Wall clock time and date at job start Mon Mar 30 2020 03:41:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08995 * 109.47318 * 2 1
4 4 C 1.52999 * 109.46732 * 240.00460 * 2 1 3
5 5 C 1.53001 * 109.47141 * 174.99756 * 4 2 1
6 6 O 1.42895 * 109.47489 * 179.97438 * 5 4 2
7 7 N 1.46497 * 109.47137 * 120.00648 * 2 1 3
8 8 C 1.39248 * 119.99837 * 274.99463 * 7 2 1
9 9 C 1.39713 * 120.78483 * 0.02562 * 8 7 2
10 10 C 1.38447 * 119.47223 * 179.97438 * 9 8 7
11 11 N 1.31528 * 121.10732 * 359.97438 * 10 9 8
12 12 C 1.33689 * 121.70113 * 0.02562 * 11 10 9
13 13 C 1.41458 * 119.79514 * 180.02562 * 12 11 10
14 14 H 1.08000 * 120.00032 * 188.92620 * 13 12 11
15 15 C 1.40014 * 120.00185 * 8.92808 * 13 12 11
16 16 N 1.30747 * 119.99685 * 195.79751 * 15 13 12
17 17 Si 1.86793 * 119.99804 * 15.79222 * 15 13 12
18 18 H 1.48497 * 109.47692 * 270.00258 * 17 15 13
19 19 H 1.48504 * 109.47275 * 30.00551 * 17 15 13
20 20 H 1.48508 * 109.47041 * 150.00174 * 17 15 13
21 21 C 1.39023 * 120.78355 * 180.25435 * 8 7 2
22 22 H 1.08998 * 109.47806 * 59.99563 * 1 2 3
23 23 H 1.09003 * 109.46985 * 180.02562 * 1 2 3
24 24 H 1.09012 * 109.47098 * 299.99336 * 1 2 3
25 25 H 1.09007 * 109.47245 * 294.99786 * 4 2 1
26 26 H 1.09001 * 109.47305 * 54.99968 * 4 2 1
27 27 H 1.08999 * 109.47378 * 300.00135 * 5 4 2
28 28 H 1.09001 * 109.46848 * 59.99932 * 5 4 2
29 29 H 0.96698 * 114.00361 * 180.02562 * 6 5 4
30 30 H 0.96999 * 120.00320 * 95.00344 * 7 2 1
31 31 H 1.08001 * 120.26011 * 0.02562 * 9 8 7
32 32 H 1.08003 * 119.44319 * 179.97438 * 10 9 8
33 33 H 0.96993 * 120.00550 * 354.79505 * 16 15 13
34 34 H 1.07997 * 120.56458 * 0.02562 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0399 -0.7212 -1.2493
5 6 3.5647 -0.6132 -1.3139
6 8 4.0411 -1.2872 -2.4804
7 7 2.0183 -0.6907 1.1961
8 6 2.1514 0.0039 2.3956
9 6 1.8235 1.3595 2.4771
10 6 1.9657 2.0234 3.6836
11 7 2.4041 1.3992 4.7552
12 6 2.7309 0.1031 4.7287
13 6 3.1977 -0.5282 5.9054
14 1 3.5980 -1.5302 5.8582
15 6 3.1409 0.1459 7.1313
16 7 3.8367 -0.2889 8.1493
17 14 2.0710 1.6664 7.3123
18 1 2.8641 2.8737 6.9679
19 1 0.9050 1.5629 6.3985
20 1 1.5932 1.7714 8.7144
21 6 2.6182 -0.6341 3.5392
22 1 -0.3634 0.5139 -0.8899
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3634 0.5138 0.8901
25 1 1.7515 -1.7715 -1.2057
26 1 1.6052 -0.2616 -2.1370
27 1 3.8531 0.4370 -1.3575
28 1 3.9994 -1.0728 -0.4262
29 1 5.0019 -1.2596 -2.5858
30 1 2.2491 -1.6319 1.1524
31 1 1.4611 1.8851 1.6059
32 1 1.7125 3.0715 3.7460
33 1 4.3325 -1.1196 8.0786
34 1 2.8855 -1.6802 3.5141
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308830433.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:18
Heat of formation + Delta-G solvation = -67.870059 kcal
Electronic energy + Delta-G solvation = -16364.847402 eV
Core-core repulsion = 13681.306034 eV
Total energy + Delta-G solvation = -2683.541368 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.59094 -38.78087 -37.28279 -35.60615 -33.79645 -32.15114 -30.11995 -29.61240
-27.31846 -24.31963 -23.69432 -22.89244 -21.33471 -20.28573 -18.42348 -17.96810
-17.20422 -16.49851 -16.25000 -15.77171 -15.53696 -15.42134 -14.77957 -14.51284
-14.34696 -14.03940 -13.84676 -13.59829 -12.92454 -12.87743 -12.60844 -12.23520
-12.14966 -11.99015 -11.77558 -11.63629 -11.20366 -11.09248 -10.93686 -9.81863
-9.65318 -9.21028 -8.49099 -6.75834 0.80771 1.12781 1.62344 1.76568
2.06362 2.50296 2.56973 2.71829 3.18871 3.72269 3.98000 4.00388
4.10181 4.21997 4.40335 4.51607 4.55862 4.62578 4.65725 4.82179
4.89719 4.95941 4.99999 5.08745 5.21747 5.36236 5.43173 5.54569
5.55661 5.67645 6.10182 6.31778 6.67057 6.77338 6.80426 6.93072
7.79581 8.01101
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.039266 B = 0.005819 C = 0.005392
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 712.917709 B = 4810.764414 C = 5192.100981
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.153 3.847
3 H 0.082 0.918
4 C -0.117 4.117
5 C 0.075 3.925
6 O -0.592 6.592
7 N -0.735 5.735
8 C 0.281 3.719
9 C -0.346 4.346
10 C 0.155 3.845
11 N -0.618 5.618
12 C 0.264 3.736
13 C -0.524 4.524
14 H 0.056 0.944
15 C 0.021 3.979
16 N -0.835 5.835
17 Si 1.183 2.817
18 H -0.283 1.283
19 H -0.284 1.284
20 H -0.326 1.326
21 C -0.359 4.359
22 H 0.085 0.915
23 H 0.055 0.945
24 H 0.047 0.953
25 H 0.071 0.929
26 H 0.097 0.903
27 H 0.052 0.948
28 H 0.038 0.962
29 H 0.396 0.604
30 H 0.397 0.603
31 H 0.139 0.861
32 H 0.161 0.839
33 H 0.278 0.722
34 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.869 1.859 -18.333 18.829
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.049 3.951
3 H 0.100 0.900
4 C -0.155 4.155
5 C -0.002 4.002
6 O -0.400 6.400
7 N -0.365 5.365
8 C 0.171 3.829
9 C -0.373 4.373
10 C -0.005 4.005
11 N -0.339 5.339
12 C 0.141 3.859
13 C -0.557 4.557
14 H 0.074 0.926
15 C -0.195 4.195
16 N -0.458 5.458
17 Si 1.014 2.986
18 H -0.209 1.209
19 H -0.211 1.211
20 H -0.258 1.258
21 C -0.386 4.386
22 H 0.104 0.896
23 H 0.074 0.926
24 H 0.066 0.934
25 H 0.089 0.911
26 H 0.115 0.885
27 H 0.070 0.930
28 H 0.056 0.944
29 H 0.246 0.754
30 H 0.231 0.769
31 H 0.157 0.843
32 H 0.178 0.822
33 H 0.088 0.912
34 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -4.783 3.343 -16.722 17.711
hybrid contribution 1.550 -2.603 -1.296 3.295
sum -3.233 0.740 -18.018 18.321
Atomic orbital electron populations
1.22223 0.94860 1.02381 1.02617 1.20914 0.94285 0.96900 0.83024
0.89987 1.21722 0.94165 1.01944 0.97648 1.22158 0.95168 0.95988
0.86919 1.86381 1.29084 1.78936 1.45634 1.44708 1.73062 1.12082
1.06654 1.17746 0.88441 0.91423 0.85325 1.21157 1.22015 0.93965
1.00212 1.22583 0.90483 0.99451 0.88016 1.66691 1.25496 1.10417
1.31299 1.18399 0.86811 0.88033 0.92683 1.20638 1.38895 1.02185
0.93941 0.92608 1.28502 0.94495 1.05479 0.90983 1.70660 1.20670
1.19940 1.34572 0.81590 0.75325 0.71175 0.70544 1.20947 1.21102
1.25841 1.21060 1.23103 0.99997 0.94395 0.89628 0.92634 0.93355
0.91054 0.88477 0.93012 0.94409 0.75427 0.76859 0.84338 0.82230
0.91168 0.88675
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.22 9.47 71.98 0.68 -2.54 16
2 C 0.15 3.30 2.28 44.99 0.10 3.41 16
3 H 0.08 1.79 6.54 -2.39 -0.02 1.77 16
4 C -0.12 -2.13 5.12 30.59 0.16 -1.98 16
5 C 0.08 1.47 6.93 71.98 0.50 1.97 16
6 O -0.59 -11.33 13.66 -148.98 -2.03 -13.36 16
7 N -0.73 -21.10 4.69 -318.56 -1.49 -22.59 16
8 C 0.28 10.81 6.67 38.51 0.26 11.07 16
9 C -0.35 -12.74 8.97 22.68 0.20 -12.54 16
10 C 0.15 6.42 11.17 84.79 0.95 7.37 16
11 N -0.62 -31.34 5.03 -189.38 -0.95 -32.29 16
12 C 0.26 14.29 6.27 40.18 0.25 14.54 16
13 C -0.52 -30.68 9.51 23.49 0.22 -30.45 16
14 H 0.06 3.36 8.06 -2.91 -0.02 3.33 16
15 C 0.02 1.23 5.51 85.29 0.47 1.70 16
16 N -0.83 -48.38 13.65 21.83 0.30 -48.08 16
17 Si 1.18 58.79 25.93 68.60 1.78 60.57 16
18 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16
19 H -0.28 -14.03 6.54 99.48 0.65 -13.38 16
20 H -0.33 -15.62 7.11 99.48 0.71 -14.92 16
21 C -0.36 -17.00 9.72 22.99 0.22 -16.78 16
22 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
23 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16
24 H 0.05 1.15 7.81 -2.38 -0.02 1.13 16
25 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16
26 H 0.10 1.50 8.14 -2.39 -0.02 1.49 16
27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16
28 H 0.04 0.83 7.75 -2.39 -0.02 0.81 16
29 H 0.40 4.30 9.12 -74.06 -0.68 3.62 16
30 H 0.40 10.80 8.63 -92.71 -0.80 10.00 16
31 H 0.14 4.09 6.33 -2.91 -0.02 4.07 16
32 H 0.16 5.37 8.06 -2.91 -0.02 5.34 16
33 H 0.28 15.67 8.73 -92.71 -0.81 14.86 16
34 H 0.10 4.44 8.06 -2.91 -0.02 4.41 16
Total: -1.00 -67.00 285.13 1.15 -65.84
By element:
Atomic # 1 Polarization: 14.61 SS G_CDS: -0.46 Total: 14.15 kcal
Atomic # 6 Polarization: -28.25 SS G_CDS: 4.02 Total: -24.24 kcal
Atomic # 7 Polarization: -100.82 SS G_CDS: -2.15 Total: -102.96 kcal
Atomic # 8 Polarization: -11.33 SS G_CDS: -2.03 Total: -13.36 kcal
Atomic # 14 Polarization: 58.79 SS G_CDS: 1.78 Total: 60.57 kcal
Total: -67.00 1.15 -65.84 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308830433.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.027 kcal
(2) G-P(sol) polarization free energy of solvation -66.996 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.023 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.843 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.870 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds