Wall clock time and date at job start Mon Mar 30 2020 03:44:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09000 * 109.47261 * 2 1
4 4 C 1.50702 * 109.47093 * 119.99595 * 2 1 3
5 5 H 1.07990 * 120.00179 * 120.00158 * 4 2 1
6 6 C 1.37882 * 119.99949 * 300.00418 * 4 2 1
7 7 N 1.31516 * 119.99896 * 180.02562 * 6 4 2
8 8 Si 1.86801 * 119.99963 * 359.97438 * 6 4 2
9 9 H 1.48497 * 109.47158 * 90.00196 * 8 6 4
10 10 H 1.48504 * 109.46879 * 210.00386 * 8 6 4
11 11 H 1.48503 * 109.47008 * 329.99698 * 8 6 4
12 12 N 1.46895 * 109.47616 * 239.99671 * 2 1 3
13 13 C 1.46907 * 111.00010 * 84.99724 * 12 2 1
14 14 C 1.52994 * 109.47118 * 180.02562 * 13 12 2
15 15 O 1.42894 * 109.47573 * 64.99943 * 14 13 12
16 16 C 1.35910 * 117.00621 * 180.02562 * 15 14 13
17 17 C 1.39138 * 120.47706 * 180.24394 * 16 15 14
18 18 C 1.38535 * 118.37336 * 180.24194 * 17 16 15
19 19 C 1.38262 * 119.22035 * 359.47237 * 18 17 16
20 20 N 1.31844 * 120.88422 * 0.30388 * 19 18 17
21 21 C 1.31834 * 121.78446 * 359.97438 * 20 19 18
22 22 H 1.09003 * 109.47603 * 300.00145 * 1 2 3
23 23 H 1.09004 * 109.47356 * 60.00122 * 1 2 3
24 24 H 1.09000 * 109.47261 * 180.02562 * 1 2 3
25 25 H 0.96998 * 119.99887 * 179.97438 * 7 6 4
26 26 H 1.00905 * 110.99791 * 321.05001 * 12 2 1
27 27 H 1.08995 * 109.46465 * 60.00514 * 13 12 2
28 28 H 1.09000 * 109.46993 * 300.00605 * 13 12 2
29 29 H 1.09002 * 109.46851 * 304.99977 * 14 13 12
30 30 H 1.08998 * 109.47422 * 185.00640 * 14 13 12
31 31 H 1.07999 * 120.81005 * 0.02562 * 17 16 15
32 32 H 1.08002 * 120.39207 * 179.75678 * 18 17 16
33 33 H 1.08000 * 119.55595 * 180.28266 * 19 18 17
34 34 H 1.07997 * 119.66066 * 179.97438 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7103 1.2305
5 1 2.6532 -1.5883 1.1315
6 6 1.6991 -0.2392 2.4828
7 7 2.1379 -0.8588 3.5567
8 14 0.6257 1.2799 2.6541
9 1 -0.8022 0.8746 2.6992
10 1 0.9770 1.9956 3.9070
11 1 0.8491 2.1774 1.4922
12 7 2.0197 -0.6925 -1.1993
13 6 2.0825 0.2225 -2.3469
14 6 2.5952 -0.5333 -3.5743
15 8 1.6496 -1.5388 -3.9440
16 6 1.9552 -2.3066 -5.0230
17 6 1.0835 -3.3037 -5.4492
18 6 1.4408 -4.0638 -6.5509
19 6 2.6372 -3.8016 -7.1925
20 7 3.4388 -2.8458 -6.7656
21 6 3.1383 -2.1038 -5.7181
22 1 -0.3634 0.5139 0.8900
23 1 -0.3634 0.5138 -0.8900
24 1 -0.3634 -1.0277 0.0005
25 1 1.9038 -0.5272 4.4376
26 1 1.4496 -1.4980 -1.4099
27 1 2.7589 1.0461 -2.1182
28 1 1.0871 0.6162 -2.5525
29 1 3.5508 -1.0020 -3.3394
30 1 2.7263 0.1640 -4.4018
31 1 0.1527 -3.4831 -4.9317
32 1 0.7904 -4.8489 -6.9073
33 1 2.9190 -4.3878 -8.0547
34 1 3.8205 -1.3302 -5.3978
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308885005.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:44:00
Heat of formation + Delta-G solvation = -19.743377 kcal
Electronic energy + Delta-G solvation = -16070.193852 eV
Core-core repulsion = 13388.739414 eV
Total energy + Delta-G solvation = -2681.454438 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.53062 -39.33914 -37.81857 -34.68298 -33.40011 -32.40223 -30.98843 -28.67331
-27.12172 -24.96003 -24.15081 -22.71126 -22.07619 -19.28536 -18.82769 -17.66251
-17.53552 -17.25435 -16.80381 -16.00841 -15.53318 -15.30280 -14.90213 -14.69471
-14.43664 -14.18248 -13.96394 -13.60436 -13.33022 -13.14027 -12.85076 -12.68303
-12.20969 -12.08681 -11.99452 -11.44856 -11.18122 -10.75172 -10.65664 -10.42874
-9.42627 -9.06399 -8.26688 -6.29658 0.16408 0.32259 1.30836 1.35980
1.46599 2.14569 2.32833 2.84361 3.07437 3.41548 3.57522 3.70758
3.92185 4.07010 4.18630 4.23967 4.34354 4.41896 4.48193 4.57576
4.64729 4.67489 4.81414 4.82661 5.00421 5.05767 5.16388 5.37754
5.61113 5.66730 6.00073 6.27352 6.67398 6.70210 6.77896 6.98052
7.35464 8.90942
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.052617 B = 0.004437 C = 0.004414
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 532.020351 B = 6309.033767 C = 6342.186165
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.185 3.815
3 H 0.035 0.965
4 C -0.506 4.506
5 H 0.032 0.968
6 C 0.007 3.993
7 N -0.952 5.952
8 Si 0.955 3.045
9 H -0.268 1.268
10 H -0.299 1.299
11 H -0.246 1.246
12 N -0.686 5.686
13 C 0.058 3.942
14 C 0.064 3.936
15 O -0.322 6.322
16 C 0.070 3.930
17 C -0.125 4.125
18 C -0.122 4.122
19 C 0.046 3.954
20 N -0.478 5.478
21 C 0.000 4.000
22 H 0.037 0.963
23 H 0.060 0.940
24 H 0.051 0.949
25 H 0.265 0.735
26 H 0.338 0.662
27 H 0.097 0.903
28 H 0.040 0.960
29 H 0.070 0.930
30 H 0.093 0.907
31 H 0.152 0.848
32 H 0.176 0.824
33 H 0.184 0.816
34 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.711 -0.989 -21.572 21.911
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C 0.076 3.924
3 H 0.053 0.947
4 C -0.545 4.545
5 H 0.051 0.949
6 C -0.189 4.189
7 N -0.593 5.593
8 Si 0.782 3.218
9 H -0.195 1.195
10 H -0.227 1.227
11 H -0.170 1.170
12 N -0.316 5.316
13 C -0.071 4.071
14 C -0.011 4.011
15 O -0.235 6.235
16 C 0.023 3.977
17 C -0.151 4.151
18 C -0.142 4.142
19 C -0.112 4.112
20 N -0.188 5.188
21 C -0.157 4.157
22 H 0.055 0.945
23 H 0.079 0.921
24 H 0.070 0.930
25 H 0.074 0.926
26 H 0.155 0.845
27 H 0.115 0.885
28 H 0.058 0.942
29 H 0.089 0.911
30 H 0.111 0.889
31 H 0.169 0.831
32 H 0.194 0.806
33 H 0.201 0.799
34 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges -2.416 -0.728 -21.530 21.677
hybrid contribution -1.760 0.420 1.057 2.095
sum -4.176 -0.308 -20.473 20.897
Atomic orbital electron populations
1.22707 0.99526 1.01253 0.99971 1.19441 0.89997 0.94340 0.88657
0.94731 1.21289 1.30321 1.12540 0.90339 0.94928 1.25852 0.97580
1.00217 0.95299 1.70055 1.48013 1.42701 0.98570 0.85766 0.78848
0.79807 0.77353 1.19457 1.22676 1.17024 1.60518 1.58236 1.09674
1.03194 1.22118 1.00746 0.95391 0.88823 1.23045 0.91875 0.89194
0.96991 1.86056 1.47416 1.46544 1.43460 1.20321 0.95598 0.93282
0.88542 1.21337 1.00622 0.94730 0.98429 1.22393 0.98033 0.99603
0.94133 1.23217 0.91520 0.95513 1.00958 1.67529 1.33418 1.05553
1.12295 1.23091 0.96062 1.01934 0.94579 0.94483 0.92127 0.93004
0.92600 0.84474 0.88508 0.94199 0.91139 0.88893 0.83064 0.80647
0.79863 0.81770
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -7.15 8.64 71.98 0.62 -6.53 16
2 C 0.19 8.47 2.16 44.17 0.10 8.57 16
3 H 0.03 1.59 6.86 -2.39 -0.02 1.57 16
4 C -0.51 -29.26 9.42 25.60 0.24 -29.02 16
5 H 0.03 2.14 8.06 -2.92 -0.02 2.11 16
6 C 0.01 0.41 5.45 84.66 0.46 0.87 16
7 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16
8 Si 0.96 44.67 24.37 68.60 1.67 46.34 16
9 H -0.27 -11.95 6.87 99.48 0.68 -11.27 16
10 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16
11 H -0.25 -10.50 6.53 99.48 0.65 -9.85 16
12 N -0.69 -27.10 6.23 -495.46 -3.09 -30.19 16
13 C 0.06 1.72 5.90 86.30 0.51 2.23 16
14 C 0.06 1.56 5.09 71.98 0.37 1.93 16
15 O -0.32 -8.78 9.67 -92.53 -0.89 -9.68 16
16 C 0.07 1.75 6.71 22.60 0.15 1.90 16
17 C -0.12 -2.58 10.13 22.56 0.23 -2.35 16
18 C -0.12 -1.94 10.11 22.35 0.23 -1.71 16
19 C 0.05 0.83 11.18 84.70 0.95 1.77 16
20 N -0.48 -11.53 10.35 -195.44 -2.02 -13.55 16
21 C 0.00 0.01 10.22 84.81 0.87 0.88 16
22 H 0.04 1.56 3.27 -2.39 -0.01 1.55 16
23 H 0.06 2.05 7.45 -2.39 -0.02 2.03 16
24 H 0.05 2.11 8.13 -2.39 -0.02 2.09 16
25 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16
26 H 0.34 13.27 8.03 -89.69 -0.72 12.55 16
27 H 0.10 2.69 8.05 -2.39 -0.02 2.67 16
28 H 0.04 1.12 7.44 -2.39 -0.02 1.10 16
29 H 0.07 1.79 7.68 -2.39 -0.02 1.77 16
30 H 0.09 1.71 7.68 -2.39 -0.02 1.69 16
31 H 0.15 2.73 8.06 -2.91 -0.02 2.70 16
32 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16
33 H 0.18 2.07 8.06 -2.91 -0.02 2.04 16
34 H 0.17 3.48 6.32 -2.91 -0.02 3.46 16
Total: -1.00 -70.25 281.56 0.98 -69.27
By element:
Atomic # 1 Polarization: 18.95 SS G_CDS: 0.30 Total: 19.26 kcal
Atomic # 6 Polarization: -26.17 SS G_CDS: 4.72 Total: -21.46 kcal
Atomic # 7 Polarization: -98.92 SS G_CDS: -4.81 Total: -103.73 kcal
Atomic # 8 Polarization: -8.78 SS G_CDS: -0.89 Total: -9.68 kcal
Atomic # 14 Polarization: 44.67 SS G_CDS: 1.67 Total: 46.34 kcal
Total: -70.25 0.98 -69.27 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308885005.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.526 kcal
(2) G-P(sol) polarization free energy of solvation -70.252 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.725 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.982 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.270 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.743 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds