Wall clock time and date at job start Mon Mar 30 2020 03:34:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17397 * 1
3 3 C 1.47197 * 179.97438 * 2 1
4 4 N 1.46499 * 109.47159 * 347.04948 * 3 2 1
5 5 C 1.37097 * 120.00048 * 273.84562 * 4 3 2
6 6 H 1.08003 * 120.00025 * 184.29799 * 5 4 3
7 7 C 1.38951 * 119.99911 * 4.28801 * 5 4 3
8 8 N 1.31407 * 119.99868 * 25.51546 * 7 5 4
9 9 Si 1.86801 * 120.00010 * 205.50553 * 7 5 4
10 10 H 1.48500 * 109.46913 * 60.00398 * 9 7 5
11 11 H 1.48506 * 109.46976 * 180.02562 * 9 7 5
12 12 H 1.48496 * 109.47295 * 300.00694 * 9 7 5
13 13 C 1.34777 * 120.00289 * 93.84757 * 4 3 2
14 14 O 1.21291 * 120.00405 * 179.97438 * 13 4 3
15 15 C 1.50706 * 119.99700 * 359.97438 * 13 4 3
16 16 H 1.08994 * 110.43425 * 61.08719 * 15 13 4
17 17 C 1.54891 * 110.48773 * 298.54859 * 15 13 4
18 18 C 1.54883 * 102.75022 * 203.38121 * 17 15 13
19 19 C 1.54269 * 104.19813 * 37.94158 * 18 17 15
20 20 C 1.53882 * 106.59580 * 336.39373 * 19 18 17
21 21 H 1.08996 * 110.07099 * 119.30830 * 20 19 18
22 22 N 1.46902 * 110.02777 * 240.71594 * 20 19 18
23 23 H 4.40634 * 5.51443 * 180.02562 * 4 1 2
24 24 H 1.09000 * 109.47371 * 227.05168 * 3 2 1
25 25 H 1.09000 * 109.47203 * 107.05260 * 3 2 1
26 26 H 0.97003 * 120.00116 * 179.97438 * 8 7 5
27 27 H 1.09004 * 110.75533 * 321.69869 * 17 15 13
28 28 H 1.09002 * 110.75631 * 85.05780 * 17 15 13
29 29 H 1.09000 * 110.48819 * 156.62302 * 18 17 15
30 30 H 1.09000 * 110.48563 * 279.26032 * 18 17 15
31 31 H 1.08995 * 110.03400 * 217.10590 * 19 18 17
32 32 H 1.08997 * 110.06745 * 95.69513 * 19 18 17
33 33 H 1.00906 * 110.99852 * 297.16704 * 22 20 19
34 34 H 1.00899 * 111.00100 * 61.12099 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6459 0.0007 0.0000
4 7 3.1349 -1.3452 0.3095
5 6 3.2885 -1.7354 1.6148
6 1 3.7140 -2.7014 1.8432
7 6 2.8969 -0.8879 2.6439
8 7 1.9637 0.0132 2.4339
9 14 3.6967 -1.0295 4.3261
10 1 5.1572 -0.7913 4.2013
11 1 3.1064 -0.0201 5.2415
12 1 3.4621 -2.3901 4.8728
13 6 3.4338 -2.1998 -0.6888
14 8 3.8390 -3.3140 -0.4326
15 6 3.2644 -1.7711 -2.1237
16 1 3.9039 -0.9164 -2.3434
17 6 1.7824 -1.4286 -2.4158
18 6 1.6843 -1.6159 -3.9501
19 6 2.5724 -2.8438 -4.2389
20 6 3.5770 -2.9425 -3.0775
21 1 3.4540 -3.8918 -2.5562
22 7 4.9494 -2.8233 -3.5879
23 1 -1.0498 -0.0004 -0.0001
24 1 3.0090 0.7010 0.7522
25 1 3.0092 0.3022 -0.9825
26 1 1.6900 0.6046 3.1524
27 1 1.1169 -2.1200 -1.8988
28 1 1.5620 -0.3980 -2.1375
29 1 0.6536 -1.8126 -4.2453
30 1 2.0689 -0.7368 -4.4671
31 1 3.1030 -2.7075 -5.1812
32 1 1.9614 -3.7455 -4.2818
33 1 5.1695 -3.5832 -4.2143
34 1 5.0917 -1.9313 -4.0375
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000300922373.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:34:13
Heat of formation + Delta-G solvation = 10.396611 kcal
Electronic energy + Delta-G solvation = -17357.630409 eV
Core-core repulsion = 14677.482938 eV
Total energy + Delta-G solvation = -2680.147470 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-41.09487 -38.56410 -37.05514 -34.17879 -33.23419 -33.02968 -30.31237 -28.12541
-27.32889 -26.35335 -22.52953 -21.44193 -20.16062 -19.68737 -18.31494 -18.17838
-16.96869 -16.51016 -16.12693 -15.91463 -15.70453 -15.23053 -14.47782 -14.35660
-14.04095 -13.81222 -13.52103 -13.00780 -12.89080 -12.81352 -12.43758 -12.20025
-12.08018 -11.86213 -11.72219 -11.42670 -11.12667 -10.94438 -10.49442 -10.16781
-9.88266 -9.44588 -8.31214 -5.83193 1.36353 1.41496 1.51034 1.94935
2.19060 2.36698 2.46774 3.02815 3.22386 3.60289 3.63501 3.86564
3.96793 4.12065 4.32132 4.44136 4.48867 4.61508 4.69236 4.70492
4.80741 5.01903 5.06276 5.16246 5.21758 5.40000 5.41351 5.48474
5.49772 6.05717 6.37540 6.48960 6.76465 7.18519 7.23420 7.48665
8.06449 8.64603
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031495 B = 0.008787 C = 0.007260
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 888.812637 B = 3185.830741 C = 3856.087549
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.257 4.257
2 C -0.131 4.131
3 C 0.233 3.767
4 N -0.454 5.454
5 C -0.357 4.357
6 H 0.071 0.929
7 C 0.007 3.993
8 N -0.864 5.864
9 Si 0.977 3.023
10 H -0.272 1.272
11 H -0.269 1.269
12 H -0.281 1.281
13 C 0.445 3.555
14 O -0.630 6.630
15 C -0.089 4.089
16 H 0.104 0.896
17 C -0.112 4.112
18 C -0.110 4.110
19 C -0.148 4.148
20 C 0.106 3.894
21 H 0.057 0.943
22 N -0.847 5.847
23 H 0.228 0.772
24 H 0.091 0.909
25 H 0.094 0.906
26 H 0.272 0.728
27 H 0.039 0.961
28 H 0.083 0.917
29 H 0.078 0.922
30 H 0.088 0.912
31 H 0.088 0.912
32 H 0.063 0.937
33 H 0.349 0.651
34 H 0.348 0.652
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.455 3.564 -12.261 12.851
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.276 4.276
2 C -0.133 4.133
3 C 0.110 3.890
4 N -0.172 5.172
5 C -0.484 4.484
6 H 0.089 0.911
7 C -0.197 4.197
8 N -0.501 5.501
9 Si 0.802 3.198
10 H -0.198 1.198
11 H -0.194 1.194
12 H -0.206 1.206
13 C 0.236 3.764
14 O -0.517 6.517
15 C -0.111 4.111
16 H 0.122 0.878
17 C -0.150 4.150
18 C -0.148 4.148
19 C -0.188 4.188
20 C -0.006 4.006
21 H 0.075 0.925
22 N -0.379 5.379
23 H 0.245 0.755
24 H 0.109 0.891
25 H 0.112 0.888
26 H 0.083 0.917
27 H 0.058 0.942
28 H 0.101 0.899
29 H 0.097 0.903
30 H 0.107 0.893
31 H 0.107 0.893
32 H 0.082 0.918
33 H 0.164 0.836
34 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -1.097 3.117 -11.232 11.708
hybrid contribution -0.384 -0.258 0.549 0.718
sum -1.482 2.859 -10.683 11.158
Atomic orbital electron populations
1.24990 0.96199 1.00619 1.05766 1.23126 0.94579 0.99718 0.95858
1.18486 0.85022 0.85127 1.00316 1.43923 1.56028 1.11943 1.05280
1.19483 1.42366 1.04261 0.82283 0.91088 1.25819 0.95192 0.96218
1.02464 1.70212 1.23589 1.21572 1.34742 0.85256 0.78935 0.77914
0.77744 1.19751 1.19375 1.20646 1.20840 0.82534 0.84814 0.88239
1.90453 1.52854 1.23076 1.85306 1.21978 0.98974 0.99691 0.90465
0.87816 1.22650 0.92950 1.01812 0.97598 1.22315 1.00510 0.98407
0.93564 1.22979 0.98395 0.99166 0.98214 1.21763 0.87887 0.97295
0.93674 0.92518 1.58629 1.24615 1.08381 1.46235 0.75492 0.89095
0.88842 0.91726 0.94173 0.89894 0.90348 0.89341 0.89348 0.91778
0.83650 0.83824
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.26 -10.16 19.21 74.32 1.43 -8.73 16
2 C -0.13 -5.72 8.36 31.12 0.26 -5.46 16
3 C 0.23 10.39 4.75 84.57 0.40 10.79 16
4 N -0.45 -23.90 2.59 -645.41 -1.67 -25.58 16
5 C -0.36 -20.81 9.44 84.04 0.79 -20.02 16
6 H 0.07 4.53 7.29 -2.91 -0.02 4.51 16
7 C 0.01 0.35 4.96 84.93 0.42 0.77 16
8 N -0.86 -44.95 8.94 21.66 0.19 -44.76 16
9 Si 0.98 43.13 29.62 68.60 2.03 45.16 16
10 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16
11 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16
12 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16
13 C 0.45 22.70 7.02 87.66 0.62 23.32 16
14 O -0.63 -37.57 15.03 -3.06 -0.05 -37.61 16
15 C -0.09 -3.30 2.00 -10.46 -0.02 -3.32 16
16 H 0.10 3.44 7.28 -2.39 -0.02 3.42 16
17 C -0.11 -3.61 4.58 31.88 0.15 -3.47 16
18 C -0.11 -2.52 6.83 31.67 0.22 -2.30 16
19 C -0.15 -3.48 6.57 31.32 0.21 -3.28 16
20 C 0.11 3.48 3.39 45.64 0.15 3.63 16
21 H 0.06 2.36 6.90 -2.39 -0.02 2.34 16
22 N -0.85 -23.76 9.14 -165.67 -1.51 -25.27 16
23 H 0.23 7.08 7.80 -4.43 -0.03 7.04 16
24 H 0.09 4.34 6.30 -2.39 -0.02 4.33 16
25 H 0.09 3.43 5.61 -2.39 -0.01 3.42 16
26 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16
27 H 0.04 1.53 8.05 -2.38 -0.02 1.51 16
28 H 0.08 2.63 4.97 -2.39 -0.01 2.62 16
29 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16
30 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16
31 H 0.09 1.59 7.92 -2.39 -0.02 1.57 16
32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
33 H 0.35 8.06 9.07 -89.69 -0.81 7.25 16
34 H 0.35 7.82 8.87 -89.69 -0.80 7.02 16
Total: -1.00 -70.41 276.53 3.13 -67.28
By element:
Atomic # 1 Polarization: 29.32 SS G_CDS: -0.48 Total: 28.84 kcal
Atomic # 6 Polarization: -12.68 SS G_CDS: 4.62 Total: -8.06 kcal
Atomic # 7 Polarization: -92.61 SS G_CDS: -2.99 Total: -95.60 kcal
Atomic # 8 Polarization: -37.57 SS G_CDS: -0.05 Total: -37.61 kcal
Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal
Total: -70.41 3.13 -67.28 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300922373.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.679 kcal
(2) G-P(sol) polarization free energy of solvation -70.411 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.268 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.283 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.397 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds