Wall clock time and date at job start Mon Mar 30 2020 03:04:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17397 * 1
3 3 C 1.47194 * 179.97438 * 2 1
4 4 N 1.46502 * 109.47246 * 71.37293 * 3 2 1
5 5 C 1.37098 * 119.99638 * 270.78632 * 4 3 2
6 6 H 1.08004 * 120.00061 * 125.04820 * 5 4 3
7 7 C 1.38948 * 120.00405 * 305.04900 * 5 4 3
8 8 N 1.31410 * 120.00494 * 172.29678 * 7 5 4
9 9 Si 1.86802 * 119.99763 * 352.29541 * 7 5 4
10 10 H 1.48510 * 109.46942 * 92.03485 * 9 7 5
11 11 H 1.48500 * 109.47167 * 212.03406 * 9 7 5
12 12 H 1.48500 * 109.47407 * 332.03898 * 9 7 5
13 13 C 1.34767 * 120.00359 * 90.78852 * 4 3 2
14 14 O 1.21293 * 120.00186 * 354.15621 * 13 4 3
15 15 C 1.50701 * 120.00498 * 174.43150 * 13 4 3
16 16 C 1.53005 * 109.47051 * 281.93652 * 15 13 4
17 17 N 1.46904 * 109.46798 * 41.93069 * 15 13 4
18 18 C 1.52991 * 109.47570 * 161.93597 * 15 13 4
19 19 C 1.53001 * 117.49928 * 248.62696 * 18 15 13
20 20 C 1.53004 * 117.50033 * 180.02562 * 18 15 13
21 21 H 4.40643 * 5.51495 * 180.02562 * 4 1 2
22 22 H 1.09005 * 109.47539 * 311.36564 * 3 2 1
23 23 H 1.09005 * 109.46903 * 191.36955 * 3 2 1
24 24 H 0.97001 * 120.00011 * 179.97438 * 8 7 5
25 25 H 1.09004 * 109.46742 * 59.99636 * 16 15 13
26 26 H 1.08994 * 109.47142 * 179.97438 * 16 15 13
27 27 H 1.08991 * 109.46935 * 299.99827 * 16 15 13
28 28 H 1.00895 * 111.00404 * 275.59292 * 17 15 13
29 29 H 1.00905 * 110.99610 * 39.55324 * 17 15 13
30 30 H 1.09005 * 115.55163 * 34.32982 * 18 15 13
31 31 H 1.09001 * 117.49695 * 359.97438 * 19 18 15
32 32 H 1.08994 * 117.50377 * 145.02348 * 19 18 15
33 33 H 1.08997 * 117.49570 * 214.97617 * 20 18 15
34 34 H 1.08992 * 117.49914 * 0.02562 * 20 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6459 0.0007 0.0000
4 7 3.1345 -0.4403 -1.3089
5 6 3.3482 -1.7734 -1.5472
6 1 2.8690 -2.2556 -2.3865
7 6 4.1812 -2.5042 -0.7090
8 7 4.2684 -3.8085 -0.8435
9 14 5.1773 -1.6327 0.6092
10 1 4.4059 -1.6091 1.8780
11 1 6.4572 -2.3553 0.8214
12 1 5.4607 -0.2407 0.1763
13 6 3.3739 0.4644 -2.2786
14 8 3.0856 1.6298 -2.1054
15 6 3.9941 0.0273 -3.5807
16 6 5.4991 -0.1694 -3.3880
17 7 3.3861 -1.2386 -4.0119
18 6 3.7520 1.0984 -4.6459
19 6 2.8022 0.7509 -5.7940
20 6 4.3081 0.8391 -6.0476
21 1 -1.0500 0.0001 -0.0002
22 1 3.0096 -0.6783 0.7713
23 1 3.0088 1.0084 0.2026
24 1 4.8502 -4.3186 -0.2585
25 1 5.6716 -0.9326 -2.6290
26 1 5.9476 -0.4860 -4.3296
27 1 5.9502 0.7697 -3.0680
28 1 3.8385 -2.0256 -3.5715
29 1 2.3936 -1.2436 -3.8298
30 1 3.7523 2.1274 -4.2865
31 1 2.3502 -0.2409 -5.7906
32 1 2.1774 1.5514 -6.1902
33 1 4.6742 1.6977 -6.6104
34 1 4.8460 -0.0947 -6.2108
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000300920900.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:39
Heat of formation + Delta-G solvation = 56.340415 kcal
Electronic energy + Delta-G solvation = -17575.086737 eV
Core-core repulsion = 14896.931540 eV
Total energy + Delta-G solvation = -2678.155197 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.41990 -38.48844 -37.13007 -34.99449 -34.18748 -33.18687 -29.96948 -28.50773
-26.99180 -25.11452 -22.94453 -21.90862 -20.34687 -19.88020 -18.79382 -17.66375
-17.40471 -16.71858 -16.34003 -15.97467 -15.39001 -15.04193 -14.86278 -14.73893
-14.23169 -13.84087 -13.72401 -13.07876 -12.98639 -12.82115 -12.64739 -12.13637
-12.05900 -11.90163 -11.54811 -11.18903 -11.09444 -11.07393 -10.94659 -10.62518
-9.80456 -9.22051 -8.43690 -6.35562 1.16284 1.29165 1.37552 1.61143
1.82564 1.89577 2.16023 2.74694 2.87116 3.13072 3.56089 3.76770
3.96644 4.07025 4.19347 4.28306 4.33011 4.44652 4.63905 4.65055
4.90423 4.95663 5.03509 5.04357 5.17951 5.30371 5.44416 5.47331
5.54218 6.04262 6.11992 6.32379 6.66973 6.67366 6.95118 7.28341
7.68727 8.59350
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.022035 B = 0.011651 C = 0.009351
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1270.389071 B = 2402.632099 C = 2993.579599
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.228 4.228
3 C 0.194 3.806
4 N -0.473 5.473
5 C -0.356 4.356
6 H 0.107 0.893
7 C 0.049 3.951
8 N -0.887 5.887
9 Si 0.909 3.091
10 H -0.266 1.266
11 H -0.278 1.278
12 H -0.265 1.265
13 C 0.468 3.532
14 O -0.611 6.611
15 C 0.160 3.840
16 C -0.131 4.131
17 N -0.816 5.816
18 C -0.153 4.153
19 C -0.167 4.167
20 C -0.145 4.145
21 H 0.257 0.743
22 H 0.083 0.917
23 H 0.083 0.917
24 H 0.281 0.719
25 H 0.052 0.948
26 H 0.087 0.913
27 H 0.055 0.945
28 H 0.364 0.636
29 H 0.333 0.667
30 H 0.091 0.909
31 H 0.101 0.899
32 H 0.091 0.909
33 H 0.104 0.896
34 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.103 4.521 -3.894 5.968
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.230 4.230
3 C 0.072 3.928
4 N -0.195 5.195
5 C -0.483 4.483
6 H 0.124 0.876
7 C -0.157 4.157
8 N -0.522 5.522
9 Si 0.734 3.266
10 H -0.192 1.192
11 H -0.204 1.204
12 H -0.189 1.189
13 C 0.257 3.743
14 O -0.494 6.494
15 C 0.063 3.937
16 C -0.188 4.188
17 N -0.353 5.353
18 C -0.173 4.173
19 C -0.204 4.204
20 C -0.182 4.182
21 H 0.273 0.727
22 H 0.100 0.900
23 H 0.101 0.899
24 H 0.091 0.909
25 H 0.071 0.929
26 H 0.106 0.894
27 H 0.074 0.926
28 H 0.184 0.816
29 H 0.146 0.854
30 H 0.109 0.891
31 H 0.120 0.880
32 H 0.109 0.891
33 H 0.123 0.877
34 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges 0.134 5.071 -4.451 6.749
hybrid contribution -0.041 -0.047 2.218 2.219
sum 0.093 5.024 -2.234 5.499
Atomic orbital electron populations
1.25690 0.96525 1.00175 0.98307 1.23923 0.95559 1.01175 1.02295
1.18657 0.85144 1.00205 0.88755 1.43809 1.58345 1.06973 1.10352
1.19446 1.28811 0.82830 1.17251 0.87559 1.25924 0.96076 0.95310
0.98437 1.69692 1.37339 1.06095 1.39095 0.86329 0.79519 0.79945
0.80762 1.19219 1.20426 1.18941 1.22477 0.78968 0.84736 0.88160
1.90498 1.56397 1.19991 1.82529 1.19983 0.95327 0.90854 0.87503
1.21741 0.92466 1.01515 1.03108 1.59331 1.07572 1.03547 1.64876
1.21996 1.08323 0.97508 0.89438 1.22898 0.93353 1.03076 1.01112
1.22853 0.96109 1.03304 0.95900 0.72719 0.89962 0.89892 0.90923
0.92896 0.89415 0.92613 0.81561 0.85434 0.89078 0.88049 0.89082
0.87731 0.88301
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -6.65 19.25 74.32 1.43 -5.22 16
2 C -0.23 -9.70 13.67 31.12 0.43 -9.28 16
3 C 0.19 8.73 4.59 84.57 0.39 9.12 16
4 N -0.47 -21.98 1.86 -645.42 -1.20 -23.18 16
5 C -0.36 -16.95 6.46 84.04 0.54 -16.41 16
6 H 0.11 5.21 4.96 -2.91 -0.01 5.19 16
7 C 0.05 2.41 5.41 84.93 0.46 2.86 16
8 N -0.89 -45.27 13.96 21.66 0.30 -44.97 16
9 Si 0.91 39.51 25.09 68.60 1.72 41.23 16
10 H -0.27 -11.25 6.86 99.48 0.68 -10.57 16
11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16
12 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
13 C 0.47 21.50 6.37 87.66 0.56 22.06 16
14 O -0.61 -30.86 15.31 -3.07 -0.05 -30.91 16
15 C 0.16 6.17 0.79 2.78 0.00 6.17 16
16 C -0.13 -4.72 8.27 71.98 0.60 -4.13 16
17 N -0.82 -30.41 6.45 -154.52 -1.00 -31.40 16
18 C -0.15 -5.32 4.91 -10.79 -0.05 -5.38 16
19 C -0.17 -5.02 9.85 30.58 0.30 -4.72 16
20 C -0.14 -3.96 9.65 30.58 0.30 -3.67 16
21 H 0.26 6.08 7.80 -4.42 -0.03 6.05 16
22 H 0.08 3.65 4.49 -2.38 -0.01 3.64 16
23 H 0.08 3.70 7.49 -2.38 -0.02 3.68 16
24 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16
25 H 0.05 2.10 7.33 -2.39 -0.02 2.08 16
26 H 0.09 2.72 7.29 -2.39 -0.02 2.70 16
27 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16
28 H 0.36 14.81 5.76 -89.70 -0.52 14.29 16
29 H 0.33 12.98 7.49 -89.69 -0.67 12.31 16
30 H 0.09 3.48 7.32 -2.38 -0.02 3.46 16
31 H 0.10 3.15 6.79 -2.39 -0.02 3.14 16
32 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16
33 H 0.10 2.39 8.14 -2.39 -0.02 2.38 16
34 H 0.10 2.68 7.61 -2.39 -0.02 2.66 16
Total: -1.00 -56.44 280.05 4.64 -51.80
By element:
Atomic # 1 Polarization: 46.10 SS G_CDS: -0.09 Total: 46.01 kcal
Atomic # 6 Polarization: -13.53 SS G_CDS: 4.95 Total: -8.58 kcal
Atomic # 7 Polarization: -97.65 SS G_CDS: -1.89 Total: -99.55 kcal
Atomic # 8 Polarization: -30.86 SS G_CDS: -0.05 Total: -30.91 kcal
Atomic # 14 Polarization: 39.51 SS G_CDS: 1.72 Total: 41.23 kcal
Total: -56.44 4.64 -51.80 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300920900.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.137 kcal
(2) G-P(sol) polarization free energy of solvation -56.438 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.699 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.797 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.340 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds