Wall clock time and date at job start Mon Mar 30 2020 03:38:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17404 * 1
3 3 C 1.47196 * 179.97438 * 2 1
4 4 N 1.46500 * 109.47148 * 195.35637 * 3 2 1
5 5 C 1.37094 * 119.99900 * 276.39497 * 4 3 2
6 6 H 1.07998 * 119.99827 * 141.46671 * 5 4 3
7 7 C 1.38951 * 120.00187 * 321.46926 * 5 4 3
8 8 N 1.31415 * 119.99862 * 155.39985 * 7 5 4
9 9 Si 1.86801 * 119.99916 * 335.40135 * 7 5 4
10 10 H 1.48497 * 109.46953 * 95.65130 * 9 7 5
11 11 H 1.48498 * 109.46971 * 215.64967 * 9 7 5
12 12 H 1.48493 * 109.46956 * 335.64812 * 9 7 5
13 13 C 1.34775 * 119.99932 * 96.39908 * 4 3 2
14 14 O 1.21295 * 120.00061 * 179.97438 * 13 4 3
15 15 C 1.50706 * 120.00018 * 359.97438 * 13 4 3
16 16 H 1.08999 * 110.90178 * 56.13650 * 15 13 4
17 17 C 1.55140 * 110.98962 * 292.26638 * 15 13 4
18 18 C 1.54320 * 103.01690 * 206.25585 * 17 15 13
19 19 N 1.47439 * 107.23452 * 22.28553 * 18 17 15
20 20 C 1.47848 * 108.56803 * 0.99036 * 19 18 17
21 21 H 1.09000 * 110.37674 * 94.73249 * 20 19 18
22 22 C 1.53004 * 110.37310 * 217.07557 * 20 19 18
23 23 H 4.40642 * 5.51524 * 179.97438 * 4 1 2
24 24 H 1.08999 * 109.47396 * 75.35405 * 3 2 1
25 25 H 1.09008 * 109.46954 * 315.35717 * 3 2 1
26 26 H 0.96992 * 119.99904 * 180.02562 * 8 7 5
27 27 H 1.09002 * 110.70288 * 87.87227 * 17 15 13
28 28 H 1.08994 * 110.70628 * 324.63888 * 17 15 13
29 29 H 1.09002 * 109.88771 * 262.88028 * 18 17 15
30 30 H 1.08998 * 109.89049 * 141.69192 * 18 17 15
31 31 H 1.00897 * 111.00049 * 123.25892 * 19 18 17
32 32 H 1.09003 * 109.47299 * 58.54413 * 22 20 19
33 33 H 1.08997 * 109.46756 * 178.54150 * 22 20 19
34 34 H 1.08992 * 109.47004 * 298.54282 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1337 1.3328 0.3658
5 6 3.2371 2.3110 -0.5892
6 1 2.9812 3.3317 -0.3464
7 6 3.6710 1.9891 -1.8694
8 7 3.3318 2.7469 -2.8880
9 14 4.7365 0.4792 -2.1424
10 1 3.8795 -0.6654 -2.5432
11 1 5.7242 0.7579 -3.2157
12 1 5.4527 0.1450 -0.8852
13 6 3.4809 1.5966 1.6411
14 8 3.8852 2.6994 1.9438
15 6 3.3668 0.5214 2.6909
16 1 3.9360 -0.3631 2.4051
17 6 1.8815 0.1634 2.9606
18 6 1.9085 -0.3621 4.4113
19 7 3.1154 0.1902 5.0536
20 6 3.8182 1.0482 4.0760
21 1 3.5203 2.0892 4.2015
22 6 5.3333 0.9038 4.2329
23 1 -1.0502 -0.0003 -0.0003
24 1 3.0095 -0.2590 -0.9942
25 1 3.0097 -0.7304 0.7222
26 1 3.6344 2.5220 -3.7817
27 1 1.5419 -0.6134 2.2755
28 1 1.2514 1.0494 2.8833
29 1 1.9543 -1.4511 4.4104
30 1 1.0186 -0.0266 4.9438
31 1 2.8769 0.7097 5.8850
32 1 5.6157 -0.1392 4.0894
33 1 5.8360 1.5219 3.4891
34 1 5.6274 1.2258 5.2318
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000300872939.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:31
Heat of formation + Delta-G solvation = 14.143147 kcal
Electronic energy + Delta-G solvation = -17341.633631 eV
Core-core repulsion = 14661.648622 eV
Total energy + Delta-G solvation = -2679.985008 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.32329 -38.84283 -37.21082 -34.59378 -33.34957 -32.20423 -31.61169 -28.42726
-27.50399 -26.16317 -22.83739 -21.74142 -20.35402 -20.05958 -18.59438 -18.31045
-17.67984 -16.88831 -16.19586 -15.73998 -15.39518 -14.95285 -14.89895 -14.61575
-14.32946 -14.25509 -13.86283 -13.25873 -13.06903 -12.84995 -12.71140 -12.40774
-12.33395 -12.04484 -11.84301 -11.72079 -11.34470 -11.15896 -10.95018 -10.38327
-9.91973 -9.42979 -8.57663 -6.20173 1.14289 1.27706 1.40376 1.65995
1.88292 1.93964 2.13878 2.74689 2.87050 3.21434 3.56818 3.67101
3.69026 3.88323 4.05235 4.26674 4.28791 4.36253 4.45584 4.55334
4.73953 4.83108 4.86447 5.05572 5.08686 5.09952 5.21618 5.36051
5.46987 5.86152 5.98322 6.43264 6.49845 6.74418 6.86600 7.20030
7.76215 8.59684
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.026856 B = 0.009705 C = 0.008326
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1042.359871 B = 2884.300732 C = 3362.184761
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.224 4.224
3 C 0.192 3.808
4 N -0.470 5.470
5 C -0.338 4.338
6 H 0.041 0.959
7 C 0.019 3.981
8 N -0.902 5.902
9 Si 0.933 3.067
10 H -0.239 1.239
11 H -0.281 1.281
12 H -0.251 1.251
13 C 0.474 3.526
14 O -0.604 6.604
15 C -0.111 4.111
16 H 0.118 0.882
17 C -0.127 4.127
18 C 0.055 3.945
19 N -0.675 5.675
20 C 0.094 3.906
21 H 0.037 0.963
22 C -0.126 4.126
23 H 0.252 0.748
24 H 0.078 0.922
25 H 0.126 0.874
26 H 0.281 0.719
27 H 0.094 0.906
28 H 0.047 0.953
29 H 0.095 0.905
30 H 0.069 0.931
31 H 0.348 0.652
32 H 0.070 0.930
33 H 0.037 0.963
34 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.985 -12.800 11.021 17.153
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.226 4.226
3 C 0.071 3.929
4 N -0.191 5.191
5 C -0.466 4.466
6 H 0.059 0.941
7 C -0.185 4.185
8 N -0.539 5.539
9 Si 0.755 3.245
10 H -0.164 1.164
11 H -0.207 1.207
12 H -0.175 1.175
13 C 0.264 3.736
14 O -0.488 6.488
15 C -0.133 4.133
16 H 0.135 0.865
17 C -0.166 4.166
18 C -0.074 4.074
19 N -0.305 5.305
20 C -0.016 4.016
21 H 0.055 0.945
22 C -0.184 4.184
23 H 0.269 0.731
24 H 0.096 0.904
25 H 0.143 0.857
26 H 0.091 0.909
27 H 0.113 0.887
28 H 0.066 0.934
29 H 0.114 0.886
30 H 0.088 0.912
31 H 0.165 0.835
32 H 0.089 0.911
33 H 0.056 0.944
34 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -2.353 -12.761 10.867 16.925
hybrid contribution -0.325 1.220 -0.902 1.552
sum -2.678 -11.540 9.965 15.481
Atomic orbital electron populations
1.25644 0.96488 0.97999 0.99772 1.23608 0.95150 1.02272 1.01524
1.18986 0.85510 0.86151 1.02297 1.43727 1.57039 1.10900 1.07394
1.18521 1.46867 0.90289 0.90879 0.94130 1.26112 0.96518 1.01697
0.94143 1.69895 1.41640 1.42320 1.00040 0.86039 0.79717 0.79377
0.79334 1.16375 1.20679 1.17480 1.21030 0.78890 0.89676 0.84004
1.90521 1.50279 1.26862 1.81147 1.22465 0.99712 0.97343 0.93746
0.86463 1.22866 0.93127 1.01326 0.99245 1.22644 0.91936 1.01236
0.91618 1.61862 1.23682 1.37510 1.07423 1.22000 0.96043 0.94549
0.88984 0.94475 1.21593 0.93145 1.02081 1.01593 0.73145 0.90419
0.85654 0.90904 0.88714 0.93439 0.88640 0.91211 0.83524 0.91125
0.94417 0.91220
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -5.58 19.25 74.32 1.43 -4.15 16
2 C -0.22 -8.28 11.26 31.12 0.35 -7.93 16
3 C 0.19 7.56 4.45 84.57 0.38 7.94 16
4 N -0.47 -23.21 2.12 -645.41 -1.37 -24.57 16
5 C -0.34 -20.22 9.25 84.04 0.78 -19.45 16
6 H 0.04 2.86 7.93 -2.91 -0.02 2.84 16
7 C 0.02 1.06 5.29 84.93 0.45 1.50 16
8 N -0.90 -54.06 13.96 21.66 0.30 -53.76 16
9 Si 0.93 41.33 25.24 68.60 1.73 43.06 16
10 H -0.24 -9.27 6.67 99.48 0.66 -8.61 16
11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16
12 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16
13 C 0.47 22.47 7.00 87.66 0.61 23.09 16
14 O -0.60 -34.10 15.60 -3.08 -0.05 -34.14 16
15 C -0.11 -3.77 1.82 -10.15 -0.02 -3.79 16
16 H 0.12 3.53 7.18 -2.39 -0.02 3.51 16
17 C -0.13 -3.59 5.12 31.78 0.16 -3.43 16
18 C 0.05 1.17 7.58 86.65 0.66 1.82 16
19 N -0.67 -16.06 7.05 -482.44 -3.40 -19.46 16
20 C 0.09 2.96 3.02 45.39 0.14 3.09 16
21 H 0.04 1.38 7.40 -2.39 -0.02 1.36 16
22 C -0.13 -3.69 9.59 71.98 0.69 -3.00 16
23 H 0.25 5.20 7.80 -4.41 -0.03 5.17 16
24 H 0.08 3.17 3.33 -2.39 -0.01 3.16 16
25 H 0.13 3.86 5.61 -2.38 -0.01 3.85 16
26 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16
27 H 0.09 2.44 5.72 -2.39 -0.01 2.42 16
28 H 0.05 1.56 8.03 -2.39 -0.02 1.54 16
29 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16
30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
31 H 0.35 7.06 8.91 -89.70 -0.80 6.26 16
32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16
33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16
34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
Total: -1.00 -73.98 279.41 3.11 -70.87
By element:
Atomic # 1 Polarization: 22.02 SS G_CDS: 0.26 Total: 22.29 kcal
Atomic # 6 Polarization: -9.91 SS G_CDS: 5.63 Total: -4.29 kcal
Atomic # 7 Polarization: -93.33 SS G_CDS: -4.47 Total: -97.79 kcal
Atomic # 8 Polarization: -34.10 SS G_CDS: -0.05 Total: -34.14 kcal
Atomic # 14 Polarization: 41.33 SS G_CDS: 1.73 Total: 43.06 kcal
Total: -73.98 3.11 -70.87 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300872939.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.015 kcal
(2) G-P(sol) polarization free energy of solvation -73.979 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.036 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.872 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.143 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds