Wall clock time and date at job start Mon Mar 30 2020 03:34:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17398 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 N 1.46497 * 109.47093 * 114.72501 * 3 2 1
5 5 C 1.37094 * 119.99813 * 266.49879 * 4 3 2
6 6 H 1.07999 * 120.00037 * 318.62364 * 5 4 3
7 7 C 1.38955 * 120.00340 * 138.62810 * 5 4 3
8 8 N 1.31407 * 120.00401 * 159.37163 * 7 5 4
9 9 Si 1.86801 * 119.99332 * 339.37501 * 7 5 4
10 10 H 1.48505 * 109.46924 * 95.49544 * 9 7 5
11 11 H 1.48501 * 109.46754 * 215.48872 * 9 7 5
12 12 H 1.48494 * 109.47313 * 335.49310 * 9 7 5
13 13 C 1.34773 * 119.99957 * 86.22356 * 4 3 2
14 14 O 1.21291 * 119.99764 * 180.02562 * 13 4 3
15 15 C 1.50704 * 120.00296 * 0.02562 * 13 4 3
16 16 H 1.09004 * 110.01214 * 332.51837 * 15 13 4
17 17 C 1.54269 * 110.03136 * 211.12749 * 15 13 4
18 18 C 1.54965 * 104.15772 * 217.13522 * 17 15 13
19 19 C 1.54888 * 102.77623 * 37.88764 * 18 17 15
20 20 C 1.53868 * 110.03145 * 93.90758 * 15 13 4
21 21 H 1.09001 * 110.03604 * 238.56797 * 20 15 13
22 22 N 1.46900 * 110.03697 * 0.02562 * 20 15 13
23 23 H 4.40637 * 5.51353 * 180.02562 * 4 1 2
24 24 H 1.08995 * 109.47379 * 354.72274 * 3 2 1
25 25 H 1.08998 * 109.46941 * 234.72506 * 3 2 1
26 26 H 0.96995 * 119.99917 * 179.97438 * 8 7 5
27 27 H 1.08994 * 110.48751 * 335.78131 * 17 15 13
28 28 H 1.09002 * 110.48392 * 98.42408 * 17 15 13
29 29 H 1.09005 * 110.71780 * 279.57867 * 18 17 15
30 30 H 1.08995 * 110.92497 * 156.29700 * 18 17 15
31 31 H 1.09005 * 110.48701 * 203.40531 * 19 18 17
32 32 H 1.08994 * 110.59816 * 80.81988 * 19 18 17
33 33 H 1.00893 * 111.00109 * 172.59418 * 22 20 15
34 34 H 1.00896 * 110.99737 * 296.55143 * 22 20 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1340 0.5786 -1.2546
5 6 3.4312 -0.2375 -2.3153
6 1 3.9480 -1.1714 -2.1499
7 6 3.0678 0.1367 -3.6032
8 7 3.6752 -0.3973 -4.6388
9 14 1.7155 1.3992 -3.8622
10 1 2.3206 2.7444 -4.0343
11 1 0.9364 1.0479 -5.0766
12 1 0.8147 1.4089 -2.6817
13 6 3.2856 1.9130 -1.3678
14 8 3.6892 2.3915 -2.4067
15 6 2.9535 2.8106 -0.2037
16 1 2.1930 2.3437 0.4223
17 6 2.4511 4.1762 -0.7159
18 6 3.0401 5.1981 0.2892
19 6 4.4439 4.6153 0.5872
20 6 4.2198 3.0894 0.6248
21 1 4.0736 2.7588 1.6531
22 7 5.3719 2.3974 0.0317
23 1 -1.0501 0.0001 0.0003
24 1 3.0098 -1.0224 0.0945
25 1 3.0090 0.5943 0.8390
26 1 3.4212 -0.1363 -5.5378
27 1 2.8276 4.3689 -1.7204
28 1 1.3617 4.2113 -0.7026
29 1 2.4376 5.2376 1.1967
30 1 3.1203 6.1867 -0.1628
31 1 4.8080 4.9713 1.5510
32 1 5.1445 4.8786 -0.2051
33 1 6.2298 2.6652 0.4901
34 1 5.2451 1.3968 0.0576
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000300922378.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:34:17
Heat of formation + Delta-G solvation = 8.623906 kcal
Electronic energy + Delta-G solvation = -17721.898560 eV
Core-core repulsion = 15041.674220 eV
Total energy + Delta-G solvation = -2680.224340 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.33968 -38.46887 -36.75109 -34.52687 -33.64457 -33.16478 -30.38886 -28.37124
-27.48258 -26.06166 -22.59509 -21.63704 -20.41392 -19.31009 -18.86179 -17.66010
-17.15621 -16.88905 -16.32564 -16.07730 -15.51067 -15.15157 -14.83660 -14.59331
-14.46546 -14.30092 -13.80866 -12.99242 -12.79174 -12.71401 -12.24565 -12.11319
-12.00793 -11.94390 -11.79106 -11.52840 -11.32773 -11.07534 -10.72253 -10.28605
-9.68480 -9.41842 -8.40225 -6.11185 1.19327 1.31202 1.46012 1.76368
1.93593 2.09938 2.45724 2.82673 3.16998 3.55245 3.57503 3.65951
3.77789 4.05035 4.26960 4.42296 4.44945 4.48684 4.57776 4.66382
4.69960 4.83706 5.01266 5.10783 5.12721 5.17043 5.23341 5.49619
5.73692 5.87071 6.35660 6.67546 6.72874 6.83219 6.99977 7.38407
7.99744 8.68923
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.022770 B = 0.011892 C = 0.010733
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1229.380373 B = 2353.933925 C = 2608.167598
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.227 4.227
3 C 0.206 3.794
4 N -0.482 5.482
5 C -0.335 4.335
6 H 0.074 0.926
7 C 0.046 3.954
8 N -0.911 5.911
9 Si 0.954 3.046
10 H -0.281 1.281
11 H -0.312 1.312
12 H -0.266 1.266
13 C 0.488 3.512
14 O -0.572 6.572
15 C -0.112 4.112
16 H 0.097 0.903
17 C -0.121 4.121
18 C -0.107 4.107
19 C -0.114 4.114
20 C 0.105 3.895
21 H 0.072 0.928
22 N -0.857 5.857
23 H 0.246 0.754
24 H 0.104 0.896
25 H 0.114 0.886
26 H 0.269 0.731
27 H 0.045 0.955
28 H 0.067 0.933
29 H 0.094 0.906
30 H 0.076 0.924
31 H 0.096 0.904
32 H 0.056 0.944
33 H 0.350 0.650
34 H 0.340 0.660
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.658 7.649 16.770 18.792
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C -0.228 4.228
3 C 0.084 3.916
4 N -0.205 5.205
5 C -0.462 4.462
6 H 0.092 0.908
7 C -0.158 4.158
8 N -0.550 5.550
9 Si 0.786 3.214
10 H -0.208 1.208
11 H -0.242 1.242
12 H -0.190 1.190
13 C 0.280 3.720
14 O -0.454 6.454
15 C -0.134 4.134
16 H 0.115 0.885
17 C -0.159 4.159
18 C -0.145 4.145
19 C -0.152 4.152
20 C -0.006 4.006
21 H 0.089 0.911
22 N -0.391 5.391
23 H 0.262 0.738
24 H 0.122 0.878
25 H 0.132 0.868
26 H 0.078 0.922
27 H 0.064 0.936
28 H 0.086 0.914
29 H 0.112 0.888
30 H 0.095 0.905
31 H 0.115 0.885
32 H 0.075 0.925
33 H 0.165 0.835
34 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -3.569 8.221 15.415 17.831
hybrid contribution -0.528 -0.460 -0.154 0.717
sum -4.097 7.761 15.261 17.605
Atomic orbital electron populations
1.25673 0.96792 1.00263 0.99183 1.24287 0.96005 1.01135 1.01414
1.18817 0.83533 1.01487 0.87786 1.43806 1.59295 1.04968 1.12448
1.18732 1.37456 1.04825 0.85234 0.90841 1.25823 0.97315 0.97153
0.95488 1.69834 1.40260 1.45729 0.99159 0.85660 0.78453 0.80854
0.76474 1.20846 1.24156 1.19025 1.20708 0.78804 0.82956 0.89567
1.90455 1.48379 1.74484 1.32108 1.22207 0.99598 0.96235 0.95366
0.88507 1.22391 1.00071 0.93568 0.99917 1.22418 0.95748 0.97540
0.98754 1.22444 0.97682 0.92584 1.02475 1.21944 0.88345 0.95690
0.94661 0.91050 1.58659 1.04978 1.12117 1.63304 0.73785 0.87755
0.86839 0.92203 0.93639 0.91421 0.88763 0.90515 0.88550 0.92508
0.83506 0.84591
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -6.22 19.25 74.32 1.43 -4.79 16
2 C -0.23 -8.03 12.86 31.13 0.40 -7.63 16
3 C 0.21 7.26 5.50 84.57 0.46 7.73 16
4 N -0.48 -22.71 1.92 -645.43 -1.24 -23.95 16
5 C -0.34 -19.39 9.69 84.04 0.81 -18.57 16
6 H 0.07 4.43 8.06 -2.91 -0.02 4.41 16
7 C 0.05 2.85 4.82 84.93 0.41 3.26 16
8 N -0.91 -59.35 13.96 21.66 0.30 -59.05 16
9 Si 0.95 53.65 24.79 68.60 1.70 55.35 16
10 H -0.28 -16.82 6.30 99.48 0.63 -16.20 16
11 H -0.31 -17.13 7.11 99.48 0.71 -16.42 16
12 H -0.27 -14.08 7.11 99.48 0.71 -13.37 16
13 C 0.49 22.94 3.11 87.66 0.27 23.21 16
14 O -0.57 -32.92 11.12 -3.06 -0.03 -32.96 16
15 C -0.11 -3.86 2.42 -10.82 -0.03 -3.89 16
16 H 0.10 2.97 5.97 -2.38 -0.01 2.96 16
17 C -0.12 -4.04 6.32 31.70 0.20 -3.84 16
18 C -0.11 -2.46 6.91 31.91 0.22 -2.24 16
19 C -0.11 -2.69 6.48 31.67 0.21 -2.48 16
20 C 0.11 2.86 3.79 45.64 0.17 3.03 16
21 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16
22 N -0.86 -27.17 8.05 -165.68 -1.33 -28.51 16
23 H 0.25 5.31 7.80 -4.41 -0.03 5.27 16
24 H 0.10 3.46 8.01 -2.39 -0.02 3.44 16
25 H 0.11 3.09 6.52 -2.39 -0.02 3.07 16
26 H 0.27 16.69 8.31 -92.71 -0.77 15.92 16
27 H 0.04 1.91 6.89 -2.39 -0.02 1.89 16
28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
29 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16
30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16
31 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16
32 H 0.06 1.62 8.05 -2.39 -0.02 1.60 16
33 H 0.35 8.80 9.00 -89.70 -0.81 7.99 16
34 H 0.34 11.40 8.12 -89.70 -0.73 10.67 16
Total: -1.00 -79.25 278.94 3.45 -75.79
By element:
Atomic # 1 Polarization: 20.05 SS G_CDS: -0.51 Total: 19.54 kcal
Atomic # 6 Polarization: -10.78 SS G_CDS: 4.57 Total: -6.21 kcal
Atomic # 7 Polarization: -109.24 SS G_CDS: -2.27 Total: -111.51 kcal
Atomic # 8 Polarization: -32.92 SS G_CDS: -0.03 Total: -32.96 kcal
Atomic # 14 Polarization: 53.65 SS G_CDS: 1.70 Total: 55.35 kcal
Total: -79.25 3.45 -75.79 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000300922378.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.415 kcal
(2) G-P(sol) polarization free energy of solvation -79.246 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.169 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.455 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.791 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.624 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds