Wall clock time and date at job start Mon Mar 30 2020 03:34:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17397 * 1
3 3 C 1.47197 * 179.97438 * 2 1
4 4 N 1.46499 * 109.47159 * 347.04948 * 3 2 1
5 5 C 1.37097 * 120.00048 * 273.84562 * 4 3 2
6 6 H 1.08003 * 120.00025 * 184.29799 * 5 4 3
7 7 C 1.38951 * 119.99911 * 4.28801 * 5 4 3
8 8 N 1.31407 * 119.99868 * 25.51546 * 7 5 4
9 9 Si 1.86801 * 120.00010 * 205.50553 * 7 5 4
10 10 H 1.48500 * 109.46913 * 60.00398 * 9 7 5
11 11 H 1.48506 * 109.46976 * 180.02562 * 9 7 5
12 12 H 1.48496 * 109.47295 * 300.00694 * 9 7 5
13 13 C 1.34777 * 120.00289 * 93.84757 * 4 3 2
14 14 O 1.21291 * 120.00405 * 179.97438 * 13 4 3
15 15 C 1.50706 * 119.99700 * 359.97438 * 13 4 3
16 16 H 1.08994 * 110.43425 * 61.08719 * 15 13 4
17 17 C 1.54891 * 110.48773 * 298.54859 * 15 13 4
18 18 C 1.54883 * 102.75022 * 203.38121 * 17 15 13
19 19 C 1.54269 * 104.19813 * 37.94158 * 18 17 15
20 20 C 1.53882 * 106.59580 * 336.39373 * 19 18 17
21 21 H 1.08996 * 110.07099 * 119.30830 * 20 19 18
22 22 N 1.46902 * 110.02777 * 240.71594 * 20 19 18
23 23 H 4.40634 * 5.51443 * 180.02562 * 4 1 2
24 24 H 1.09000 * 109.47371 * 227.05168 * 3 2 1
25 25 H 1.09000 * 109.47203 * 107.05260 * 3 2 1
26 26 H 0.97003 * 120.00116 * 179.97438 * 8 7 5
27 27 H 1.09004 * 110.75533 * 321.69869 * 17 15 13
28 28 H 1.09002 * 110.75631 * 85.05780 * 17 15 13
29 29 H 1.09000 * 110.48819 * 156.62302 * 18 17 15
30 30 H 1.09000 * 110.48563 * 279.26032 * 18 17 15
31 31 H 1.08995 * 110.03400 * 217.10590 * 19 18 17
32 32 H 1.08997 * 110.06745 * 95.69513 * 19 18 17
33 33 H 1.00906 * 110.99852 * 297.16704 * 22 20 19
34 34 H 1.00899 * 111.00100 * 61.12099 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6459 0.0007 0.0000
4 7 3.1349 -1.3452 0.3095
5 6 3.2885 -1.7354 1.6148
6 1 3.7140 -2.7014 1.8432
7 6 2.8969 -0.8879 2.6439
8 7 1.9637 0.0132 2.4339
9 14 3.6967 -1.0295 4.3261
10 1 5.1572 -0.7913 4.2013
11 1 3.1064 -0.0201 5.2415
12 1 3.4621 -2.3901 4.8728
13 6 3.4338 -2.1998 -0.6888
14 8 3.8390 -3.3140 -0.4326
15 6 3.2644 -1.7711 -2.1237
16 1 3.9039 -0.9164 -2.3434
17 6 1.7824 -1.4286 -2.4158
18 6 1.6843 -1.6159 -3.9501
19 6 2.5724 -2.8438 -4.2389
20 6 3.5770 -2.9425 -3.0775
21 1 3.4540 -3.8918 -2.5562
22 7 4.9494 -2.8233 -3.5879
23 1 -1.0498 -0.0004 -0.0001
24 1 3.0090 0.7010 0.7522
25 1 3.0092 0.3022 -0.9825
26 1 1.6900 0.6046 3.1524
27 1 1.1169 -2.1200 -1.8988
28 1 1.5620 -0.3980 -2.1375
29 1 0.6536 -1.8126 -4.2453
30 1 2.0689 -0.7368 -4.4671
31 1 3.1030 -2.7075 -5.1812
32 1 1.9614 -3.7455 -4.2818
33 1 5.1695 -3.5832 -4.2143
34 1 5.0917 -1.9313 -4.0375
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300922373.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:34:14
Heat of formation + Delta-G solvation = 32.088588 kcal
Electronic energy + Delta-G solvation = -17356.689774 eV
Core-core repulsion = 14677.482938 eV
Total energy + Delta-G solvation = -2679.206836 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-39.43327 -37.03945 -35.11171 -32.50905 -31.77314 -31.19233 -28.87401 -26.32240
-26.06491 -24.46178 -20.99147 -20.15985 -18.59054 -17.84336 -16.62972 -16.38586
-15.40521 -14.96637 -14.68841 -14.16745 -14.09038 -13.58048 -13.12395 -12.73594
-12.32393 -12.14592 -11.82308 -11.67752 -11.33338 -11.04214 -10.78752 -10.58837
-10.49494 -10.34781 -10.25159 -10.16853 -9.25186 -9.17171 -8.72276 -8.33512
-8.22555 -7.88194 -6.29040 -3.72712 3.21258 3.28535 3.33372 3.75626
3.99563 4.14426 4.24209 4.76767 4.81949 4.87647 5.09503 5.24097
5.30061 5.56947 5.73555 5.79045 5.83108 5.89750 5.92990 5.97868
6.14858 6.19966 6.37932 6.49171 6.63326 6.76424 6.88518 7.11266
7.49795 7.61900 7.74611 8.09924 8.50381 8.90674 9.21299 9.45208
10.01230 10.69834
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031495 B = 0.008787 C = 0.007260
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 888.812637 B = 3185.830741 C = 3856.087549
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.273 4.273
2 C -0.095 4.095
3 C 0.229 3.771
4 N -0.443 5.443
5 C -0.313 4.313
6 H 0.106 0.894
7 C 0.031 3.969
8 N -0.862 5.862
9 Si 0.917 3.083
10 H -0.274 1.274
11 H -0.286 1.286
12 H -0.274 1.274
13 C 0.460 3.540
14 O -0.579 6.579
15 C -0.095 4.095
16 H 0.086 0.914
17 C -0.117 4.117
18 C -0.121 4.121
19 C -0.159 4.159
20 C 0.103 3.897
21 H 0.100 0.900
22 N -0.836 5.836
23 H 0.196 0.804
24 H 0.110 0.890
25 H 0.061 0.939
26 H 0.267 0.733
27 H 0.071 0.929
28 H 0.081 0.919
29 H 0.062 0.938
30 H 0.062 0.938
31 H 0.057 0.943
32 H 0.063 0.937
33 H 0.335 0.665
34 H 0.332 0.668
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.746 2.050 -10.761 10.980
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.292 4.292
2 C -0.097 4.097
3 C 0.106 3.894
4 N -0.161 5.161
5 C -0.441 4.441
6 H 0.124 0.876
7 C -0.173 4.173
8 N -0.500 5.500
9 Si 0.744 3.256
10 H -0.200 1.200
11 H -0.211 1.211
12 H -0.200 1.200
13 C 0.249 3.751
14 O -0.463 6.463
15 C -0.117 4.117
16 H 0.104 0.896
17 C -0.155 4.155
18 C -0.159 4.159
19 C -0.199 4.199
20 C -0.009 4.009
21 H 0.118 0.882
22 N -0.363 5.363
23 H 0.213 0.787
24 H 0.127 0.873
25 H 0.079 0.921
26 H 0.078 0.922
27 H 0.089 0.911
28 H 0.099 0.901
29 H 0.080 0.920
30 H 0.080 0.920
31 H 0.076 0.924
32 H 0.082 0.918
33 H 0.148 0.852
34 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -0.370 1.562 -9.709 9.841
hybrid contribution -0.576 0.224 0.040 0.619
sum -0.946 1.786 -9.668 9.877
Atomic orbital electron populations
1.24174 0.95284 1.02366 1.07377 1.22987 0.94143 0.98164 0.94364
1.18485 0.84460 0.87221 0.99255 1.43722 1.55991 1.10625 1.05798
1.19646 1.39891 1.04393 0.80122 0.87628 1.25187 0.95431 0.96862
0.99773 1.70128 1.24178 1.21963 1.33769 0.86140 0.79812 0.78073
0.81584 1.19964 1.21142 1.19980 1.19734 0.83946 0.85492 0.85975
1.90499 1.50880 1.20910 1.84022 1.21959 0.97087 0.98359 0.94322
0.89572 1.22745 0.95295 1.02735 0.94774 1.22325 0.99309 0.97497
0.96793 1.23086 0.99227 0.98887 0.98685 1.21979 0.85645 1.00341
0.92897 0.88222 1.58768 1.25591 1.06822 1.45158 0.78684 0.87261
0.92120 0.92181 0.91072 0.90085 0.91962 0.91957 0.92409 0.91846
0.85227 0.85579
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.27 -5.63 19.21 29.55 0.57 -5.06 16
2 C -0.09 -2.10 8.36 -37.12 -0.31 -2.41 16
3 C 0.23 5.10 4.75 -6.83 -0.03 5.07 16
4 N -0.44 -11.30 2.59 -117.93 -0.31 -11.60 16
5 C -0.31 -8.77 9.44 -14.93 -0.14 -8.91 16
6 H 0.11 3.15 7.29 -52.48 -0.38 2.76 16
7 C 0.03 0.81 4.96 -17.47 -0.09 0.73 16
8 N -0.86 -22.51 8.94 55.50 0.50 -22.01 16
9 Si 0.92 20.82 29.62 -169.99 -5.04 15.79 16
10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16
11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16
12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16
13 C 0.46 11.30 7.02 -10.98 -0.08 11.22 16
14 O -0.58 -16.30 15.03 5.55 0.08 -16.21 16
15 C -0.10 -1.78 2.00 -90.11 -0.18 -1.96 16
16 H 0.09 1.50 7.28 -51.93 -0.38 1.12 16
17 C -0.12 -1.98 4.58 -24.74 -0.11 -2.09 16
18 C -0.12 -1.60 6.83 -25.07 -0.17 -1.78 16
19 C -0.16 -2.10 6.57 -25.61 -0.17 -2.27 16
20 C 0.10 1.72 3.39 -66.59 -0.23 1.50 16
21 H 0.10 1.99 6.90 -51.93 -0.36 1.64 16
22 N -0.84 -12.30 9.14 -3.71 -0.03 -12.33 16
23 H 0.20 3.33 7.80 -54.10 -0.42 2.91 16
24 H 0.11 2.59 6.30 -51.93 -0.33 2.26 16
25 H 0.06 1.14 5.61 -51.93 -0.29 0.85 16
26 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16
27 H 0.07 1.36 8.05 -51.93 -0.42 0.94 16
28 H 0.08 1.36 4.97 -51.93 -0.26 1.10 16
29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16
31 H 0.06 0.65 7.92 -51.93 -0.41 0.24 16
32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
33 H 0.34 4.14 9.07 -39.29 -0.36 3.78 16
34 H 0.33 4.18 8.87 -39.29 -0.35 3.83 16
LS Contribution 276.53 15.07 4.17 4.17
Total: -1.00 -31.03 276.53 -5.92 -36.95
By element:
Atomic # 1 Polarization: 15.56 SS G_CDS: -4.35 Total: 11.21 kcal
Atomic # 6 Polarization: -5.02 SS G_CDS: -0.94 Total: -5.96 kcal
Atomic # 7 Polarization: -46.10 SS G_CDS: 0.16 Total: -45.95 kcal
Atomic # 8 Polarization: -16.30 SS G_CDS: 0.08 Total: -16.21 kcal
Atomic # 14 Polarization: 20.82 SS G_CDS: -5.04 Total: 15.79 kcal
Total LS contribution 4.17 Total: 4.17 kcal
Total: -31.03 -5.92 -36.95 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300922373.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.043 kcal
(2) G-P(sol) polarization free energy of solvation -31.034 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.010 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.955 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.089 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds