Wall clock time and date at job start Mon Mar 30 2020 03:45:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42900 * 113.99845 * 2 1
4 4 C 1.52999 * 109.46522 * 179.97438 * 3 2 1
5 5 H 1.09008 * 109.46892 * 184.99861 * 4 3 2
6 6 C 1.53000 * 109.47570 * 305.00069 * 4 3 2
7 7 N 1.46506 * 109.47231 * 65.00491 * 4 3 2
8 8 C 1.39243 * 119.99898 * 154.99937 * 7 4 3
9 9 C 1.39709 * 120.78585 * 359.97438 * 8 7 4
10 10 C 1.38453 * 119.47361 * 180.02562 * 9 8 7
11 11 N 1.31537 * 121.10386 * 0.02562 * 10 9 8
12 12 C 1.33696 * 121.70319 * 0.02562 * 11 10 9
13 13 C 1.41448 * 119.79811 * 179.97438 * 12 11 10
14 14 H 1.08007 * 120.00333 * 187.07392 * 13 12 11
15 15 C 1.40007 * 120.00341 * 7.07543 * 13 12 11
16 16 N 1.30742 * 120.00611 * 182.54825 * 15 13 12
17 17 Si 1.86805 * 119.99728 * 2.54021 * 15 13 12
18 18 H 1.48500 * 109.46971 * 180.02562 * 17 15 13
19 19 H 1.48504 * 109.47204 * 300.00376 * 17 15 13
20 20 H 1.48504 * 109.46850 * 60.00368 * 17 15 13
21 21 C 1.39025 * 120.77999 * 180.29688 * 8 7 4
22 22 H 1.09002 * 109.47007 * 300.00119 * 1 2 3
23 23 H 1.09003 * 109.46669 * 59.99758 * 1 2 3
24 24 H 1.08998 * 109.47478 * 179.97438 * 1 2 3
25 25 H 1.08995 * 109.47242 * 60.00259 * 3 2 1
26 26 H 1.08999 * 109.47340 * 299.99820 * 3 2 1
27 27 H 1.09003 * 109.47361 * 180.02562 * 6 4 3
28 28 H 1.09004 * 109.46649 * 300.00381 * 6 4 3
29 29 H 1.08995 * 109.47115 * 59.99827 * 6 4 3
30 30 H 0.96994 * 119.99324 * 334.99509 * 7 4 3
31 31 H 1.07998 * 120.26358 * 0.04838 * 9 8 7
32 32 H 1.07998 * 119.45209 * 180.02562 * 10 9 8
33 33 H 0.97010 * 119.99796 * 354.84253 * 16 15 13
34 34 H 1.08003 * 120.56317 * 359.97438 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1845 0.0006
5 1 3.9785 2.1765 0.0902
6 6 3.9781 0.3197 1.1826
7 7 3.9767 0.5639 -1.2510
8 6 5.2621 0.8015 -1.7305
9 6 6.1444 1.6292 -1.0318
10 6 7.4162 1.8472 -1.5337
11 7 7.8079 1.2883 -2.6581
12 6 7.0011 0.4894 -3.3640
13 6 7.4639 -0.0902 -4.5685
14 1 6.7824 -0.6417 -5.1992
15 6 8.8056 0.0509 -4.9430
16 7 9.2223 -0.4418 -6.0801
17 14 10.0003 0.9436 -3.8182
18 1 11.3490 0.9574 -4.4396
19 1 9.5368 2.3392 -3.6112
20 1 10.0648 0.2442 -2.5097
21 6 5.6956 0.2259 -2.9195
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3634 -1.0276 -0.0005
25 1 1.6886 1.8464 0.8900
26 1 1.6886 1.8464 -0.8900
27 1 5.0647 0.2339 1.1833
28 1 3.6497 0.7815 2.1137
29 1 3.5350 -0.6722 1.0930
30 1 3.3733 -0.0125 -1.7454
31 1 5.8370 2.0951 -0.1072
32 1 8.0981 2.4868 -0.9931
33 1 8.6214 -0.9694 -6.6293
34 1 5.0404 -0.4159 -3.4898
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308909388.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:45:32
Heat of formation + Delta-G solvation = -32.888158 kcal
Electronic energy + Delta-G solvation = -16383.094487 eV
Core-core repulsion = 13701.070048 eV
Total energy + Delta-G solvation = -2682.024439 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.00902 -38.12617 -35.88358 -33.55934 -31.79460 -30.23596 -28.13667 -27.45692
-25.73435 -25.36035 -21.95034 -21.60809 -19.88782 -18.34406 -16.80863 -16.33858
-16.13721 -15.52701 -14.78840 -14.49420 -14.22683 -13.72004 -13.43277 -12.96225
-12.68816 -12.46686 -12.42088 -11.98684 -11.88950 -11.82936 -11.36333 -10.88702
-10.65253 -10.41529 -10.06884 -9.86986 -9.71630 -9.46971 -9.17503 -7.86573
-7.55631 -7.11400 -6.92238 -4.69175 2.69541 2.92183 3.58781 3.72239
3.81213 3.96166 4.14528 4.57879 4.76954 4.80029 5.02061 5.09205
5.16537 5.24577 5.41138 5.47158 5.62625 5.71897 5.78330 5.86665
6.07737 6.24532 6.41613 6.49423 6.71514 6.90008 6.95539 7.26225
7.37685 7.41896 7.56273 8.12530 8.19519 8.34005 8.55512 8.79166
9.66850 10.12156
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.046870 B = 0.005629 C = 0.005167
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 597.248741 B = 4972.867646 C = 5417.279019
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.385 6.385
3 C 0.053 3.947
4 C 0.158 3.842
5 H 0.089 0.911
6 C -0.163 4.163
7 N -0.743 5.743
8 C 0.271 3.729
9 C -0.368 4.368
10 C 0.176 3.824
11 N -0.596 5.596
12 C 0.278 3.722
13 C -0.478 4.478
14 H 0.078 0.922
15 C 0.044 3.956
16 N -0.811 5.811
17 Si 1.159 2.841
18 H -0.337 1.337
19 H -0.280 1.280
20 H -0.295 1.295
21 C -0.337 4.337
22 H 0.039 0.961
23 H 0.040 0.960
24 H 0.084 0.916
25 H 0.058 0.942
26 H 0.054 0.946
27 H 0.062 0.938
28 H 0.053 0.947
29 H 0.062 0.938
30 H 0.396 0.604
31 H 0.102 0.898
32 H 0.126 0.874
33 H 0.281 0.719
34 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.233 3.063 11.756 17.964
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.304 6.304
3 C -0.024 4.024
4 C 0.051 3.949
5 H 0.107 0.893
6 C -0.221 4.221
7 N -0.374 5.374
8 C 0.164 3.836
9 C -0.396 4.396
10 C 0.014 3.986
11 N -0.317 5.317
12 C 0.155 3.845
13 C -0.510 4.510
14 H 0.096 0.904
15 C -0.176 4.176
16 N -0.433 5.433
17 Si 0.995 3.005
18 H -0.271 1.271
19 H -0.207 1.207
20 H -0.223 1.223
21 C -0.363 4.363
22 H 0.058 0.942
23 H 0.058 0.942
24 H 0.103 0.897
25 H 0.076 0.924
26 H 0.072 0.928
27 H 0.081 0.919
28 H 0.072 0.928
29 H 0.081 0.919
30 H 0.230 0.770
31 H 0.120 0.880
32 H 0.143 0.857
33 H 0.092 0.908
34 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -10.851 3.564 11.554 16.246
hybrid contribution -3.263 -0.838 -0.064 3.370
sum -14.114 2.726 11.489 18.402
Atomic orbital electron populations
1.22731 0.81332 1.02674 0.99795 1.87925 1.19366 1.27718 1.95347
1.22901 0.93921 0.84996 1.00578 1.20825 0.90738 0.97610 0.85691
0.89340 1.22180 1.02193 1.00977 0.96782 1.44438 1.13092 1.55098
1.24797 1.17735 0.83502 0.90918 0.91417 1.20713 0.97533 1.15387
1.05963 1.21872 0.92691 0.93344 0.90680 1.66471 1.36505 1.18152
1.10573 1.18361 0.87801 0.86950 0.91342 1.20730 0.97173 1.29208
1.03859 0.90435 1.27837 0.99299 0.94080 0.96413 1.70667 1.40730
1.23092 1.08807 0.81736 0.69285 0.77722 0.71780 1.27107 1.20746
1.22296 1.20985 0.99789 1.15038 1.00535 0.94246 0.94166 0.89713
0.92379 0.92767 0.91915 0.92839 0.91859 0.77002 0.87990 0.85692
0.90833 0.88297
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.27 11.01 101.05 1.11 1.38 16
2 O -0.38 -4.60 9.55 -35.23 -0.34 -4.93 16
3 C 0.05 0.59 5.68 37.16 0.21 0.80 16
4 C 0.16 2.14 2.69 -67.93 -0.18 1.96 16
5 H 0.09 1.19 6.54 -51.92 -0.34 0.85 16
6 C -0.16 -2.14 9.27 37.16 0.34 -1.80 16
7 N -0.74 -12.64 5.22 -52.03 -0.27 -12.91 16
8 C 0.27 5.75 6.67 -83.65 -0.56 5.19 16
9 C -0.37 -7.61 8.97 -38.95 -0.35 -7.96 16
10 C 0.18 3.97 11.17 -17.60 -0.20 3.77 16
11 N -0.60 -15.62 4.55 -11.21 -0.05 -15.67 16
12 C 0.28 7.55 6.39 -85.02 -0.54 7.01 16
13 C -0.48 -13.64 9.58 -37.70 -0.36 -14.00 16
14 H 0.08 2.22 8.05 -52.48 -0.42 1.79 16
15 C 0.04 1.25 5.52 -17.35 -0.10 1.15 16
16 N -0.81 -22.96 13.65 55.55 0.76 -22.20 16
17 Si 1.16 29.57 25.56 -169.99 -4.34 25.23 16
18 H -0.34 -8.47 7.11 56.52 0.40 -8.07 16
19 H -0.28 -7.07 6.67 56.52 0.38 -6.70 16
20 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16
21 C -0.34 -8.23 9.72 -38.47 -0.37 -8.60 16
22 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16
23 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16
24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
27 H 0.06 0.93 7.81 -51.93 -0.41 0.52 16
28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16
29 H 0.06 0.89 7.56 -51.93 -0.39 0.50 16
30 H 0.40 6.55 8.41 -40.82 -0.34 6.21 16
31 H 0.10 1.81 6.33 -52.49 -0.33 1.48 16
32 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16
33 H 0.28 7.61 8.72 -40.82 -0.36 7.25 16
34 H 0.10 2.34 8.06 -52.48 -0.42 1.91 16
LS Contribution 284.47 15.07 4.29 4.29
Total: -1.00 -30.61 284.47 -5.75 -36.35
By element:
Atomic # 1 Polarization: 5.75 SS G_CDS: -4.79 Total: 0.96 kcal
Atomic # 6 Polarization: -10.11 SS G_CDS: -0.99 Total: -11.11 kcal
Atomic # 7 Polarization: -51.22 SS G_CDS: 0.44 Total: -50.78 kcal
Atomic # 8 Polarization: -4.60 SS G_CDS: -0.34 Total: -4.93 kcal
Atomic # 14 Polarization: 29.57 SS G_CDS: -4.34 Total: 25.23 kcal
Total LS contribution 4.29 Total: 4.29 kcal
Total: -30.61 -5.75 -36.35 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308909388.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.464 kcal
(2) G-P(sol) polarization free energy of solvation -30.607 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.143 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.745 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.352 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.888 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds