Wall clock time and date at job start Mon Mar 30 2020 03:41:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08995 * 109.47318 * 2 1
4 4 C 1.52999 * 109.46732 * 240.00460 * 2 1 3
5 5 C 1.53001 * 109.47141 * 174.99756 * 4 2 1
6 6 O 1.42895 * 109.47489 * 179.97438 * 5 4 2
7 7 N 1.46497 * 109.47137 * 120.00648 * 2 1 3
8 8 C 1.39248 * 119.99837 * 274.99463 * 7 2 1
9 9 C 1.39713 * 120.78483 * 0.02562 * 8 7 2
10 10 C 1.38447 * 119.47223 * 179.97438 * 9 8 7
11 11 N 1.31528 * 121.10732 * 359.97438 * 10 9 8
12 12 C 1.33689 * 121.70113 * 0.02562 * 11 10 9
13 13 C 1.41458 * 119.79514 * 180.02562 * 12 11 10
14 14 H 1.08000 * 120.00032 * 188.92620 * 13 12 11
15 15 C 1.40014 * 120.00185 * 8.92808 * 13 12 11
16 16 N 1.30747 * 119.99685 * 195.79751 * 15 13 12
17 17 Si 1.86793 * 119.99804 * 15.79222 * 15 13 12
18 18 H 1.48497 * 109.47692 * 270.00258 * 17 15 13
19 19 H 1.48504 * 109.47275 * 30.00551 * 17 15 13
20 20 H 1.48508 * 109.47041 * 150.00174 * 17 15 13
21 21 C 1.39023 * 120.78355 * 180.25435 * 8 7 2
22 22 H 1.08998 * 109.47806 * 59.99563 * 1 2 3
23 23 H 1.09003 * 109.46985 * 180.02562 * 1 2 3
24 24 H 1.09012 * 109.47098 * 299.99336 * 1 2 3
25 25 H 1.09007 * 109.47245 * 294.99786 * 4 2 1
26 26 H 1.09001 * 109.47305 * 54.99968 * 4 2 1
27 27 H 1.08999 * 109.47378 * 300.00135 * 5 4 2
28 28 H 1.09001 * 109.46848 * 59.99932 * 5 4 2
29 29 H 0.96698 * 114.00361 * 180.02562 * 6 5 4
30 30 H 0.96999 * 120.00320 * 95.00344 * 7 2 1
31 31 H 1.08001 * 120.26011 * 0.02562 * 9 8 7
32 32 H 1.08003 * 119.44319 * 179.97438 * 10 9 8
33 33 H 0.96993 * 120.00550 * 354.79505 * 16 15 13
34 34 H 1.07997 * 120.56458 * 0.02562 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0399 -0.7212 -1.2493
5 6 3.5647 -0.6132 -1.3139
6 8 4.0411 -1.2872 -2.4804
7 7 2.0183 -0.6907 1.1961
8 6 2.1514 0.0039 2.3956
9 6 1.8235 1.3595 2.4771
10 6 1.9657 2.0234 3.6836
11 7 2.4041 1.3992 4.7552
12 6 2.7309 0.1031 4.7287
13 6 3.1977 -0.5282 5.9054
14 1 3.5980 -1.5302 5.8582
15 6 3.1409 0.1459 7.1313
16 7 3.8367 -0.2889 8.1493
17 14 2.0710 1.6664 7.3123
18 1 2.8641 2.8737 6.9679
19 1 0.9050 1.5629 6.3985
20 1 1.5932 1.7714 8.7144
21 6 2.6182 -0.6341 3.5392
22 1 -0.3634 0.5139 -0.8899
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3634 0.5138 0.8901
25 1 1.7515 -1.7715 -1.2057
26 1 1.6052 -0.2616 -2.1370
27 1 3.8531 0.4370 -1.3575
28 1 3.9994 -1.0728 -0.4262
29 1 5.0019 -1.2596 -2.5858
30 1 2.2491 -1.6319 1.1524
31 1 1.4611 1.8851 1.6059
32 1 1.7125 3.0715 3.7460
33 1 4.3325 -1.1196 8.0786
34 1 2.8855 -1.6802 3.5141
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308830433.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:18
Heat of formation + Delta-G solvation = -45.484689 kcal
Electronic energy + Delta-G solvation = -16363.876699 eV
Core-core repulsion = 13681.306034 eV
Total energy + Delta-G solvation = -2682.570665 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-38.94066 -37.59592 -36.16699 -33.67492 -32.38052 -30.28237 -29.05157 -28.17527
-25.41663 -23.30355 -21.98929 -21.42476 -19.91591 -18.38529 -17.49180 -16.46006
-15.74177 -15.15451 -14.66856 -14.41384 -14.27721 -13.83266 -13.27790 -13.01600
-12.70902 -12.49275 -12.11574 -12.02307 -12.00172 -11.70561 -11.20519 -10.93951
-10.73153 -10.47145 -10.17048 -10.09092 -9.66147 -9.55885 -9.06539 -7.91461
-7.72687 -7.19039 -6.93791 -4.70502 2.66760 2.92176 3.62663 3.72230
3.88966 4.00145 4.02905 4.47801 4.68837 4.89506 4.94140 5.12032
5.36777 5.44551 5.53400 5.67903 5.71599 5.77547 5.86104 5.89514
6.06150 6.22525 6.32000 6.45013 6.69254 6.88587 7.22627 7.35321
7.40013 7.44298 7.52664 8.09512 8.15769 8.28041 8.51564 8.76389
9.67825 10.06474
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.039266 B = 0.005819 C = 0.005392
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 712.917709 B = 4810.764414 C = 5192.100981
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.156 3.844
3 H 0.079 0.921
4 C -0.124 4.124
5 C 0.075 3.925
6 O -0.580 6.580
7 N -0.748 5.748
8 C 0.268 3.732
9 C -0.368 4.368
10 C 0.172 3.828
11 N -0.592 5.592
12 C 0.278 3.722
13 C -0.483 4.483
14 H 0.078 0.922
15 C 0.050 3.950
16 N -0.807 5.807
17 Si 1.147 2.853
18 H -0.286 1.286
19 H -0.280 1.280
20 H -0.330 1.330
21 C -0.338 4.338
22 H 0.057 0.943
23 H 0.054 0.946
24 H 0.065 0.935
25 H 0.071 0.929
26 H 0.079 0.921
27 H 0.046 0.954
28 H 0.051 0.949
29 H 0.379 0.621
30 H 0.391 0.609
31 H 0.101 0.899
32 H 0.125 0.875
33 H 0.282 0.718
34 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.599 0.498 -15.109 15.339
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.050 3.950
3 H 0.097 0.903
4 C -0.162 4.162
5 C -0.003 4.003
6 O -0.385 6.385
7 N -0.380 5.380
8 C 0.162 3.838
9 C -0.395 4.395
10 C 0.009 3.991
11 N -0.312 5.312
12 C 0.156 3.844
13 C -0.514 4.514
14 H 0.096 0.904
15 C -0.171 4.171
16 N -0.429 5.429
17 Si 0.980 3.020
18 H -0.213 1.213
19 H -0.207 1.207
20 H -0.263 1.263
21 C -0.364 4.364
22 H 0.076 0.924
23 H 0.073 0.927
24 H 0.084 0.916
25 H 0.090 0.910
26 H 0.097 0.903
27 H 0.064 0.936
28 H 0.070 0.930
29 H 0.225 0.775
30 H 0.225 0.775
31 H 0.119 0.881
32 H 0.142 0.858
33 H 0.093 0.907
34 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -3.518 1.993 -13.433 14.029
hybrid contribution 1.212 -2.176 -1.899 3.132
sum -2.306 -0.183 -15.333 15.506
Atomic orbital electron populations
1.22264 0.95974 1.02089 1.02123 1.20676 0.93551 0.96920 0.83877
0.90271 1.21795 0.94262 1.02041 0.98148 1.22201 0.95031 0.95774
0.87253 1.86427 1.27186 1.78933 1.45974 1.44550 1.74511 1.11738
1.07181 1.17703 0.90293 0.91049 0.84718 1.20732 1.24898 0.94278
0.99619 1.21894 0.91192 0.97739 0.88243 1.66753 1.24308 1.10772
1.29353 1.18286 0.86691 0.87167 0.92303 1.20673 1.35817 1.02404
0.92545 0.90404 1.27718 0.94264 1.04018 0.91143 1.70630 1.18851
1.19356 1.34074 0.82067 0.76403 0.72902 0.70623 1.21288 1.20742
1.26335 1.20997 1.21864 0.99876 0.93702 0.92426 0.92717 0.91562
0.91023 0.90264 0.93610 0.93037 0.77470 0.77544 0.88062 0.85794
0.90666 0.88392
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.01 9.47 37.16 0.35 -1.65 16
2 C 0.16 2.00 2.28 -67.93 -0.16 1.85 16
3 H 0.08 1.07 6.54 -51.93 -0.34 0.73 16
4 C -0.12 -1.38 5.12 -26.73 -0.14 -1.52 16
5 C 0.07 0.85 6.93 37.16 0.26 1.11 16
6 O -0.58 -6.40 13.66 -35.23 -0.48 -6.88 16
7 N -0.75 -11.85 4.69 -52.04 -0.24 -12.10 16
8 C 0.27 5.50 6.67 -83.65 -0.56 4.94 16
9 C -0.37 -7.46 8.97 -38.95 -0.35 -7.81 16
10 C 0.17 3.82 11.17 -17.60 -0.20 3.63 16
11 N -0.59 -15.26 5.03 -11.21 -0.06 -15.32 16
12 C 0.28 7.41 6.27 -85.02 -0.53 6.88 16
13 C -0.48 -13.52 9.51 -37.69 -0.36 -13.87 16
14 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16
15 C 0.05 1.39 5.51 -17.35 -0.10 1.29 16
16 N -0.81 -22.45 13.65 55.55 0.76 -21.69 16
17 Si 1.15 28.59 25.93 -169.99 -4.41 24.18 16
18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
19 H -0.28 -7.03 6.54 56.52 0.37 -6.66 16
20 H -0.33 -8.05 7.11 56.52 0.40 -7.64 16
21 C -0.34 -8.03 9.72 -38.48 -0.37 -8.40 16
22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16
24 H 0.07 0.93 7.81 -51.92 -0.41 0.52 16
25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16
26 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16
27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
28 H 0.05 0.63 7.75 -51.93 -0.40 0.23 16
29 H 0.38 2.55 9.12 45.56 0.42 2.96 16
30 H 0.39 5.79 8.63 -40.82 -0.35 5.44 16
31 H 0.10 1.78 6.33 -52.49 -0.33 1.45 16
32 H 0.12 2.34 8.06 -52.48 -0.42 1.92 16
33 H 0.28 7.52 8.73 -40.82 -0.36 7.16 16
34 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16
LS Contribution 285.13 15.07 4.30 4.30
Total: -1.00 -30.57 285.13 -6.27 -36.83
By element:
Atomic # 1 Polarization: 8.22 SS G_CDS: -3.98 Total: 4.24 kcal
Atomic # 6 Polarization: -11.41 SS G_CDS: -2.15 Total: -13.56 kcal
Atomic # 7 Polarization: -49.57 SS G_CDS: 0.46 Total: -49.11 kcal
Atomic # 8 Polarization: -6.40 SS G_CDS: -0.48 Total: -6.88 kcal
Atomic # 14 Polarization: 28.59 SS G_CDS: -4.41 Total: 24.18 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -30.57 -6.27 -36.83 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308830433.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.652 kcal
(2) G-P(sol) polarization free energy of solvation -30.567 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.219 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.265 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.832 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.485 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds