Wall clock time and date at job start Mon Mar 30 2020 03:45:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42893 * 1
3 3 C 1.42902 * 114.00290 * 2 1
4 4 C 1.53004 * 109.47086 * 179.97438 * 3 2 1
5 5 H 1.08997 * 109.46747 * 174.99972 * 4 3 2
6 6 C 1.53005 * 109.46856 * 55.00567 * 4 3 2
7 7 N 1.46491 * 109.47148 * 295.00267 * 4 3 2
8 8 C 1.39248 * 119.99881 * 204.99828 * 7 4 3
9 9 C 1.39714 * 120.78469 * 0.02562 * 8 7 4
10 10 C 1.38448 * 119.47466 * 180.02562 * 9 8 7
11 11 N 1.31529 * 121.10447 * 359.97438 * 10 9 8
12 12 C 1.33693 * 121.70573 * 0.02562 * 11 10 9
13 13 C 1.41458 * 119.80099 * 180.02562 * 12 11 10
14 14 H 1.07996 * 119.99680 * 187.18837 * 13 12 11
15 15 C 1.40006 * 119.99852 * 7.18983 * 13 12 11
16 16 N 1.30747 * 120.00052 * 7.22166 * 15 13 12
17 17 Si 1.86800 * 120.00059 * 187.22516 * 15 13 12
18 18 H 1.48500 * 109.46869 * 265.16954 * 17 15 13
19 19 H 1.48502 * 109.46790 * 25.16519 * 17 15 13
20 20 H 1.48503 * 109.47204 * 145.16702 * 17 15 13
21 21 C 1.39029 * 120.78537 * 180.29814 * 8 7 4
22 22 H 1.09006 * 109.46772 * 300.00007 * 1 2 3
23 23 H 1.09005 * 109.47034 * 59.99337 * 1 2 3
24 24 H 1.08998 * 109.47416 * 179.97438 * 1 2 3
25 25 H 1.08998 * 109.46951 * 60.00470 * 3 2 1
26 26 H 1.09002 * 109.47228 * 299.99951 * 3 2 1
27 27 H 1.09003 * 109.46854 * 179.97438 * 6 4 3
28 28 H 1.08997 * 109.46957 * 299.99276 * 6 4 3
29 29 H 1.08995 * 109.47072 * 59.99852 * 6 4 3
30 30 H 0.96997 * 120.00308 * 25.00179 * 7 4 3
31 31 H 1.08006 * 120.26212 * 0.03309 * 9 8 7
32 32 H 1.07998 * 119.44640 * 179.97438 * 10 9 8
33 33 H 0.97007 * 120.00287 * 180.02562 * 16 15 13
34 34 H 1.07999 * 120.55734 * 359.97438 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5355 1.1845 0.0006
5 1 3.9785 2.1764 -0.0889
6 6 3.9790 0.3193 -1.1808
7 7 3.9756 0.5643 1.2526
8 6 5.2608 0.8020 1.7332
9 6 6.1436 1.6296 1.0349
10 6 7.4154 1.8468 1.5373
11 7 7.8065 1.2874 2.6616
12 6 6.9996 0.4878 3.3665
13 6 7.4619 -0.0923 4.5710
14 1 6.8587 -0.8279 5.0823
15 6 8.7013 0.2871 5.1001
16 7 9.3669 1.2755 4.5621
17 14 9.4042 -0.6190 6.5747
18 1 9.0454 0.1075 7.8192
19 1 8.8434 -1.9932 6.6246
20 1 10.8824 -0.6917 6.4526
21 6 5.6976 0.2168 2.9163
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5140 -0.8900
24 1 -0.3634 -1.0276 -0.0005
25 1 1.6887 1.8463 0.8900
26 1 1.6886 1.8464 -0.8900
27 1 5.0656 0.2336 -1.1806
28 1 3.5359 -0.6725 -1.0912
29 1 3.6514 0.7809 -2.1123
30 1 3.3719 -0.0120 1.7469
31 1 5.8364 2.0963 0.1106
32 1 8.0976 2.4863 0.9969
33 1 10.2258 1.5382 4.9285
34 1 5.0449 -0.4319 3.4817
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000308909391.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:45:34
Heat of formation + Delta-G solvation = -15.388763 kcal
Electronic energy + Delta-G solvation = -16279.456782 eV
Core-core repulsion = 13598.191174 eV
Total energy + Delta-G solvation = -2681.265608 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-38.72807 -37.81212 -35.59927 -33.32506 -31.42817 -29.76384 -27.70981 -27.33847
-25.63405 -25.48212 -21.74918 -21.33918 -19.87988 -17.63540 -16.54833 -16.06602
-15.78969 -15.40186 -14.72180 -14.41273 -14.02959 -13.47623 -13.26899 -12.98525
-12.62134 -12.21269 -12.06653 -11.82123 -11.77480 -11.26297 -11.10399 -11.06791
-10.73761 -10.54689 -10.32993 -9.78822 -9.68780 -9.63426 -9.04742 -7.50081
-7.37690 -6.58492 -6.32306 -4.39506 2.89086 3.15402 3.19154 3.25509
3.42482 3.71012 4.02903 4.18964 4.88387 4.92854 5.13371 5.18855
5.26739 5.35428 5.49998 5.60764 5.78994 5.96396 6.11934 6.21910
6.23120 6.52887 6.60652 6.79773 7.01577 7.05208 7.19740 7.30088
7.60672 7.71602 7.78357 8.35845 8.50239 8.61169 8.87644 9.11342
10.30582 10.46970
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.043696 B = 0.005177 C = 0.004758
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 640.635788 B = 5407.661991 C = 5883.019234
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.031 3.969
2 O -0.384 6.384
3 C 0.053 3.947
4 C 0.160 3.840
5 H 0.087 0.913
6 C -0.162 4.162
7 N -0.746 5.746
8 C 0.257 3.743
9 C -0.373 4.373
10 C 0.149 3.851
11 N -0.511 5.511
12 C 0.286 3.714
13 C -0.439 4.439
14 H 0.080 0.920
15 C 0.074 3.926
16 N -0.721 5.721
17 Si 0.904 3.096
18 H -0.271 1.271
19 H -0.262 1.262
20 H -0.276 1.276
21 C -0.346 4.346
22 H 0.039 0.961
23 H 0.038 0.962
24 H 0.084 0.916
25 H 0.053 0.947
26 H 0.056 0.944
27 H 0.062 0.938
28 H 0.061 0.939
29 H 0.050 0.950
30 H 0.393 0.607
31 H 0.092 0.908
32 H 0.115 0.885
33 H 0.271 0.729
34 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.596 0.146 -6.968 13.530
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.303 6.303
3 C -0.024 4.024
4 C 0.053 3.947
5 H 0.105 0.895
6 C -0.221 4.221
7 N -0.379 5.379
8 C 0.152 3.848
9 C -0.401 4.401
10 C -0.018 4.018
11 N -0.225 5.225
12 C 0.161 3.839
13 C -0.470 4.470
14 H 0.098 0.902
15 C -0.150 4.150
16 N -0.342 5.342
17 Si 0.728 3.272
18 H -0.196 1.196
19 H -0.186 1.186
20 H -0.201 1.201
21 C -0.372 4.372
22 H 0.058 0.942
23 H 0.057 0.943
24 H 0.102 0.898
25 H 0.072 0.928
26 H 0.075 0.925
27 H 0.081 0.919
28 H 0.080 0.920
29 H 0.069 0.931
30 H 0.227 0.773
31 H 0.110 0.890
32 H 0.132 0.868
33 H 0.082 0.918
34 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -10.448 0.345 -6.739 12.438
hybrid contribution -1.085 -0.462 0.404 1.247
sum -11.533 -0.117 -6.335 13.159
Atomic orbital electron populations
1.22721 0.81500 1.02576 0.99734 1.87926 1.19218 1.27820 1.95329
1.22919 0.94153 0.84877 1.00425 1.20756 0.90434 0.97591 0.85897
0.89524 1.22176 1.02204 1.00894 0.96790 1.44370 1.13357 1.55465
1.24663 1.17678 0.83423 0.91938 0.91798 1.20840 0.98277 1.15410
1.05574 1.22243 0.92125 0.94900 0.92526 1.68667 1.34997 1.12860
1.06004 1.18307 0.86508 0.87490 0.91558 1.19551 1.02099 1.20449
1.04910 0.90160 1.26020 0.96832 0.94390 0.97794 1.70098 1.10844
1.19509 1.33756 0.86392 0.78606 0.80848 0.81374 1.19640 1.18559
1.20112 1.21159 0.99864 1.15160 1.01068 0.94202 0.94339 0.89786
0.92827 0.92546 0.91942 0.91987 0.93073 0.77312 0.88997 0.86754
0.91756 0.88844
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.29 11.01 101.05 1.11 1.40 16
2 O -0.38 -4.93 9.55 -35.23 -0.34 -5.26 16
3 C 0.05 0.65 5.68 37.16 0.21 0.86 16
4 C 0.16 2.40 2.69 -67.93 -0.18 2.21 16
5 H 0.09 1.32 6.53 -51.93 -0.34 0.98 16
6 C -0.16 -2.34 9.27 37.16 0.34 -2.00 16
7 N -0.75 -13.78 5.22 -52.04 -0.27 -14.05 16
8 C 0.26 5.91 6.67 -83.65 -0.56 5.35 16
9 C -0.37 -8.56 8.97 -38.95 -0.35 -8.91 16
10 C 0.15 3.75 11.17 -17.60 -0.20 3.55 16
11 N -0.51 -14.64 7.97 -11.21 -0.09 -14.73 16
12 C 0.29 8.16 6.52 -85.02 -0.55 7.61 16
13 C -0.44 -12.27 9.13 -37.69 -0.34 -12.62 16
14 H 0.08 2.11 7.86 -52.49 -0.41 1.70 16
15 C 0.07 1.97 5.47 -17.35 -0.09 1.88 16
16 N -0.72 -19.88 11.57 55.55 0.64 -19.24 16
17 Si 0.90 19.21 29.57 -169.99 -5.03 14.19 16
18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16
19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16
20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16
21 C -0.35 -8.90 9.72 -38.47 -0.37 -9.27 16
22 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16
23 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16
24 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
26 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
27 H 0.06 1.02 7.82 -51.93 -0.41 0.61 16
28 H 0.06 0.94 7.56 -51.93 -0.39 0.54 16
29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
30 H 0.39 7.00 8.41 -40.82 -0.34 6.66 16
31 H 0.09 1.86 6.33 -52.48 -0.33 1.52 16
32 H 0.11 2.56 8.06 -52.49 -0.42 2.13 16
33 H 0.27 6.76 8.29 -40.82 -0.34 6.42 16
34 H 0.09 2.28 8.06 -52.49 -0.42 1.86 16
LS Contribution 289.27 15.07 4.36 4.36
Total: -1.00 -30.86 289.27 -6.45 -37.31
By element:
Atomic # 1 Polarization: 12.11 SS G_CDS: -4.74 Total: 7.37 kcal
Atomic # 6 Polarization: -8.95 SS G_CDS: -0.99 Total: -9.94 kcal
Atomic # 7 Polarization: -48.31 SS G_CDS: 0.28 Total: -48.03 kcal
Atomic # 8 Polarization: -4.93 SS G_CDS: -0.34 Total: -5.26 kcal
Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.19 kcal
Total LS contribution 4.36 Total: 4.36 kcal
Total: -30.86 -6.45 -37.31 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308909391.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.922 kcal
(2) G-P(sol) polarization free energy of solvation -30.861 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.939 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.311 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds