Wall clock time and date at job start Mon Mar 30 2020 03:45:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42900 * 113.99845 * 2 1
4 4 C 1.52999 * 109.46522 * 179.97438 * 3 2 1
5 5 H 1.09008 * 109.46892 * 184.99861 * 4 3 2
6 6 C 1.53000 * 109.47570 * 305.00069 * 4 3 2
7 7 N 1.46506 * 109.47231 * 65.00491 * 4 3 2
8 8 C 1.39243 * 119.99898 * 154.99937 * 7 4 3
9 9 C 1.39709 * 120.78585 * 359.97438 * 8 7 4
10 10 C 1.38453 * 119.47361 * 180.02562 * 9 8 7
11 11 N 1.31537 * 121.10386 * 0.02562 * 10 9 8
12 12 C 1.33696 * 121.70319 * 0.02562 * 11 10 9
13 13 C 1.41448 * 119.79811 * 179.97438 * 12 11 10
14 14 H 1.08007 * 120.00333 * 187.07392 * 13 12 11
15 15 C 1.40007 * 120.00341 * 7.07543 * 13 12 11
16 16 N 1.30742 * 120.00611 * 182.54825 * 15 13 12
17 17 Si 1.86805 * 119.99728 * 2.54021 * 15 13 12
18 18 H 1.48500 * 109.46971 * 180.02562 * 17 15 13
19 19 H 1.48504 * 109.47204 * 300.00376 * 17 15 13
20 20 H 1.48504 * 109.46850 * 60.00368 * 17 15 13
21 21 C 1.39025 * 120.77999 * 180.29688 * 8 7 4
22 22 H 1.09002 * 109.47007 * 300.00119 * 1 2 3
23 23 H 1.09003 * 109.46669 * 59.99758 * 1 2 3
24 24 H 1.08998 * 109.47478 * 179.97438 * 1 2 3
25 25 H 1.08995 * 109.47242 * 60.00259 * 3 2 1
26 26 H 1.08999 * 109.47340 * 299.99820 * 3 2 1
27 27 H 1.09003 * 109.47361 * 180.02562 * 6 4 3
28 28 H 1.09004 * 109.46649 * 300.00381 * 6 4 3
29 29 H 1.08995 * 109.47115 * 59.99827 * 6 4 3
30 30 H 0.96994 * 119.99324 * 334.99509 * 7 4 3
31 31 H 1.07998 * 120.26358 * 0.04838 * 9 8 7
32 32 H 1.07998 * 119.45209 * 180.02562 * 10 9 8
33 33 H 0.97010 * 119.99796 * 354.84253 * 16 15 13
34 34 H 1.08003 * 120.56317 * 359.97438 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1845 0.0006
5 1 3.9785 2.1765 0.0902
6 6 3.9781 0.3197 1.1826
7 7 3.9767 0.5639 -1.2510
8 6 5.2621 0.8015 -1.7305
9 6 6.1444 1.6292 -1.0318
10 6 7.4162 1.8472 -1.5337
11 7 7.8079 1.2883 -2.6581
12 6 7.0011 0.4894 -3.3640
13 6 7.4639 -0.0902 -4.5685
14 1 6.7824 -0.6417 -5.1992
15 6 8.8056 0.0509 -4.9430
16 7 9.2223 -0.4418 -6.0801
17 14 10.0003 0.9436 -3.8182
18 1 11.3490 0.9574 -4.4396
19 1 9.5368 2.3392 -3.6112
20 1 10.0648 0.2442 -2.5097
21 6 5.6956 0.2259 -2.9195
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3634 -1.0276 -0.0005
25 1 1.6886 1.8464 0.8900
26 1 1.6886 1.8464 -0.8900
27 1 5.0647 0.2339 1.1833
28 1 3.6497 0.7815 2.1137
29 1 3.5350 -0.6722 1.0930
30 1 3.3733 -0.0125 -1.7454
31 1 5.8370 2.0951 -0.1072
32 1 8.0981 2.4868 -0.9931
33 1 8.6214 -0.9694 -6.6293
34 1 5.0404 -0.4159 -3.4898
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308909388.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:45:32
Heat of formation + Delta-G solvation = -53.761796 kcal
Electronic energy + Delta-G solvation = -16383.999636 eV
Core-core repulsion = 13701.070048 eV
Total energy + Delta-G solvation = -2682.929588 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.62169 -39.26801 -37.22927 -35.54678 -33.21445 -32.15084 -29.69887 -28.27635
-27.32075 -26.54119 -23.72862 -23.13723 -21.37719 -20.28342 -18.13338 -17.66292
-17.18631 -16.75689 -16.25776 -16.05073 -15.83485 -15.14482 -14.81663 -14.56910
-14.37025 -14.07396 -13.92270 -13.69163 -13.02533 -12.84490 -12.60753 -12.29849
-12.09415 -12.00058 -11.83214 -11.53177 -11.34688 -11.21600 -10.64020 -9.80735
-9.55980 -9.16086 -8.51835 -6.79089 0.79818 1.08460 1.66769 1.81427
2.13436 2.51364 2.57994 2.75456 2.87774 3.70095 3.84730 4.07263
4.12563 4.30532 4.45591 4.48436 4.54288 4.58877 4.63829 4.71365
4.82558 4.86190 4.94451 4.97332 5.15849 5.40485 5.42218 5.52550
5.53719 5.65565 6.07874 6.18572 6.31809 6.66930 6.75909 6.92220
7.75006 8.01976
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.046870 B = 0.005629 C = 0.005167
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 597.248741 B = 4972.867646 C = 5417.279019
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.410 6.410
3 C 0.058 3.942
4 C 0.149 3.851
5 H 0.099 0.901
6 C -0.156 4.156
7 N -0.732 5.732
8 C 0.281 3.719
9 C -0.345 4.345
10 C 0.160 3.840
11 N -0.621 5.621
12 C 0.265 3.735
13 C -0.520 4.520
14 H 0.055 0.945
15 C 0.015 3.985
16 N -0.839 5.839
17 Si 1.196 2.804
18 H -0.335 1.335
19 H -0.276 1.276
20 H -0.296 1.296
21 C -0.360 4.360
22 H 0.056 0.944
23 H 0.044 0.956
24 H 0.091 0.909
25 H 0.088 0.912
26 H 0.055 0.945
27 H 0.045 0.955
28 H 0.083 0.917
29 H 0.050 0.950
30 H 0.398 0.602
31 H 0.143 0.857
32 H 0.164 0.836
33 H 0.276 0.724
34 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.886 4.735 15.036 21.681
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.330 6.330
3 C -0.019 4.019
4 C 0.044 3.956
5 H 0.117 0.883
6 C -0.215 4.215
7 N -0.362 5.362
8 C 0.171 3.829
9 C -0.373 4.373
10 C 0.000 4.000
11 N -0.343 5.343
12 C 0.142 3.858
13 C -0.552 4.552
14 H 0.073 0.927
15 C -0.200 4.200
16 N -0.462 5.462
17 Si 1.029 2.971
18 H -0.270 1.270
19 H -0.203 1.203
20 H -0.225 1.225
21 C -0.387 4.387
22 H 0.075 0.925
23 H 0.063 0.937
24 H 0.109 0.891
25 H 0.106 0.894
26 H 0.073 0.927
27 H 0.064 0.936
28 H 0.102 0.898
29 H 0.069 0.931
30 H 0.232 0.768
31 H 0.160 0.840
32 H 0.181 0.819
33 H 0.087 0.913
34 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -12.562 5.244 14.873 20.162
hybrid contribution -3.051 -1.306 -0.808 3.416
sum -15.613 3.938 14.066 21.381
Atomic orbital electron populations
1.22896 0.79627 1.03564 1.00865 1.87886 1.21267 1.28257 1.95585
1.22861 0.91881 0.85087 1.02101 1.21171 0.92890 0.97690 0.83831
0.88290 1.22106 1.00877 1.00580 0.97920 1.44642 1.11370 1.54372
1.25786 1.17818 0.85242 0.89723 0.90150 1.21157 0.96383 1.13285
1.06433 1.22594 0.94300 0.93236 0.89849 1.66402 1.36996 1.18806
1.12125 1.18453 0.89035 0.87149 0.91198 1.20697 0.97387 1.31692
1.05431 0.92692 1.28627 1.00214 0.94247 0.96888 1.70691 1.40774
1.25110 1.09670 0.81244 0.68161 0.77144 0.70536 1.26951 1.20325
1.22494 1.21041 0.99212 1.16147 1.02255 0.92524 0.93687 0.89072
0.89399 0.92663 0.93623 0.89836 0.93068 0.76780 0.83973 0.81877
0.91306 0.88828
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.37 11.01 113.37 1.25 1.62 16
2 O -0.41 -8.51 9.55 -148.98 -1.42 -9.93 16
3 C 0.06 1.04 5.68 71.98 0.41 1.45 16
4 C 0.15 3.41 2.69 44.99 0.12 3.53 16
5 H 0.10 2.12 6.54 -2.38 -0.02 2.10 16
6 C -0.16 -3.49 9.27 71.98 0.67 -2.82 16
7 N -0.73 -22.88 5.22 -318.53 -1.66 -24.55 16
8 C 0.28 11.27 6.67 38.51 0.26 11.53 16
9 C -0.35 -12.92 8.97 22.68 0.20 -12.72 16
10 C 0.16 6.68 11.17 84.79 0.95 7.63 16
11 N -0.62 -31.94 4.55 -189.37 -0.86 -32.80 16
12 C 0.27 14.62 6.39 40.18 0.26 14.88 16
13 C -0.52 -31.02 9.58 23.49 0.23 -30.80 16
14 H 0.05 3.38 8.05 -2.91 -0.02 3.35 16
15 C 0.02 0.89 5.52 85.28 0.47 1.36 16
16 N -0.84 -49.52 13.65 21.83 0.30 -49.22 16
17 Si 1.20 60.79 25.56 68.60 1.75 62.54 16
18 H -0.34 -16.64 7.11 99.48 0.71 -15.93 16
19 H -0.28 -13.63 6.67 99.48 0.66 -12.97 16
20 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16
21 C -0.36 -17.62 9.72 22.99 0.22 -17.39 16
22 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16
23 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16
24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16
25 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16
26 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
27 H 0.04 1.17 7.81 -2.39 -0.02 1.15 16
28 H 0.08 1.38 8.14 -2.38 -0.02 1.37 16
29 H 0.05 1.28 7.56 -2.39 -0.02 1.26 16
30 H 0.40 12.38 8.41 -92.71 -0.78 11.60 16
31 H 0.14 4.19 6.33 -2.91 -0.02 4.17 16
32 H 0.16 5.48 8.06 -2.91 -0.02 5.46 16
33 H 0.28 15.88 8.72 -92.70 -0.81 15.08 16
34 H 0.09 4.55 8.06 -2.91 -0.02 4.53 16
Total: -1.00 -67.80 284.47 3.36 -64.44
By element:
Atomic # 1 Polarization: 11.03 SS G_CDS: 0.23 Total: 11.26 kcal
Atomic # 6 Polarization: -26.77 SS G_CDS: 5.03 Total: -21.74 kcal
Atomic # 7 Polarization: -104.34 SS G_CDS: -2.23 Total: -106.56 kcal
Atomic # 8 Polarization: -8.51 SS G_CDS: -1.42 Total: -9.93 kcal
Atomic # 14 Polarization: 60.79 SS G_CDS: 1.75 Total: 62.54 kcal
Total: -67.80 3.36 -64.44 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308909388.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.677 kcal
(2) G-P(sol) polarization free energy of solvation -67.802 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.125 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.439 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.762 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds