Wall clock time and date at job start Mon Mar 30 2020 03:38:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17404 * 1
3 3 C 1.47196 * 179.97438 * 2 1
4 4 N 1.46500 * 109.47148 * 195.35637 * 3 2 1
5 5 C 1.37094 * 119.99900 * 276.39497 * 4 3 2
6 6 H 1.07998 * 119.99827 * 141.46671 * 5 4 3
7 7 C 1.38951 * 120.00187 * 321.46926 * 5 4 3
8 8 N 1.31415 * 119.99862 * 155.39985 * 7 5 4
9 9 Si 1.86801 * 119.99916 * 335.40135 * 7 5 4
10 10 H 1.48497 * 109.46953 * 95.65130 * 9 7 5
11 11 H 1.48498 * 109.46971 * 215.64967 * 9 7 5
12 12 H 1.48493 * 109.46956 * 335.64812 * 9 7 5
13 13 C 1.34775 * 119.99932 * 96.39908 * 4 3 2
14 14 O 1.21295 * 120.00061 * 179.97438 * 13 4 3
15 15 C 1.50706 * 120.00018 * 359.97438 * 13 4 3
16 16 H 1.08999 * 110.90178 * 56.13650 * 15 13 4
17 17 C 1.55140 * 110.98962 * 292.26638 * 15 13 4
18 18 C 1.54320 * 103.01690 * 206.25585 * 17 15 13
19 19 N 1.47439 * 107.23452 * 22.28553 * 18 17 15
20 20 C 1.47848 * 108.56803 * 0.99036 * 19 18 17
21 21 H 1.09000 * 110.37674 * 94.73249 * 20 19 18
22 22 C 1.53004 * 110.37310 * 217.07557 * 20 19 18
23 23 H 4.40642 * 5.51524 * 179.97438 * 4 1 2
24 24 H 1.08999 * 109.47396 * 75.35405 * 3 2 1
25 25 H 1.09008 * 109.46954 * 315.35717 * 3 2 1
26 26 H 0.96992 * 119.99904 * 180.02562 * 8 7 5
27 27 H 1.09002 * 110.70288 * 87.87227 * 17 15 13
28 28 H 1.08994 * 110.70628 * 324.63888 * 17 15 13
29 29 H 1.09002 * 109.88771 * 262.88028 * 18 17 15
30 30 H 1.08998 * 109.89049 * 141.69192 * 18 17 15
31 31 H 1.00897 * 111.00049 * 123.25892 * 19 18 17
32 32 H 1.09003 * 109.47299 * 58.54413 * 22 20 19
33 33 H 1.08997 * 109.46756 * 178.54150 * 22 20 19
34 34 H 1.08992 * 109.47004 * 298.54282 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1337 1.3328 0.3658
5 6 3.2371 2.3110 -0.5892
6 1 2.9812 3.3317 -0.3464
7 6 3.6710 1.9891 -1.8694
8 7 3.3318 2.7469 -2.8880
9 14 4.7365 0.4792 -2.1424
10 1 3.8795 -0.6654 -2.5432
11 1 5.7242 0.7579 -3.2157
12 1 5.4527 0.1450 -0.8852
13 6 3.4809 1.5966 1.6411
14 8 3.8852 2.6994 1.9438
15 6 3.3668 0.5214 2.6909
16 1 3.9360 -0.3631 2.4051
17 6 1.8815 0.1634 2.9606
18 6 1.9085 -0.3621 4.4113
19 7 3.1154 0.1902 5.0536
20 6 3.8182 1.0482 4.0760
21 1 3.5203 2.0892 4.2015
22 6 5.3333 0.9038 4.2329
23 1 -1.0502 -0.0003 -0.0003
24 1 3.0095 -0.2590 -0.9942
25 1 3.0097 -0.7304 0.7222
26 1 3.6344 2.5220 -3.7817
27 1 1.5419 -0.6134 2.2755
28 1 1.2514 1.0494 2.8833
29 1 1.9543 -1.4511 4.4104
30 1 1.0186 -0.0266 4.9438
31 1 2.8769 0.7097 5.8850
32 1 5.6157 -0.1392 4.0894
33 1 5.8360 1.5219 3.4891
34 1 5.6274 1.2258 5.2318
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300872939.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:32
Heat of formation + Delta-G solvation = 37.722975 kcal
Electronic energy + Delta-G solvation = -17340.611133 eV
Core-core repulsion = 14661.648622 eV
Total energy + Delta-G solvation = -2678.962510 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.71562 -37.39223 -35.37757 -32.70515 -31.64677 -31.00781 -30.24427 -26.76579
-25.98579 -24.50903 -21.42764 -20.42486 -18.79442 -18.36088 -16.99591 -16.65173
-15.89076 -15.46890 -14.64858 -14.18181 -13.85981 -13.52376 -13.33787 -13.05783
-12.72844 -12.61713 -12.16587 -11.93185 -11.63157 -11.36097 -11.12788 -10.94683
-10.80102 -10.57982 -10.42025 -10.22465 -9.76305 -9.53410 -9.12718 -8.53467
-8.32603 -7.90598 -6.45495 -4.02087 2.97397 3.15720 3.18015 3.21830
3.36883 3.64040 4.10419 4.22732 4.52873 4.80442 4.84427 4.96974
5.13242 5.20499 5.45694 5.50428 5.64729 5.74969 5.82342 5.88525
5.98074 5.99217 6.08065 6.23690 6.29542 6.40554 6.42678 6.59572
7.01560 7.46036 7.49861 8.11660 8.23977 8.42761 8.89799 9.24626
9.68259 10.66551
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.026856 B = 0.009705 C = 0.008326
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1042.359871 B = 2884.300732 C = 3362.184761
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C -0.168 4.168
3 C 0.193 3.807
4 N -0.460 5.460
5 C -0.319 4.319
6 H 0.104 0.896
7 C 0.065 3.935
8 N -0.856 5.856
9 Si 0.862 3.138
10 H -0.273 1.273
11 H -0.282 1.282
12 H -0.260 1.260
13 C 0.481 3.519
14 O -0.555 6.555
15 C -0.115 4.115
16 H 0.096 0.904
17 C -0.133 4.133
18 C 0.050 3.950
19 N -0.684 5.684
20 C 0.091 3.909
21 H 0.067 0.933
22 C -0.130 4.130
23 H 0.212 0.788
24 H 0.088 0.912
25 H 0.089 0.911
26 H 0.274 0.726
27 H 0.081 0.919
28 H 0.070 0.930
29 H 0.073 0.927
30 H 0.049 0.951
31 H 0.336 0.664
32 H 0.055 0.945
33 H 0.064 0.936
34 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.429 -9.123 9.800 13.607
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C -0.169 4.169
3 C 0.070 3.930
4 N -0.181 5.181
5 C -0.446 4.446
6 H 0.122 0.878
7 C -0.141 4.141
8 N -0.491 5.491
9 Si 0.689 3.311
10 H -0.200 1.200
11 H -0.208 1.208
12 H -0.184 1.184
13 C 0.269 3.731
14 O -0.436 6.436
15 C -0.137 4.137
16 H 0.114 0.886
17 C -0.172 4.172
18 C -0.080 4.080
19 N -0.313 5.313
20 C -0.018 4.018
21 H 0.085 0.915
22 C -0.188 4.188
23 H 0.229 0.771
24 H 0.105 0.895
25 H 0.107 0.893
26 H 0.085 0.915
27 H 0.100 0.900
28 H 0.089 0.911
29 H 0.091 0.909
30 H 0.068 0.932
31 H 0.151 0.849
32 H 0.074 0.926
33 H 0.083 0.917
34 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -1.768 -9.054 9.632 13.337
hybrid contribution -0.371 -0.043 -0.557 0.671
sum -2.139 -9.097 9.075 13.026
Atomic orbital electron populations
1.24681 0.95614 1.00924 1.02497 1.23573 0.94724 0.99670 0.98965
1.18905 0.84322 0.87965 1.01832 1.43639 1.56487 1.10172 1.07798
1.18960 1.45177 0.91302 0.89155 0.87813 1.25330 0.96080 0.97596
0.95142 1.69791 1.40411 1.39588 0.99296 0.87152 0.81821 0.82927
0.79189 1.19972 1.20822 1.18358 1.20023 0.80622 0.89078 0.83393
1.90557 1.48466 1.24319 1.80218 1.22467 0.97242 0.98908 0.95090
0.88558 1.22891 0.95623 1.01855 0.96829 1.22562 0.91550 1.00163
0.93698 1.61846 1.23241 1.38420 1.07824 1.22126 0.95052 0.95646
0.88965 0.91539 1.21645 0.94104 1.01707 1.01383 0.77090 0.89452
0.89296 0.91514 0.89999 0.91097 0.90862 0.93210 0.84895 0.92635
0.91691 0.93000
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.22 -3.69 19.25 29.55 0.57 -3.12 16
2 C -0.17 -3.26 11.26 -37.12 -0.42 -3.67 16
3 C 0.19 3.94 4.45 -6.83 -0.03 3.91 16
4 N -0.46 -11.15 2.12 -117.93 -0.25 -11.40 16
5 C -0.32 -9.06 9.25 -14.93 -0.14 -9.19 16
6 H 0.10 3.32 7.93 -52.49 -0.42 2.91 16
7 C 0.07 1.80 5.29 -17.47 -0.09 1.71 16
8 N -0.86 -24.70 13.96 55.50 0.77 -23.92 16
9 Si 0.86 20.08 25.24 -169.99 -4.29 15.79 16
10 H -0.27 -5.91 6.67 56.52 0.38 -5.54 16
11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
12 H -0.26 -5.92 7.11 56.52 0.40 -5.52 16
13 C 0.48 11.12 7.00 -10.98 -0.08 11.05 16
14 O -0.55 -14.77 15.60 5.54 0.09 -14.68 16
15 C -0.11 -2.03 1.82 -89.63 -0.16 -2.20 16
16 H 0.10 1.60 7.18 -51.93 -0.37 1.23 16
17 C -0.13 -2.05 5.12 -24.91 -0.13 -2.17 16
18 C 0.05 0.63 7.58 -2.84 -0.02 0.61 16
19 N -0.68 -9.23 7.05 -103.84 -0.73 -9.96 16
20 C 0.09 1.49 3.02 -66.18 -0.20 1.29 16
21 H 0.07 1.21 7.40 -51.93 -0.38 0.82 16
22 C -0.13 -1.99 9.59 37.16 0.36 -1.64 16
23 H 0.21 2.66 7.80 -54.08 -0.42 2.24 16
24 H 0.09 1.88 3.33 -51.93 -0.17 1.70 16
25 H 0.09 1.51 5.61 -51.92 -0.29 1.22 16
26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16
27 H 0.08 1.20 5.72 -51.93 -0.30 0.90 16
28 H 0.07 1.20 8.03 -51.93 -0.42 0.78 16
29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
31 H 0.34 3.92 8.91 -39.29 -0.35 3.57 16
32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16
33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16
34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
LS Contribution 279.41 15.07 4.21 4.21
Total: -1.00 -31.43 279.41 -4.94 -36.38
By element:
Atomic # 1 Polarization: 11.42 SS G_CDS: -4.40 Total: 7.03 kcal
Atomic # 6 Polarization: -3.09 SS G_CDS: -0.34 Total: -3.44 kcal
Atomic # 7 Polarization: -45.07 SS G_CDS: -0.21 Total: -45.28 kcal
Atomic # 8 Polarization: -14.77 SS G_CDS: 0.09 Total: -14.68 kcal
Atomic # 14 Polarization: 20.08 SS G_CDS: -4.29 Total: 15.79 kcal
Total LS contribution 4.21 Total: 4.21 kcal
Total: -31.43 -4.94 -36.38 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300872939.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.098 kcal
(2) G-P(sol) polarization free energy of solvation -31.434 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.664 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.723 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds