Wall clock time and date at job start Mon Mar 30 2020 03:04:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17397 * 1
3 3 C 1.47194 * 179.97438 * 2 1
4 4 N 1.46502 * 109.47246 * 71.37293 * 3 2 1
5 5 C 1.37098 * 119.99638 * 270.78632 * 4 3 2
6 6 H 1.08004 * 120.00061 * 125.04820 * 5 4 3
7 7 C 1.38948 * 120.00405 * 305.04900 * 5 4 3
8 8 N 1.31410 * 120.00494 * 172.29678 * 7 5 4
9 9 Si 1.86802 * 119.99763 * 352.29541 * 7 5 4
10 10 H 1.48510 * 109.46942 * 92.03485 * 9 7 5
11 11 H 1.48500 * 109.47167 * 212.03406 * 9 7 5
12 12 H 1.48500 * 109.47407 * 332.03898 * 9 7 5
13 13 C 1.34767 * 120.00359 * 90.78852 * 4 3 2
14 14 O 1.21293 * 120.00186 * 354.15621 * 13 4 3
15 15 C 1.50701 * 120.00498 * 174.43150 * 13 4 3
16 16 C 1.53005 * 109.47051 * 281.93652 * 15 13 4
17 17 N 1.46904 * 109.46798 * 41.93069 * 15 13 4
18 18 C 1.52991 * 109.47570 * 161.93597 * 15 13 4
19 19 C 1.53001 * 117.49928 * 248.62696 * 18 15 13
20 20 C 1.53004 * 117.50033 * 180.02562 * 18 15 13
21 21 H 4.40643 * 5.51495 * 180.02562 * 4 1 2
22 22 H 1.09005 * 109.47539 * 311.36564 * 3 2 1
23 23 H 1.09005 * 109.46903 * 191.36955 * 3 2 1
24 24 H 0.97001 * 120.00011 * 179.97438 * 8 7 5
25 25 H 1.09004 * 109.46742 * 59.99636 * 16 15 13
26 26 H 1.08994 * 109.47142 * 179.97438 * 16 15 13
27 27 H 1.08991 * 109.46935 * 299.99827 * 16 15 13
28 28 H 1.00895 * 111.00404 * 275.59292 * 17 15 13
29 29 H 1.00905 * 110.99610 * 39.55324 * 17 15 13
30 30 H 1.09005 * 115.55163 * 34.32982 * 18 15 13
31 31 H 1.09001 * 117.49695 * 359.97438 * 19 18 15
32 32 H 1.08994 * 117.50377 * 145.02348 * 19 18 15
33 33 H 1.08997 * 117.49570 * 214.97617 * 20 18 15
34 34 H 1.08992 * 117.49914 * 0.02562 * 20 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6459 0.0007 0.0000
4 7 3.1345 -0.4403 -1.3089
5 6 3.3482 -1.7734 -1.5472
6 1 2.8690 -2.2556 -2.3865
7 6 4.1812 -2.5042 -0.7090
8 7 4.2684 -3.8085 -0.8435
9 14 5.1773 -1.6327 0.6092
10 1 4.4059 -1.6091 1.8780
11 1 6.4572 -2.3553 0.8214
12 1 5.4607 -0.2407 0.1763
13 6 3.3739 0.4644 -2.2786
14 8 3.0856 1.6298 -2.1054
15 6 3.9941 0.0273 -3.5807
16 6 5.4991 -0.1694 -3.3880
17 7 3.3861 -1.2386 -4.0119
18 6 3.7520 1.0984 -4.6459
19 6 2.8022 0.7509 -5.7940
20 6 4.3081 0.8391 -6.0476
21 1 -1.0500 0.0001 -0.0002
22 1 3.0096 -0.6783 0.7713
23 1 3.0088 1.0084 0.2026
24 1 4.8502 -4.3186 -0.2585
25 1 5.6716 -0.9326 -2.6290
26 1 5.9476 -0.4860 -4.3296
27 1 5.9502 0.7697 -3.0680
28 1 3.8385 -2.0256 -3.5715
29 1 2.3936 -1.2436 -3.8298
30 1 3.7523 2.1274 -4.2865
31 1 2.3502 -0.2409 -5.7906
32 1 2.1774 1.5514 -6.1902
33 1 4.6742 1.6977 -6.6104
34 1 4.8460 -0.0947 -6.2108
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300920900.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:39
Heat of formation + Delta-G solvation = 72.756652 kcal
Electronic energy + Delta-G solvation = -17574.374876 eV
Core-core repulsion = 14896.931540 eV
Total energy + Delta-G solvation = -2677.443336 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.71722 -36.99785 -35.29326 -33.46271 -32.42803 -31.51180 -28.43926 -26.80185
-25.17149 -23.58663 -21.70200 -20.26685 -18.59244 -18.31519 -17.17430 -15.94347
-15.73150 -15.13666 -14.65433 -14.30260 -13.80980 -13.50060 -13.11619 -13.08683
-12.62223 -12.11794 -12.04317 -11.48190 -11.38400 -11.12429 -10.93667 -10.84908
-10.46876 -10.31270 -9.90862 -9.78390 -9.52452 -9.46968 -9.21915 -9.04929
-7.99139 -7.51165 -6.55785 -4.45351 2.93797 3.09524 3.16083 3.23934
3.48348 3.59713 3.98952 4.30036 4.54896 4.73900 5.06530 5.30960
5.39271 5.54967 5.58386 5.81362 5.98998 6.07095 6.09399 6.11233
6.18106 6.33731 6.43529 6.50639 6.63047 6.73275 6.80495 6.88409
7.27755 7.88043 7.93072 8.02682 8.23332 8.33745 8.81838 9.11567
9.51021 10.46726
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.022035 B = 0.011651 C = 0.009351
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1270.389071 B = 2402.632099 C = 2993.579599
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C -0.161 4.161
3 C 0.197 3.803
4 N -0.469 5.469
5 C -0.365 4.365
6 H 0.115 0.885
7 C 0.076 3.924
8 N -0.858 5.858
9 Si 0.871 3.129
10 H -0.272 1.272
11 H -0.282 1.282
12 H -0.258 1.258
13 C 0.477 3.523
14 O -0.585 6.585
15 C 0.158 3.842
16 C -0.135 4.135
17 N -0.833 5.833
18 C -0.130 4.130
19 C -0.170 4.170
20 C -0.171 4.171
21 H 0.211 0.789
22 H 0.086 0.914
23 H 0.088 0.912
24 H 0.278 0.722
25 H 0.071 0.929
26 H 0.064 0.936
27 H 0.052 0.948
28 H 0.372 0.628
29 H 0.337 0.663
30 H 0.107 0.893
31 H 0.106 0.894
32 H 0.077 0.923
33 H 0.080 0.920
34 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.331 4.162 -3.113 5.208
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.251 4.251
2 C -0.162 4.162
3 C 0.075 3.925
4 N -0.191 5.191
5 C -0.493 4.493
6 H 0.132 0.868
7 C -0.133 4.133
8 N -0.492 5.492
9 Si 0.697 3.303
10 H -0.198 1.198
11 H -0.209 1.209
12 H -0.181 1.181
13 C 0.265 3.735
14 O -0.466 6.466
15 C 0.062 3.938
16 C -0.193 4.193
17 N -0.372 5.372
18 C -0.149 4.149
19 C -0.207 4.207
20 C -0.208 4.208
21 H 0.228 0.772
22 H 0.104 0.896
23 H 0.106 0.894
24 H 0.088 0.912
25 H 0.090 0.910
26 H 0.083 0.917
27 H 0.071 0.929
28 H 0.194 0.806
29 H 0.151 0.849
30 H 0.125 0.875
31 H 0.125 0.875
32 H 0.095 0.905
33 H 0.099 0.901
34 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges 0.570 4.714 -3.672 6.003
hybrid contribution -0.066 0.026 1.982 1.984
sum 0.504 4.741 -1.690 5.058
Atomic orbital electron populations
1.24646 0.95636 1.03358 1.01492 1.23765 0.94932 0.98206 0.99333
1.18733 0.83845 1.00623 0.89255 1.43690 1.58289 1.07172 1.09907
1.19503 1.29411 0.82690 1.17695 0.86776 1.25578 0.95465 0.95086
0.97191 1.69645 1.36263 1.05273 1.37980 0.86926 0.80220 0.81145
0.81987 1.19816 1.20852 1.18142 1.21770 0.79394 0.85111 0.87235
1.90528 1.55274 1.18961 1.81854 1.19891 0.95043 0.90327 0.88536
1.21762 0.93007 1.01980 1.02517 1.59312 1.08075 1.04102 1.65741
1.22141 1.05071 0.99029 0.88657 1.22837 0.92432 1.02929 1.02517
1.22774 0.96918 1.02347 0.98740 0.77192 0.89649 0.89401 0.91181
0.90994 0.91715 0.92853 0.80585 0.84925 0.87460 0.87533 0.90455
0.90114 0.88603
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.23 -4.38 19.25 29.55 0.57 -3.81 16
2 C -0.16 -3.47 13.67 -37.13 -0.51 -3.98 16
3 C 0.20 4.40 4.59 -6.83 -0.03 4.37 16
4 N -0.47 -10.81 1.86 -117.93 -0.22 -11.03 16
5 C -0.37 -8.67 6.46 -14.93 -0.10 -8.76 16
6 H 0.12 2.78 4.96 -52.48 -0.26 2.51 16
7 C 0.08 1.85 5.41 -17.47 -0.09 1.76 16
8 N -0.86 -21.87 13.96 55.50 0.77 -21.10 16
9 Si 0.87 19.20 25.09 -169.99 -4.27 14.94 16
10 H -0.27 -5.89 6.86 56.52 0.39 -5.50 16
11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
12 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16
13 C 0.48 10.91 6.37 -10.99 -0.07 10.84 16
14 O -0.58 -14.62 15.31 5.55 0.08 -14.53 16
15 C 0.16 3.10 0.79 -132.75 -0.10 3.00 16
16 C -0.13 -2.49 8.27 37.16 0.31 -2.19 16
17 N -0.83 -15.75 6.45 -0.19 0.00 -15.75 16
18 C -0.13 -2.33 4.91 -90.62 -0.45 -2.78 16
19 C -0.17 -2.73 9.85 -26.75 -0.26 -2.99 16
20 C -0.17 -2.58 9.65 -26.75 -0.26 -2.84 16
21 H 0.21 2.98 7.80 -54.09 -0.42 2.56 16
22 H 0.09 1.88 4.49 -51.93 -0.23 1.65 16
23 H 0.09 1.91 7.49 -51.93 -0.39 1.53 16
24 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16
25 H 0.07 1.44 7.33 -51.93 -0.38 1.06 16
26 H 0.06 1.06 7.29 -51.93 -0.38 0.68 16
27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
28 H 0.37 7.60 5.76 -39.29 -0.23 7.38 16
29 H 0.34 6.62 7.49 -39.29 -0.29 6.33 16
30 H 0.11 2.07 7.32 -51.93 -0.38 1.69 16
31 H 0.11 1.75 6.79 -51.93 -0.35 1.40 16
32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16
33 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16
34 H 0.10 1.45 7.61 -51.93 -0.40 1.06 16
LS Contribution 280.05 15.07 4.22 4.22
Total: -1.00 -26.63 280.05 -4.53 -31.16
By element:
Atomic # 1 Polarization: 23.60 SS G_CDS: -4.13 Total: 19.48 kcal
Atomic # 6 Polarization: -6.39 SS G_CDS: -1.00 Total: -7.39 kcal
Atomic # 7 Polarization: -48.43 SS G_CDS: 0.55 Total: -47.88 kcal
Atomic # 8 Polarization: -14.62 SS G_CDS: 0.08 Total: -14.53 kcal
Atomic # 14 Polarization: 19.20 SS G_CDS: -4.27 Total: 14.94 kcal
Total LS contribution 4.22 Total: 4.22 kcal
Total: -26.63 -4.53 -31.16 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300920900.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 103.921 kcal
(2) G-P(sol) polarization free energy of solvation -26.634 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.287 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.531 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.164 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.757 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds