
20 C 0.098 3.902
21 H 0.064 0.936
22 C -0.128 4.128
23 H 0.230 0.770
24 H 0.057 0.943
25 H 0.098 0.902
26 H 0.267 0.733
27 H 0.087 0.913
28 H 0.061 0.939
29 H 0.094 0.906
30 H 0.064 0.936
31 H 0.348 0.652
32 H 0.049 0.951
33 H 0.057 0.943
34 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.565 -4.363 -6.515 8.613
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.285 4.285
2 C -0.135 4.135
3 C 0.120 3.880
4 N -0.166 5.166
5 C -0.480 4.480
6 H 0.127 0.873
7 C -0.204 4.204
8 N -0.519 5.519
9 Si 0.808 3.192
10 H -0.216 1.216
11 H -0.193 1.193
12 H -0.191 1.191
13 C 0.264 3.736
14 O -0.519 6.519
15 C -0.125 4.125
16 H 0.115 0.885
17 C -0.152 4.152
18 C -0.079 4.079
19 N -0.310 5.310
20 C -0.012 4.012
21 H 0.082 0.918
22 C -0.186 4.186
23 H 0.247 0.753
24 H 0.075 0.925
25 H 0.116 0.884
26 H 0.077 0.923
27 H 0.105 0.895
28 H 0.079 0.921
29 H 0.112 0.888
30 H 0.083 0.917
31 H 0.165 0.835
32 H 0.068 0.932
33 H 0.076 0.924
34 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges 3.045 -4.729 -5.393 7.792
hybrid contribution 0.225 1.441 -0.905 1.717
sum 3.269 -3.288 -6.298 7.821
Atomic orbital electron populations
1.25004 0.96288 1.04904 1.02296 1.23446 0.95027 0.96655 0.98354
1.17952 0.84627 0.99107 0.86272 1.43845 1.56041 1.04475 1.12206
1.19848 1.29149 0.93463 1.05505 0.87292 1.26058 0.95055 1.00160
0.99110 1.70173 1.22120 1.19938 1.39632 0.85123 0.78370 0.77006
0.78665 1.21566 1.19254 1.19112 1.20472 0.81550 0.81825 0.89719
1.90492 1.57114 1.58716 1.45555 1.22053 0.98407 0.98401 0.93621
0.88454 1.22505 1.00267 0.93004 0.99428 1.23018 0.88424 1.00063
0.96443 1.62917 1.24463 1.12042 1.31550 1.21762 0.93792 0.89246
0.96376 0.91801 1.21685 0.97066 1.00301 0.99525 0.75335 0.92499
0.88434 0.92266 0.89458 0.92074 0.88823 0.91749 0.83499 0.93196
0.92449 0.95059
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.27 -12.27 19.25 74.32 1.43 -10.84 16
2 C -0.13 -6.76 11.47 31.13 0.36 -6.40 16
3 C 0.24 12.26 5.06 84.58 0.43 12.69 16
4 N -0.45 -22.36 2.10 -645.42 -1.35 -23.71 16
5 C -0.35 -16.97 8.39 84.04 0.71 -16.26 16
6 H 0.11 4.85 5.91 -2.91 -0.02 4.84 16
7 C 0.00 -0.04 5.02 84.93 0.43 0.39 16
8 N -0.88 -44.92 9.20 21.66 0.20 -44.72 16
9 Si 0.98 38.03 29.58 68.60 2.03 40.06 16
10 H -0.29 -11.41 7.11 99.48 0.71 -10.71 16
11 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16
12 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16
13 C 0.47 22.92 4.53 87.66 0.40 23.32 16
14 O -0.63 -34.31 14.75 -3.04 -0.04 -34.35 16
15 C -0.10 -4.01 2.69 -10.66 -0.03 -4.04 16
16 H 0.10 3.59 6.19 -2.39 -0.01 3.57 16
17 C -0.11 -3.78 6.55 31.80 0.21 -3.57 16
18 C 0.05 1.28 7.55 86.65 0.65 1.93 16
19 N -0.68 -20.55 7.15 -480.18 -3.43 -23.99 16
20 C 0.10 3.54 3.90 45.06 0.18 3.72 16
21 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16
22 C -0.13 -5.43 8.37 71.98 0.60 -4.83 16
23 H 0.23 8.41 7.80 -4.42 -0.03 8.38 16
24 H 0.06 2.83 7.61 -2.39 -0.02 2.81 16
25 H 0.10 4.98 6.43 -2.39 -0.02 4.96 16
26 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16
27 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16
28 H 0.06 2.42 6.84 -2.39 -0.02 2.41 16
29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16
30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16
31 H 0.35 8.37 8.92 -89.70 -0.80 7.57 16
32 H 0.05 2.45 6.44 -2.38 -0.02 2.43 16
33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16
34 H 0.03 1.50 7.05 -2.39 -0.02 1.48 16
Total: -1.00 -61.90 279.09 3.06 -58.85
By element:
Atomic # 1 Polarization: 31.43 SS G_CDS: 0.30 Total: 31.74 kcal
Atomic # 6 Polarization: -9.23 SS G_CDS: 5.36 Total: -3.88 kcal
Atomic # 7 Polarization: -87.83 SS G_CDS: -4.59 Total: -92.42 kcal
Atomic # 8 Polarization: -34.31 SS G_CDS: -0.04 Total: -34.35 kcal
Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal
Total: -61.90 3.06 -58.85 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300872936.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.137 kcal
(2) G-P(sol) polarization free energy of solvation -61.903 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.234 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.056 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.847 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.290 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds