Wall clock time and date at job start Mon Mar 30 2020 03:41:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08997 * 109.46957 * 2 1
4 4 C 1.53004 * 109.46856 * 119.99276 * 2 1 3
5 5 C 1.53002 * 109.47083 * 185.00256 * 4 2 1
6 6 O 1.42897 * 109.46998 * 180.02562 * 5 4 2
7 7 N 1.46491 * 109.47487 * 239.99368 * 2 1 3
8 8 C 1.39248 * 119.99881 * 84.99915 * 7 2 1
9 9 C 1.39714 * 120.78469 * 0.02562 * 8 7 2
10 10 C 1.38448 * 119.47466 * 180.02562 * 9 8 7
11 11 N 1.31529 * 121.10447 * 359.97438 * 10 9 8
12 12 C 1.33693 * 121.70573 * 0.02562 * 11 10 9
13 13 C 1.41458 * 119.80099 * 180.02562 * 12 11 10
14 14 H 1.07996 * 119.99680 * 187.18837 * 13 12 11
15 15 C 1.40006 * 119.99852 * 7.18983 * 13 12 11
16 16 N 1.30747 * 120.00052 * 7.22166 * 15 13 12
17 17 Si 1.86800 * 120.00059 * 187.22516 * 15 13 12
18 18 H 1.48500 * 109.46869 * 265.16954 * 17 15 13
19 19 H 1.48502 * 109.46790 * 25.16519 * 17 15 13
20 20 H 1.48503 * 109.47204 * 145.16702 * 17 15 13
21 21 C 1.39029 * 120.78537 * 180.29814 * 8 7 2
22 22 H 1.08997 * 109.46957 * 179.97438 * 1 2 3
23 23 H 1.08995 * 109.47072 * 300.00576 * 1 2 3
24 24 H 1.09003 * 109.46854 * 60.00300 * 1 2 3
25 25 H 1.08994 * 109.47020 * 305.00460 * 4 2 1
26 26 H 1.09000 * 109.46682 * 65.00481 * 4 2 1
27 27 H 1.09002 * 109.46766 * 300.00038 * 5 4 2
28 28 H 1.08996 * 109.47360 * 60.00054 * 5 4 2
29 29 H 0.96702 * 113.99828 * 180.02562 * 6 5 4
30 30 H 0.96997 * 120.00308 * 265.00266 * 7 2 1
31 31 H 1.08006 * 120.26212 * 0.03309 * 9 8 7
32 32 H 1.07998 * 119.44640 * 179.97438 * 10 9 8
33 33 H 0.97007 * 120.00287 * 180.02562 * 16 15 13
34 34 H 1.07999 * 120.55734 * 359.97438 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7211 1.2494
5 6 3.5648 -0.6131 1.3139
6 8 4.0411 -1.2871 2.4804
7 7 2.0184 -0.6907 -1.1960
8 6 2.1514 0.0039 -2.3955
9 6 1.8244 1.3597 -2.4768
10 6 1.9665 2.0236 -3.6834
11 7 2.4049 1.3994 -4.7549
12 6 2.7310 0.1031 -4.7288
13 6 3.1990 -0.5279 -5.9051
14 1 3.3527 -1.5968 -5.9199
15 6 3.4628 0.2332 -7.0502
16 7 3.4135 1.5385 -6.9933
17 14 3.8854 -0.6162 -8.6594
18 1 5.3611 -0.6998 -8.8023
19 1 3.3094 -1.9849 -8.6627
20 1 3.3215 0.1610 -9.7923
21 6 2.6075 -0.6369 -3.5420
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3633 0.5139 0.8899
24 1 -0.3633 0.5138 -0.8900
25 1 1.6053 -0.2616 2.1370
26 1 1.7517 -1.7714 1.2057
27 1 3.9995 -1.0727 0.4262
28 1 3.8532 0.4371 1.3575
29 1 5.0019 -1.2588 2.5863
30 1 2.2491 -1.6318 -1.1524
31 1 1.4636 1.8858 -1.6053
32 1 1.7132 3.0716 -3.7458
33 1 3.5960 2.0659 -7.7868
34 1 2.8664 -1.6851 -3.5190
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308830434.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:20
Heat of formation + Delta-G solvation = -27.851312 kcal
Electronic energy + Delta-G solvation = -16269.003665 eV
Core-core repulsion = 13587.197640 eV
Total energy + Delta-G solvation = -2681.806025 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-38.61490 -37.35801 -35.96268 -33.47381 -32.02182 -29.86965 -28.87395 -27.79045
-25.57437 -23.17949 -21.79546 -21.23534 -19.90882 -17.70045 -17.34499 -16.04036
-15.29766 -15.17281 -14.69816 -14.40802 -14.06242 -13.61465 -13.19861 -12.84346
-12.62309 -12.22359 -11.97078 -11.90847 -11.59912 -11.23224 -11.13590 -11.03512
-10.78246 -10.58733 -10.36924 -10.01350 -9.73555 -9.68746 -9.09126 -7.54817
-7.42075 -6.66115 -6.36443 -4.44020 2.85253 3.12748 3.16177 3.21491
3.38190 3.99028 4.09092 4.11885 4.84178 5.00773 5.06264 5.23436
5.48927 5.56910 5.66999 5.83145 5.94088 5.99456 6.07020 6.18125
6.20133 6.42821 6.52246 6.74805 6.97009 7.14578 7.23847 7.52423
7.54480 7.66445 7.72751 8.31068 8.43862 8.51725 8.82372 9.06409
10.26213 10.42649
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.037232 B = 0.005321 C = 0.004996
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 751.864298 B = 5260.552464 C = 5603.378364
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.158 3.842
3 H 0.078 0.922
4 C -0.124 4.124
5 C 0.075 3.925
6 O -0.580 6.580
7 N -0.750 5.750
8 C 0.257 3.743
9 C -0.372 4.372
10 C 0.149 3.851
11 N -0.510 5.510
12 C 0.285 3.715
13 C -0.439 4.439
14 H 0.080 0.920
15 C 0.074 3.926
16 N -0.720 5.720
17 Si 0.904 3.096
18 H -0.271 1.271
19 H -0.262 1.262
20 H -0.276 1.276
21 C -0.346 4.346
22 H 0.052 0.948
23 H 0.055 0.945
24 H 0.065 0.935
25 H 0.077 0.923
26 H 0.070 0.930
27 H 0.052 0.948
28 H 0.045 0.955
29 H 0.378 0.622
30 H 0.388 0.612
31 H 0.092 0.908
32 H 0.115 0.885
33 H 0.272 0.728
34 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.616 -2.342 10.820 11.087
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.051 3.949
3 H 0.096 0.904
4 C -0.162 4.162
5 C -0.003 4.003
6 O -0.386 6.386
7 N -0.383 5.383
8 C 0.151 3.849
9 C -0.400 4.400
10 C -0.018 4.018
11 N -0.225 5.225
12 C 0.161 3.839
13 C -0.470 4.470
14 H 0.098 0.902
15 C -0.151 4.151
16 N -0.341 5.341
17 Si 0.728 3.272
18 H -0.196 1.196
19 H -0.186 1.186
20 H -0.201 1.201
21 C -0.373 4.373
22 H 0.072 0.928
23 H 0.074 0.926
24 H 0.084 0.916
25 H 0.096 0.904
26 H 0.089 0.911
27 H 0.071 0.929
28 H 0.064 0.936
29 H 0.225 0.775
30 H 0.222 0.778
31 H 0.110 0.890
32 H 0.133 0.867
33 H 0.083 0.917
34 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -1.180 -1.696 10.059 10.269
hybrid contribution 0.748 -1.018 0.068 1.265
sum -0.432 -2.714 10.127 10.493
Atomic orbital electron populations
1.22258 0.96223 1.01908 1.01994 1.20621 0.93385 0.96909 0.83970
0.90428 1.21794 0.94212 1.01972 0.98224 1.22208 0.95080 0.95763
0.87200 1.86426 1.27126 1.78954 1.46073 1.44490 1.75070 1.11538
1.07239 1.17650 0.91423 0.91116 0.84669 1.20852 1.24976 0.94284
0.99870 1.22255 0.92660 0.98046 0.88843 1.68671 1.16966 1.09672
1.27144 1.18311 0.87091 0.87694 0.90825 1.19555 1.37881 0.94965
0.94562 0.90157 1.26023 0.93883 0.94683 1.00489 1.70094 1.29144
1.05594 1.29294 0.86386 0.79192 0.80501 0.81116 1.19616 1.18556
1.20084 1.21157 1.22478 0.99888 0.93776 0.92842 0.92630 0.91584
0.90436 0.91117 0.92946 0.93630 0.77547 0.77823 0.88955 0.86745
0.91708 0.88877
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.19 9.47 37.16 0.35 -1.84 16
2 C 0.16 2.23 2.28 -67.93 -0.16 2.07 16
3 H 0.08 1.17 6.53 -51.93 -0.34 0.83 16
4 C -0.12 -1.50 5.12 -26.73 -0.14 -1.64 16
5 C 0.08 0.92 6.93 37.16 0.26 1.18 16
6 O -0.58 -6.79 13.66 -35.23 -0.48 -7.28 16
7 N -0.75 -12.87 4.69 -52.04 -0.24 -13.11 16
8 C 0.26 5.66 6.67 -83.65 -0.56 5.10 16
9 C -0.37 -8.32 8.97 -38.95 -0.35 -8.67 16
10 C 0.15 3.68 11.17 -17.60 -0.20 3.48 16
11 N -0.51 -14.37 7.97 -11.21 -0.09 -14.46 16
12 C 0.29 7.98 6.52 -85.02 -0.55 7.43 16
13 C -0.44 -12.05 9.13 -37.69 -0.34 -12.40 16
14 H 0.08 2.08 7.86 -52.49 -0.41 1.66 16
15 C 0.07 1.94 5.47 -17.35 -0.09 1.84 16
16 N -0.72 -19.62 11.57 55.55 0.64 -18.97 16
17 Si 0.90 18.95 29.57 -169.99 -5.03 13.92 16
18 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16
19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16
20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16
21 C -0.35 -8.63 9.72 -38.47 -0.37 -9.00 16
22 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16
23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
24 H 0.07 1.01 7.82 -51.93 -0.41 0.61 16
25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16
26 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16
27 H 0.05 0.69 7.75 -51.93 -0.40 0.29 16
28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
29 H 0.38 2.77 9.12 45.56 0.42 3.19 16
30 H 0.39 6.19 8.63 -40.82 -0.35 5.84 16
31 H 0.09 1.83 6.33 -52.48 -0.33 1.50 16
32 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16
33 H 0.27 6.69 8.29 -40.82 -0.34 6.35 16
34 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16
LS Contribution 289.40 15.07 4.36 4.36
Total: -1.00 -30.93 289.40 -6.91 -37.84
By element:
Atomic # 1 Polarization: 14.07 SS G_CDS: -3.92 Total: 10.15 kcal
Atomic # 6 Polarization: -10.29 SS G_CDS: -2.15 Total: -12.45 kcal
Atomic # 7 Polarization: -46.86 SS G_CDS: 0.31 Total: -46.55 kcal
Atomic # 8 Polarization: -6.79 SS G_CDS: -0.48 Total: -7.28 kcal
Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal
Total LS contribution 4.36 Total: 4.36 kcal
Total: -30.93 -6.91 -37.84 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308830434.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.989 kcal
(2) G-P(sol) polarization free energy of solvation -30.926 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.938 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.840 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.851 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds