Wall clock time and date at job start Mon Mar 30 2020 03:44:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09000 * 109.47261 * 2 1
4 4 C 1.50702 * 109.47093 * 119.99595 * 2 1 3
5 5 H 1.07990 * 120.00179 * 120.00158 * 4 2 1
6 6 C 1.37882 * 119.99949 * 300.00418 * 4 2 1
7 7 N 1.31516 * 119.99896 * 180.02562 * 6 4 2
8 8 Si 1.86801 * 119.99963 * 359.97438 * 6 4 2
9 9 H 1.48497 * 109.47158 * 90.00196 * 8 6 4
10 10 H 1.48504 * 109.46879 * 210.00386 * 8 6 4
11 11 H 1.48503 * 109.47008 * 329.99698 * 8 6 4
12 12 N 1.46895 * 109.47616 * 239.99671 * 2 1 3
13 13 C 1.46907 * 111.00010 * 84.99724 * 12 2 1
14 14 C 1.52994 * 109.47118 * 180.02562 * 13 12 2
15 15 O 1.42894 * 109.47573 * 64.99943 * 14 13 12
16 16 C 1.35910 * 117.00621 * 180.02562 * 15 14 13
17 17 C 1.39138 * 120.47706 * 180.24394 * 16 15 14
18 18 C 1.38535 * 118.37336 * 180.24194 * 17 16 15
19 19 C 1.38262 * 119.22035 * 359.47237 * 18 17 16
20 20 N 1.31844 * 120.88422 * 0.30388 * 19 18 17
21 21 C 1.31834 * 121.78446 * 359.97438 * 20 19 18
22 22 H 1.09003 * 109.47603 * 300.00145 * 1 2 3
23 23 H 1.09004 * 109.47356 * 60.00122 * 1 2 3
24 24 H 1.09000 * 109.47261 * 180.02562 * 1 2 3
25 25 H 0.96998 * 119.99887 * 179.97438 * 7 6 4
26 26 H 1.00905 * 110.99791 * 321.05001 * 12 2 1
27 27 H 1.08995 * 109.46465 * 60.00514 * 13 12 2
28 28 H 1.09000 * 109.46993 * 300.00605 * 13 12 2
29 29 H 1.09002 * 109.46851 * 304.99977 * 14 13 12
30 30 H 1.08998 * 109.47422 * 185.00640 * 14 13 12
31 31 H 1.07999 * 120.81005 * 0.02562 * 17 16 15
32 32 H 1.08002 * 120.39207 * 179.75678 * 18 17 16
33 33 H 1.08000 * 119.55595 * 180.28266 * 19 18 17
34 34 H 1.07997 * 119.66066 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7103 1.2305
5 1 2.6532 -1.5883 1.1315
6 6 1.6991 -0.2392 2.4828
7 7 2.1379 -0.8588 3.5567
8 14 0.6257 1.2799 2.6541
9 1 -0.8022 0.8746 2.6992
10 1 0.9770 1.9956 3.9070
11 1 0.8491 2.1774 1.4922
12 7 2.0197 -0.6925 -1.1993
13 6 2.0825 0.2225 -2.3469
14 6 2.5952 -0.5333 -3.5743
15 8 1.6496 -1.5388 -3.9440
16 6 1.9552 -2.3066 -5.0230
17 6 1.0835 -3.3037 -5.4492
18 6 1.4408 -4.0638 -6.5509
19 6 2.6372 -3.8016 -7.1925
20 7 3.4388 -2.8458 -6.7656
21 6 3.1383 -2.1038 -5.7181
22 1 -0.3634 0.5139 0.8900
23 1 -0.3634 0.5138 -0.8900
24 1 -0.3634 -1.0277 0.0005
25 1 1.9038 -0.5272 4.4376
26 1 1.4496 -1.4980 -1.4099
27 1 2.7589 1.0461 -2.1182
28 1 1.0871 0.6162 -2.5525
29 1 3.5508 -1.0020 -3.3394
30 1 2.7263 0.1640 -4.4018
31 1 0.1527 -3.4831 -4.9317
32 1 0.7904 -4.8489 -6.9073
33 1 2.9190 -4.3878 -8.0547
34 1 3.8205 -1.3302 -5.3978
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308885005.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:44:01
Heat of formation + Delta-G solvation = 4.291918 kcal
Electronic energy + Delta-G solvation = -16069.151603 eV
Core-core repulsion = 13388.739414 eV
Total energy + Delta-G solvation = -2680.412190 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.64985 -38.34268 -36.22538 -32.89607 -32.35095 -30.94616 -29.94638 -27.29587
-25.09253 -23.98313 -23.25913 -21.55641 -20.27526 -18.35874 -16.95239 -16.77655
-16.48032 -16.08604 -14.98595 -14.69067 -14.50520 -13.89418 -13.73639 -13.39428
-13.18654 -12.79541 -12.45377 -12.25434 -12.04345 -11.70118 -11.48411 -11.13877
-10.91675 -10.42059 -10.12905 -9.85024 -9.58715 -9.50117 -9.16981 -8.57610
-8.52900 -7.48787 -6.04904 -4.02490 0.97952 1.17663 3.08669 3.24986
3.34021 3.37541 3.67777 4.36140 4.39628 4.56090 4.71152 4.78837
4.88981 5.10534 5.24350 5.25240 5.33188 5.41597 5.54518 5.84574
5.91949 5.94618 6.02323 6.19537 6.28449 6.40891 6.49922 6.71305
7.09944 7.21015 7.68575 7.81230 7.86596 8.29341 8.68269 9.06482
9.57437 11.08687
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.052617 B = 0.004437 C = 0.004414
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 532.020351 B = 6309.033767 C = 6342.186165
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.182 3.818
3 H 0.034 0.966
4 C -0.499 4.499
5 H 0.081 0.919
6 C 0.067 3.933
7 N -0.901 5.901
8 Si 0.887 3.113
9 H -0.281 1.281
10 H -0.297 1.297
11 H -0.270 1.270
12 N -0.671 5.671
13 C 0.059 3.941
14 C 0.058 3.942
15 O -0.305 6.305
16 C 0.092 3.908
17 C -0.114 4.114
18 C -0.133 4.133
19 C 0.050 3.950
20 N -0.452 5.452
21 C 0.013 3.987
22 H 0.045 0.955
23 H 0.026 0.974
24 H 0.054 0.946
25 H 0.263 0.737
26 H 0.338 0.662
27 H 0.089 0.911
28 H 0.031 0.969
29 H 0.076 0.924
30 H 0.063 0.937
31 H 0.142 0.858
32 H 0.140 0.860
33 H 0.155 0.845
34 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.298 -1.833 -19.352 19.574
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C 0.073 3.927
3 H 0.052 0.948
4 C -0.537 4.537
5 H 0.100 0.900
6 C -0.134 4.134
7 N -0.540 5.540
8 Si 0.718 3.282
9 H -0.208 1.208
10 H -0.224 1.224
11 H -0.195 1.195
12 N -0.302 5.302
13 C -0.071 4.071
14 C -0.017 4.017
15 O -0.217 6.217
16 C 0.044 3.956
17 C -0.140 4.140
18 C -0.152 4.152
19 C -0.108 4.108
20 N -0.161 5.161
21 C -0.145 4.145
22 H 0.063 0.937
23 H 0.045 0.955
24 H 0.073 0.927
25 H 0.073 0.927
26 H 0.156 0.844
27 H 0.107 0.893
28 H 0.049 0.951
29 H 0.094 0.906
30 H 0.081 0.919
31 H 0.160 0.840
32 H 0.157 0.843
33 H 0.172 0.828
34 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges -1.008 -1.574 -19.271 19.361
hybrid contribution -2.268 0.839 0.474 2.464
sum -3.276 -0.736 -18.797 19.095
Atomic orbital electron populations
1.22846 1.01418 1.00980 0.98821 1.19657 0.88663 0.95067 0.89351
0.94844 1.20978 1.31231 1.13788 0.87732 0.90049 1.24948 0.95983
0.96641 0.95864 1.69885 1.45883 1.40359 0.97838 0.86879 0.80583
0.83899 0.76837 1.20789 1.22424 1.19535 1.60686 1.58233 1.08839
1.02422 1.22023 0.99870 0.95663 0.89579 1.23135 0.92578 0.88828
0.97163 1.86109 1.47003 1.45930 1.42623 1.20117 0.94703 0.92422
0.88378 1.20995 1.00377 0.94926 0.97749 1.22002 0.98091 0.99696
0.95439 1.22612 0.91586 0.96209 1.00401 1.67502 1.32285 1.04476
1.11850 1.22966 0.95838 1.01366 0.94289 0.93667 0.95492 0.92677
0.92680 0.84414 0.89272 0.95114 0.90577 0.91912 0.84009 0.84266
0.82770 0.82423
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.92 8.64 37.16 0.32 -3.60 16
2 C 0.18 4.24 2.16 -68.87 -0.15 4.09 16
3 H 0.03 0.80 6.86 -51.93 -0.36 0.45 16
4 C -0.50 -14.09 9.42 -34.44 -0.32 -14.41 16
5 H 0.08 2.54 8.06 -52.49 -0.42 2.11 16
6 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16
7 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16
8 Si 0.89 21.88 24.37 -169.99 -4.14 17.73 16
9 H -0.28 -6.76 6.87 56.52 0.39 -6.38 16
10 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16
11 H -0.27 -6.35 6.53 56.52 0.37 -5.98 16
12 N -0.67 -13.45 6.23 -107.96 -0.67 -14.12 16
13 C 0.06 0.92 5.90 -3.82 -0.02 0.90 16
14 C 0.06 0.75 5.09 37.15 0.19 0.94 16
15 O -0.30 -4.31 9.67 -19.46 -0.19 -4.50 16
16 C 0.09 1.19 6.71 -39.07 -0.26 0.93 16
17 C -0.11 -1.28 10.13 -39.14 -0.40 -1.67 16
18 C -0.13 -1.23 10.11 -39.46 -0.40 -1.63 16
19 C 0.05 0.51 11.18 -17.54 -0.20 0.31 16
20 N -0.45 -5.75 10.35 -13.13 -0.14 -5.88 16
21 C 0.01 0.17 10.22 -17.38 -0.18 -0.01 16
22 H 0.04 1.02 3.27 -51.93 -0.17 0.85 16
23 H 0.03 0.50 7.45 -51.93 -0.39 0.11 16
24 H 0.05 1.16 8.13 -51.93 -0.42 0.74 16
25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
26 H 0.34 6.68 8.03 -39.29 -0.32 6.36 16
27 H 0.09 1.33 8.05 -51.93 -0.42 0.92 16
28 H 0.03 0.48 7.44 -51.93 -0.39 0.09 16
29 H 0.08 0.99 7.68 -51.93 -0.40 0.59 16
30 H 0.06 0.65 7.68 -51.93 -0.40 0.25 16
31 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16
32 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16
33 H 0.16 1.12 8.06 -52.49 -0.42 0.70 16
34 H 0.16 1.72 6.32 -52.49 -0.33 1.39 16
LS Contribution 281.56 15.07 4.24 4.24
Total: -1.00 -31.75 281.56 -6.09 -37.85
By element:
Atomic # 1 Polarization: 8.37 SS G_CDS: -4.46 Total: 3.91 kcal
Atomic # 6 Polarization: -10.80 SS G_CDS: -1.51 Total: -12.32 kcal
Atomic # 7 Polarization: -46.88 SS G_CDS: -0.04 Total: -46.91 kcal
Atomic # 8 Polarization: -4.31 SS G_CDS: -0.19 Total: -4.50 kcal
Atomic # 14 Polarization: 21.88 SS G_CDS: -4.14 Total: 17.73 kcal
Total LS contribution 4.24 Total: 4.24 kcal
Total: -31.75 -6.09 -37.85 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308885005.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.139 kcal
(2) G-P(sol) polarization free energy of solvation -31.753 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.386 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.094 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.292 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds