Wall clock time and date at job start Mon Mar 30 2020 03:41:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08997 * 109.46957 * 2 1
4 4 C 1.53004 * 109.46856 * 119.99276 * 2 1 3
5 5 C 1.53002 * 109.47083 * 185.00256 * 4 2 1
6 6 O 1.42897 * 109.46998 * 180.02562 * 5 4 2
7 7 N 1.46491 * 109.47487 * 239.99368 * 2 1 3
8 8 C 1.39248 * 119.99881 * 84.99915 * 7 2 1
9 9 C 1.39714 * 120.78469 * 0.02562 * 8 7 2
10 10 C 1.38448 * 119.47466 * 180.02562 * 9 8 7
11 11 N 1.31529 * 121.10447 * 359.97438 * 10 9 8
12 12 C 1.33693 * 121.70573 * 0.02562 * 11 10 9
13 13 C 1.41458 * 119.80099 * 180.02562 * 12 11 10
14 14 H 1.07996 * 119.99680 * 187.18837 * 13 12 11
15 15 C 1.40006 * 119.99852 * 7.18983 * 13 12 11
16 16 N 1.30747 * 120.00052 * 7.22166 * 15 13 12
17 17 Si 1.86800 * 120.00059 * 187.22516 * 15 13 12
18 18 H 1.48500 * 109.46869 * 265.16954 * 17 15 13
19 19 H 1.48502 * 109.46790 * 25.16519 * 17 15 13
20 20 H 1.48503 * 109.47204 * 145.16702 * 17 15 13
21 21 C 1.39029 * 120.78537 * 180.29814 * 8 7 2
22 22 H 1.08997 * 109.46957 * 179.97438 * 1 2 3
23 23 H 1.08995 * 109.47072 * 300.00576 * 1 2 3
24 24 H 1.09003 * 109.46854 * 60.00300 * 1 2 3
25 25 H 1.08994 * 109.47020 * 305.00460 * 4 2 1
26 26 H 1.09000 * 109.46682 * 65.00481 * 4 2 1
27 27 H 1.09002 * 109.46766 * 300.00038 * 5 4 2
28 28 H 1.08996 * 109.47360 * 60.00054 * 5 4 2
29 29 H 0.96702 * 113.99828 * 180.02562 * 6 5 4
30 30 H 0.96997 * 120.00308 * 265.00266 * 7 2 1
31 31 H 1.08006 * 120.26212 * 0.03309 * 9 8 7
32 32 H 1.07998 * 119.44640 * 179.97438 * 10 9 8
33 33 H 0.97007 * 120.00287 * 180.02562 * 16 15 13
34 34 H 1.07999 * 120.55734 * 359.97438 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7211 1.2494
5 6 3.5648 -0.6131 1.3139
6 8 4.0411 -1.2871 2.4804
7 7 2.0184 -0.6907 -1.1960
8 6 2.1514 0.0039 -2.3955
9 6 1.8244 1.3597 -2.4768
10 6 1.9665 2.0236 -3.6834
11 7 2.4049 1.3994 -4.7549
12 6 2.7310 0.1031 -4.7288
13 6 3.1990 -0.5279 -5.9051
14 1 3.3527 -1.5968 -5.9199
15 6 3.4628 0.2332 -7.0502
16 7 3.4135 1.5385 -6.9933
17 14 3.8854 -0.6162 -8.6594
18 1 5.3611 -0.6998 -8.8023
19 1 3.3094 -1.9849 -8.6627
20 1 3.3215 0.1610 -9.7923
21 6 2.6075 -0.6369 -3.5420
22 1 -0.3633 -1.0276 -0.0005
23 1 -0.3633 0.5139 0.8899
24 1 -0.3633 0.5138 -0.8900
25 1 1.6053 -0.2616 2.1370
26 1 1.7517 -1.7714 1.2057
27 1 3.9995 -1.0727 0.4262
28 1 3.8532 0.4371 1.3575
29 1 5.0019 -1.2588 2.5863
30 1 2.2491 -1.6318 -1.1524
31 1 1.4636 1.8858 -1.6053
32 1 1.7132 3.0716 -3.7458
33 1 3.5960 2.0659 -7.7868
34 1 2.8664 -1.6851 -3.5190
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308830434.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:20
Heat of formation + Delta-G solvation = -50.308709 kcal
Electronic energy + Delta-G solvation = -16269.977491 eV
Core-core repulsion = 13587.197640 eV
Total energy + Delta-G solvation = -2682.779850 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.28610 -38.63455 -37.18516 -35.32965 -33.53765 -31.78276 -29.98190 -29.41022
-27.50535 -24.27016 -23.56037 -22.87559 -21.33592 -19.47264 -18.33260 -17.69684
-16.81317 -16.72446 -16.10267 -15.85338 -15.41977 -15.18592 -14.77911 -14.33488
-14.03422 -13.96950 -13.53197 -12.98559 -12.86174 -12.83382 -12.78101 -12.47254
-12.14138 -12.08302 -11.86718 -11.54847 -11.33204 -10.95490 -10.89746 -9.50872
-9.37487 -8.33311 -8.27076 -6.46569 0.99813 1.41068 1.42271 1.55627
1.61195 2.25495 2.68503 2.91627 3.20854 4.00075 4.00897 4.09528
4.24146 4.30736 4.43978 4.54969 4.62505 4.73076 4.80691 4.87765
4.96737 5.01285 5.11642 5.14511 5.25100 5.37734 5.45496 5.74186
5.75907 5.91654 6.32591 6.64960 6.82140 6.86832 7.00446 7.13893
8.33660 8.52391
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.037232 B = 0.005321 C = 0.004996
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 751.864298 B = 5260.552464 C = 5603.378364
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.155 3.845
3 H 0.073 0.927
4 C -0.115 4.115
5 C 0.076 3.924
6 O -0.591 6.591
7 N -0.737 5.737
8 C 0.268 3.732
9 C -0.363 4.363
10 C 0.129 3.871
11 N -0.550 5.550
12 C 0.253 3.747
13 C -0.479 4.479
14 H 0.082 0.918
15 C 0.029 3.971
16 N -0.761 5.761
17 Si 0.985 3.015
18 H -0.261 1.261
19 H -0.258 1.258
20 H -0.268 1.268
21 C -0.369 4.369
22 H 0.057 0.943
23 H 0.083 0.917
24 H 0.042 0.958
25 H 0.095 0.905
26 H 0.073 0.927
27 H 0.039 0.961
28 H 0.048 0.952
29 H 0.396 0.604
30 H 0.396 0.604
31 H 0.122 0.878
32 H 0.134 0.866
33 H 0.278 0.722
34 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.863 -2.853 12.198 12.557
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C 0.050 3.950
3 H 0.091 0.909
4 C -0.153 4.153
5 C -0.001 4.001
6 O -0.399 6.399
7 N -0.369 5.369
8 C 0.159 3.841
9 C -0.391 4.391
10 C -0.036 4.036
11 N -0.266 5.266
12 C 0.129 3.871
13 C -0.510 4.510
14 H 0.100 0.900
15 C -0.192 4.192
16 N -0.384 5.384
17 Si 0.805 3.195
18 H -0.186 1.186
19 H -0.181 1.181
20 H -0.192 1.192
21 C -0.396 4.396
22 H 0.076 0.924
23 H 0.102 0.898
24 H 0.061 0.939
25 H 0.114 0.886
26 H 0.092 0.908
27 H 0.057 0.943
28 H 0.067 0.933
29 H 0.246 0.754
30 H 0.230 0.770
31 H 0.140 0.860
32 H 0.152 0.848
33 H 0.089 0.911
34 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -1.427 -2.215 11.508 11.806
hybrid contribution 0.789 -0.841 -0.116 1.159
sum -0.638 -3.056 11.392 11.812
Atomic orbital electron populations
1.22206 0.95119 1.02331 1.02276 1.20830 0.94139 0.96634 0.83385
0.90868 1.21705 0.94170 1.01964 0.97484 1.22133 0.95172 0.95851
0.86973 1.86378 1.29078 1.78868 1.45575 1.44577 1.73872 1.11856
1.06604 1.17666 0.89626 0.91210 0.85573 1.21099 1.23535 0.94442
1.00016 1.22705 0.92538 0.99131 0.89197 1.68610 1.18781 1.10205
1.28990 1.18736 0.87846 0.88318 0.92202 1.19901 1.39794 0.95399
0.95908 0.89965 1.26945 0.93098 0.95240 1.03960 1.70188 1.30261
1.07209 1.30694 0.85170 0.79213 0.79173 0.75913 1.18596 1.18133
1.19203 1.21240 1.23916 1.00185 0.94290 0.92404 0.89783 0.93853
0.88612 0.90842 0.94294 0.93324 0.75430 0.76985 0.86007 0.84821
0.91108 0.88469
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.79 9.47 71.98 0.68 -3.11 16
2 C 0.16 3.96 2.28 45.00 0.10 4.06 16
3 H 0.07 1.98 6.53 -2.39 -0.02 1.97 16
4 C -0.12 -2.42 5.12 30.60 0.16 -2.27 16
5 C 0.08 1.69 6.93 71.98 0.50 2.19 16
6 O -0.59 -12.30 13.66 -148.98 -2.03 -14.34 16
7 N -0.74 -24.03 4.69 -318.54 -1.49 -25.53 16
8 C 0.27 11.64 6.67 38.51 0.26 11.90 16
9 C -0.36 -15.89 8.97 22.68 0.20 -15.69 16
10 C 0.13 6.43 11.17 84.79 0.95 7.38 16
11 N -0.55 -31.91 7.97 -189.38 -1.51 -33.42 16
12 C 0.25 14.67 6.52 40.18 0.26 14.93 16
13 C -0.48 -27.23 9.13 23.49 0.21 -27.01 16
14 H 0.08 4.41 7.86 -2.91 -0.02 4.39 16
15 C 0.03 1.53 5.47 85.28 0.47 2.00 16
16 N -0.76 -42.66 11.57 21.83 0.25 -42.41 16
17 Si 0.99 39.46 29.57 68.60 2.03 41.49 16
18 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16
19 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16
20 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16
21 C -0.37 -18.75 9.72 22.99 0.22 -18.53 16
22 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16
23 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16
24 H 0.04 1.23 7.82 -2.39 -0.02 1.21 16
25 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16
26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16
27 H 0.04 0.95 7.75 -2.39 -0.02 0.94 16
28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16
29 H 0.40 4.88 9.12 -74.06 -0.68 4.20 16
30 H 0.40 11.96 8.63 -92.71 -0.80 11.16 16
31 H 0.12 4.54 6.33 -2.91 -0.02 4.52 16
32 H 0.13 5.88 8.06 -2.91 -0.02 5.86 16
33 H 0.28 14.04 8.29 -92.70 -0.77 13.27 16
34 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16
Total: -1.00 -68.10 289.40 0.89 -67.21
By element:
Atomic # 1 Polarization: 31.51 SS G_CDS: -0.36 Total: 31.14 kcal
Atomic # 6 Polarization: -28.16 SS G_CDS: 4.01 Total: -24.14 kcal
Atomic # 7 Polarization: -98.61 SS G_CDS: -2.75 Total: -101.36 kcal
Atomic # 8 Polarization: -12.30 SS G_CDS: -2.03 Total: -14.34 kcal
Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal
Total: -68.10 0.89 -67.21 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308830434.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.900 kcal
(2) G-P(sol) polarization free energy of solvation -68.104 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.203 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.209 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.309 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds