Wall clock time and date at job start Mon Mar 30 2020 03:34:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17398 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 N 1.46497 * 109.47093 * 114.72501 * 3 2 1
5 5 C 1.37094 * 119.99813 * 266.49879 * 4 3 2
6 6 H 1.07999 * 120.00037 * 318.62364 * 5 4 3
7 7 C 1.38955 * 120.00340 * 138.62810 * 5 4 3
8 8 N 1.31407 * 120.00401 * 159.37163 * 7 5 4
9 9 Si 1.86801 * 119.99332 * 339.37501 * 7 5 4
10 10 H 1.48505 * 109.46924 * 95.49544 * 9 7 5
11 11 H 1.48501 * 109.46754 * 215.48872 * 9 7 5
12 12 H 1.48494 * 109.47313 * 335.49310 * 9 7 5
13 13 C 1.34773 * 119.99957 * 86.22356 * 4 3 2
14 14 O 1.21291 * 119.99764 * 180.02562 * 13 4 3
15 15 C 1.50704 * 120.00296 * 0.02562 * 13 4 3
16 16 H 1.09004 * 110.01214 * 332.51837 * 15 13 4
17 17 C 1.54269 * 110.03136 * 211.12749 * 15 13 4
18 18 C 1.54965 * 104.15772 * 217.13522 * 17 15 13
19 19 C 1.54888 * 102.77623 * 37.88764 * 18 17 15
20 20 C 1.53868 * 110.03145 * 93.90758 * 15 13 4
21 21 H 1.09001 * 110.03604 * 238.56797 * 20 15 13
22 22 N 1.46900 * 110.03697 * 0.02562 * 20 15 13
23 23 H 4.40637 * 5.51353 * 180.02562 * 4 1 2
24 24 H 1.08995 * 109.47379 * 354.72274 * 3 2 1
25 25 H 1.08998 * 109.46941 * 234.72506 * 3 2 1
26 26 H 0.96995 * 119.99917 * 179.97438 * 8 7 5
27 27 H 1.08994 * 110.48751 * 335.78131 * 17 15 13
28 28 H 1.09002 * 110.48392 * 98.42408 * 17 15 13
29 29 H 1.09005 * 110.71780 * 279.57867 * 18 17 15
30 30 H 1.08995 * 110.92497 * 156.29700 * 18 17 15
31 31 H 1.09005 * 110.48701 * 203.40531 * 19 18 17
32 32 H 1.08994 * 110.59816 * 80.81988 * 19 18 17
33 33 H 1.00893 * 111.00109 * 172.59418 * 22 20 15
34 34 H 1.00896 * 110.99737 * 296.55143 * 22 20 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1340 0.5786 -1.2546
5 6 3.4312 -0.2375 -2.3153
6 1 3.9480 -1.1714 -2.1499
7 6 3.0678 0.1367 -3.6032
8 7 3.6752 -0.3973 -4.6388
9 14 1.7155 1.3992 -3.8622
10 1 2.3206 2.7444 -4.0343
11 1 0.9364 1.0479 -5.0766
12 1 0.8147 1.4089 -2.6817
13 6 3.2856 1.9130 -1.3678
14 8 3.6892 2.3915 -2.4067
15 6 2.9535 2.8106 -0.2037
16 1 2.1930 2.3437 0.4223
17 6 2.4511 4.1762 -0.7159
18 6 3.0401 5.1981 0.2892
19 6 4.4439 4.6153 0.5872
20 6 4.2198 3.0894 0.6248
21 1 4.0736 2.7588 1.6531
22 7 5.3719 2.3974 0.0317
23 1 -1.0501 0.0001 0.0003
24 1 3.0098 -1.0224 0.0945
25 1 3.0090 0.5943 0.8390
26 1 3.4212 -0.1363 -5.5378
27 1 2.8276 4.3689 -1.7204
28 1 1.3617 4.2113 -0.7026
29 1 2.4376 5.2376 1.1967
30 1 3.1203 6.1867 -0.1628
31 1 4.8080 4.9713 1.5510
32 1 5.1445 4.8786 -0.2051
33 1 6.2298 2.6652 0.4901
34 1 5.2451 1.3968 0.0576
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000300922378.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:34:17
Heat of formation + Delta-G solvation = 34.539788 kcal
Electronic energy + Delta-G solvation = -17720.774763 eV
Core-core repulsion = 15041.674220 eV
Total energy + Delta-G solvation = -2679.100543 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.68409 -37.00250 -34.93616 -32.55577 -32.35625 -31.43151 -28.96056 -26.71576
-26.20474 -24.18744 -20.90470 -20.45014 -18.76947 -17.66458 -17.24230 -16.08343
-15.47857 -15.28865 -14.79002 -14.59075 -13.91327 -13.72099 -13.22520 -12.83335
-12.63207 -12.52045 -12.05896 -11.40162 -11.25867 -10.85867 -10.81178 -10.78662
-10.68204 -10.28260 -10.20934 -9.92086 -9.72544 -9.65781 -8.45938 -8.42136
-8.17259 -7.60572 -6.10562 -3.85404 3.19607 3.32692 3.43392 3.57553
3.72233 3.95801 4.56838 4.64868 4.79434 4.82105 4.90313 5.00465
5.30028 5.37667 5.54114 5.66223 5.73405 5.78573 5.85883 5.91487
6.04395 6.10761 6.12035 6.24027 6.33755 6.42821 6.45832 6.74964
7.55327 7.83547 7.94041 8.02655 8.13220 8.85864 9.05104 9.52101
9.94048 10.95055
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.022770 B = 0.011892 C = 0.010733
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1229.380373 B = 2353.933925 C = 2608.167598
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.179 4.179
3 C 0.205 3.795
4 N -0.470 5.470
5 C -0.347 4.347
6 H 0.093 0.907
7 C 0.095 3.905
8 N -0.867 5.867
9 Si 0.904 3.096
10 H -0.256 1.256
11 H -0.312 1.312
12 H -0.278 1.278
13 C 0.489 3.511
14 O -0.520 6.520
15 C -0.113 4.113
16 H 0.078 0.922
17 C -0.113 4.113
18 C -0.119 4.119
19 C -0.117 4.117
20 C 0.105 3.895
21 H 0.034 0.966
22 N -0.832 5.832
23 H 0.210 0.790
24 H 0.097 0.903
25 H 0.077 0.923
26 H 0.270 0.730
27 H 0.087 0.913
28 H 0.059 0.941
29 H 0.062 0.938
30 H 0.066 0.934
31 H 0.059 0.941
32 H 0.080 0.920
33 H 0.334 0.666
34 H 0.347 0.653
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.288 6.457 13.372 15.024
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.245 4.245
2 C -0.180 4.180
3 C 0.082 3.918
4 N -0.193 5.193
5 C -0.473 4.473
6 H 0.111 0.889
7 C -0.114 4.114
8 N -0.502 5.502
9 Si 0.735 3.265
10 H -0.182 1.182
11 H -0.242 1.242
12 H -0.203 1.203
13 C 0.278 3.722
14 O -0.399 6.399
15 C -0.136 4.136
16 H 0.096 0.904
17 C -0.151 4.151
18 C -0.157 4.157
19 C -0.155 4.155
20 C -0.007 4.007
21 H 0.052 0.948
22 N -0.364 5.364
23 H 0.227 0.773
24 H 0.115 0.885
25 H 0.094 0.906
26 H 0.080 0.920
27 H 0.106 0.894
28 H 0.078 0.922
29 H 0.081 0.919
30 H 0.085 0.915
31 H 0.077 0.923
32 H 0.099 0.901
33 H 0.146 0.854
34 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -2.182 7.037 11.962 14.048
hybrid contribution -0.975 -0.074 0.797 1.262
sum -3.157 6.963 12.759 14.874
Atomic orbital electron populations
1.24739 0.95799 1.02332 1.01628 1.24146 0.95410 0.99164 0.99311
1.18708 0.83015 1.00582 0.89544 1.43698 1.58643 1.05015 1.11970
1.18740 1.39026 1.05528 0.84010 0.88902 1.25239 0.95514 0.95589
0.95040 1.69751 1.38231 1.43393 0.98851 0.86466 0.79992 0.83671
0.76342 1.18155 1.24176 1.20312 1.19748 0.80877 0.82725 0.88865
1.90485 1.46351 1.73455 1.29608 1.22075 0.97205 0.97165 0.97115
0.90374 1.22347 0.99445 0.92464 1.00828 1.22421 0.95965 0.98496
0.98825 1.22433 0.97931 0.93838 1.01318 1.21790 0.90496 0.94588
0.93842 0.94821 1.58697 1.03405 1.12441 1.61879 0.77336 0.88522
0.90551 0.92014 0.89418 0.92219 0.91948 0.91518 0.92266 0.90115
0.85364 0.83781
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.23 -3.94 19.25 29.55 0.57 -3.37 16
2 C -0.18 -3.42 12.86 -37.12 -0.48 -3.90 16
3 C 0.20 3.84 5.50 -6.83 -0.04 3.80 16
4 N -0.47 -11.21 1.92 -117.94 -0.23 -11.44 16
5 C -0.35 -9.86 9.69 -14.93 -0.14 -10.01 16
6 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16
7 C 0.09 2.88 4.82 -17.47 -0.08 2.79 16
8 N -0.87 -27.21 13.96 55.50 0.77 -26.44 16
9 Si 0.90 25.24 24.79 -169.99 -4.21 21.03 16
10 H -0.26 -7.42 6.30 56.52 0.36 -7.06 16
11 H -0.31 -8.60 7.11 56.52 0.40 -8.19 16
12 H -0.28 -7.57 7.11 56.52 0.40 -7.16 16
13 C 0.49 11.61 3.11 -10.99 -0.03 11.58 16
14 O -0.52 -14.64 11.12 5.55 0.06 -14.57 16
15 C -0.11 -2.10 2.42 -90.65 -0.22 -2.32 16
16 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16
17 C -0.11 -1.99 6.32 -25.03 -0.16 -2.15 16
18 C -0.12 -1.60 6.91 -24.70 -0.17 -1.77 16
19 C -0.12 -1.60 6.48 -25.07 -0.16 -1.76 16
20 C 0.10 1.61 3.79 -66.60 -0.25 1.36 16
21 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16
22 N -0.83 -13.88 8.05 -3.72 -0.03 -13.91 16
23 H 0.21 2.79 7.80 -54.09 -0.42 2.36 16
24 H 0.10 1.68 8.01 -51.93 -0.42 1.26 16
25 H 0.08 1.18 6.52 -51.93 -0.34 0.84 16
26 H 0.27 8.04 8.31 -40.82 -0.34 7.70 16
27 H 0.09 1.82 6.89 -51.93 -0.36 1.46 16
28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
32 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16
33 H 0.33 4.51 9.00 -39.30 -0.35 4.16 16
34 H 0.35 6.04 8.12 -39.29 -0.32 5.72 16
LS Contribution 278.94 15.07 4.20 4.20
Total: -1.00 -34.88 278.94 -5.25 -40.13
By element:
Atomic # 1 Polarization: 11.40 SS G_CDS: -4.65 Total: 6.75 kcal
Atomic # 6 Polarization: -4.58 SS G_CDS: -1.17 Total: -5.75 kcal
Atomic # 7 Polarization: -52.31 SS G_CDS: 0.52 Total: -51.79 kcal
Atomic # 8 Polarization: -14.64 SS G_CDS: 0.06 Total: -14.57 kcal
Atomic # 14 Polarization: 25.24 SS G_CDS: -4.21 Total: 21.03 kcal
Total LS contribution 4.20 Total: 4.20 kcal
Total: -34.88 -5.25 -40.13 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300922378.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.672 kcal
(2) G-P(sol) polarization free energy of solvation -34.877 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.794 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.255 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.540 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds