Wall clock time and date at job start Mon Mar 30 2020 03:45:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42893 * 1
3 3 C 1.42902 * 114.00290 * 2 1
4 4 C 1.53004 * 109.47086 * 179.97438 * 3 2 1
5 5 H 1.08997 * 109.46747 * 174.99972 * 4 3 2
6 6 C 1.53005 * 109.46856 * 55.00567 * 4 3 2
7 7 N 1.46491 * 109.47148 * 295.00267 * 4 3 2
8 8 C 1.39248 * 119.99881 * 204.99828 * 7 4 3
9 9 C 1.39714 * 120.78469 * 0.02562 * 8 7 4
10 10 C 1.38448 * 119.47466 * 180.02562 * 9 8 7
11 11 N 1.31529 * 121.10447 * 359.97438 * 10 9 8
12 12 C 1.33693 * 121.70573 * 0.02562 * 11 10 9
13 13 C 1.41458 * 119.80099 * 180.02562 * 12 11 10
14 14 H 1.07996 * 119.99680 * 187.18837 * 13 12 11
15 15 C 1.40006 * 119.99852 * 7.18983 * 13 12 11
16 16 N 1.30747 * 120.00052 * 7.22166 * 15 13 12
17 17 Si 1.86800 * 120.00059 * 187.22516 * 15 13 12
18 18 H 1.48500 * 109.46869 * 265.16954 * 17 15 13
19 19 H 1.48502 * 109.46790 * 25.16519 * 17 15 13
20 20 H 1.48503 * 109.47204 * 145.16702 * 17 15 13
21 21 C 1.39029 * 120.78537 * 180.29814 * 8 7 4
22 22 H 1.09006 * 109.46772 * 300.00007 * 1 2 3
23 23 H 1.09005 * 109.47034 * 59.99337 * 1 2 3
24 24 H 1.08998 * 109.47416 * 179.97438 * 1 2 3
25 25 H 1.08998 * 109.46951 * 60.00470 * 3 2 1
26 26 H 1.09002 * 109.47228 * 299.99951 * 3 2 1
27 27 H 1.09003 * 109.46854 * 179.97438 * 6 4 3
28 28 H 1.08997 * 109.46957 * 299.99276 * 6 4 3
29 29 H 1.08995 * 109.47072 * 59.99852 * 6 4 3
30 30 H 0.96997 * 120.00308 * 25.00179 * 7 4 3
31 31 H 1.08006 * 120.26212 * 0.03309 * 9 8 7
32 32 H 1.07998 * 119.44640 * 179.97438 * 10 9 8
33 33 H 0.97007 * 120.00287 * 180.02562 * 16 15 13
34 34 H 1.07999 * 120.55734 * 359.97438 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0102 1.3054 0.0000
4 6 3.5355 1.1845 0.0006
5 1 3.9785 2.1764 -0.0889
6 6 3.9790 0.3193 -1.1808
7 7 3.9756 0.5643 1.2526
8 6 5.2608 0.8020 1.7332
9 6 6.1436 1.6296 1.0349
10 6 7.4154 1.8468 1.5373
11 7 7.8065 1.2874 2.6616
12 6 6.9996 0.4878 3.3665
13 6 7.4619 -0.0923 4.5710
14 1 6.8587 -0.8279 5.0823
15 6 8.7013 0.2871 5.1001
16 7 9.3669 1.2755 4.5621
17 14 9.4042 -0.6190 6.5747
18 1 9.0454 0.1075 7.8192
19 1 8.8434 -1.9932 6.6246
20 1 10.8824 -0.6917 6.4526
21 6 5.6976 0.2168 2.9163
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5140 -0.8900
24 1 -0.3634 -1.0276 -0.0005
25 1 1.6887 1.8463 0.8900
26 1 1.6886 1.8464 -0.8900
27 1 5.0656 0.2336 -1.1806
28 1 3.5359 -0.6725 -1.0912
29 1 3.6514 0.7809 -2.1123
30 1 3.3719 -0.0120 1.7469
31 1 5.8364 2.0963 0.1106
32 1 8.0976 2.4863 0.9969
33 1 10.2258 1.5382 4.9285
34 1 5.0449 -0.4319 3.4817
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308909391.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:45:34
Heat of formation + Delta-G solvation = -36.246036 kcal
Electronic energy + Delta-G solvation = -16280.361221 eV
Core-core repulsion = 13598.191174 eV
Total energy + Delta-G solvation = -2682.170047 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.29577 -39.13378 -37.04803 -35.23404 -32.96357 -31.73116 -29.39586 -28.24268
-27.49194 -26.50857 -23.53641 -23.09149 -21.38275 -19.45647 -17.81685 -17.34724
-17.19709 -16.72637 -16.29144 -15.93333 -15.62314 -15.01334 -14.74862 -14.51953
-14.06219 -13.93789 -13.59877 -13.08063 -12.92530 -12.81790 -12.72543 -12.54895
-12.18856 -12.08953 -11.84047 -11.55098 -11.35277 -10.92643 -10.61708 -9.50595
-9.37562 -8.32279 -8.26583 -6.46259 1.00176 1.41281 1.42529 1.56080
1.61570 2.26143 2.64664 2.90442 2.92868 3.88280 4.05380 4.16522
4.30302 4.35089 4.47979 4.53258 4.57705 4.68851 4.75533 4.81997
4.87626 4.93983 5.01256 5.12030 5.25116 5.41274 5.45740 5.74436
5.75861 5.92163 6.22263 6.33024 6.66393 6.87813 7.01262 7.14547
8.33806 8.52816
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.043696 B = 0.005177 C = 0.004758
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 640.635788 B = 5407.661991 C = 5883.019234
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.409 6.409
3 C 0.060 3.940
4 C 0.151 3.849
5 H 0.090 0.910
6 C -0.154 4.154
7 N -0.736 5.736
8 C 0.266 3.734
9 C -0.364 4.364
10 C 0.131 3.869
11 N -0.550 5.550
12 C 0.254 3.746
13 C -0.479 4.479
14 H 0.082 0.918
15 C 0.029 3.971
16 N -0.761 5.761
17 Si 0.986 3.014
18 H -0.261 1.261
19 H -0.258 1.258
20 H -0.267 1.267
21 C -0.372 4.372
22 H 0.045 0.955
23 H 0.055 0.945
24 H 0.092 0.908
25 H 0.055 0.945
26 H 0.087 0.913
27 H 0.039 0.961
28 H 0.053 0.947
29 H 0.081 0.919
30 H 0.396 0.604
31 H 0.124 0.876
32 H 0.137 0.863
33 H 0.279 0.721
34 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.928 0.240 -7.765 15.083
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.329 6.329
3 C -0.017 4.017
4 C 0.046 3.954
5 H 0.107 0.893
6 C -0.213 4.213
7 N -0.367 5.367
8 C 0.157 3.843
9 C -0.392 4.392
10 C -0.035 4.035
11 N -0.266 5.266
12 C 0.130 3.870
13 C -0.510 4.510
14 H 0.100 0.900
15 C -0.192 4.192
16 N -0.383 5.383
17 Si 0.806 3.194
18 H -0.185 1.185
19 H -0.182 1.182
20 H -0.191 1.191
21 C -0.399 4.399
22 H 0.063 0.937
23 H 0.074 0.926
24 H 0.111 0.889
25 H 0.073 0.927
26 H 0.105 0.895
27 H 0.058 0.942
28 H 0.072 0.928
29 H 0.100 0.900
30 H 0.231 0.769
31 H 0.142 0.858
32 H 0.154 0.846
33 H 0.089 0.911
34 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -11.836 0.449 -7.581 14.063
hybrid contribution -0.838 -0.452 0.477 1.065
sum -12.674 -0.003 -7.105 14.530
Atomic orbital electron populations
1.22903 0.79615 1.03613 1.00845 1.87886 1.21289 1.28125 1.95570
1.22831 0.91783 0.85111 1.01957 1.21059 0.92848 0.97331 0.84169
0.89267 1.22088 1.00580 1.00676 0.97951 1.44500 1.11563 1.54933
1.25687 1.17736 0.85123 0.90692 0.90749 1.21096 0.97333 1.14546
1.06224 1.22721 0.93649 0.94989 0.92094 1.68611 1.36153 1.14243
1.07578 1.18726 0.87768 0.88164 0.92340 1.19898 1.03719 1.21623
1.05789 0.90033 1.26952 0.96514 0.94947 1.00832 1.70188 1.11473
1.20966 1.35665 0.85159 0.77876 0.79272 0.77083 1.18544 1.18181
1.19111 1.21240 0.99457 1.16462 1.02706 0.93654 0.92606 0.88926
0.92711 0.89546 0.94163 0.92825 0.90010 0.76944 0.85829 0.84594
0.91077 0.88703
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.41 11.01 113.37 1.25 1.66 16
2 O -0.41 -9.41 9.55 -148.98 -1.42 -10.83 16
3 C 0.06 1.27 5.68 71.98 0.41 1.68 16
4 C 0.15 4.14 2.69 45.00 0.12 4.26 16
5 H 0.09 2.43 6.53 -2.39 -0.02 2.42 16
6 C -0.15 -4.08 9.27 71.98 0.67 -3.41 16
7 N -0.74 -26.22 5.22 -318.54 -1.66 -27.89 16
8 C 0.27 12.12 6.67 38.51 0.26 12.38 16
9 C -0.36 -16.38 8.97 22.68 0.20 -16.18 16
10 C 0.13 6.61 11.17 84.79 0.95 7.55 16
11 N -0.55 -32.45 7.97 -189.38 -1.51 -33.96 16
12 C 0.25 15.07 6.52 40.18 0.26 15.33 16
13 C -0.48 -27.76 9.13 23.49 0.21 -27.55 16
14 H 0.08 4.47 7.86 -2.91 -0.02 4.45 16
15 C 0.03 1.55 5.47 85.28 0.47 2.02 16
16 N -0.76 -43.07 11.57 21.83 0.25 -42.82 16
17 Si 0.99 40.00 29.57 68.60 2.03 42.03 16
18 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16
19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16
20 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16
21 C -0.37 -19.62 9.72 22.99 0.22 -19.39 16
22 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16
23 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16
24 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16
25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16
26 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16
27 H 0.04 1.23 7.82 -2.39 -0.02 1.21 16
28 H 0.05 1.51 7.56 -2.39 -0.02 1.49 16
29 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
30 H 0.40 13.71 8.41 -92.71 -0.78 12.93 16
31 H 0.12 4.69 6.33 -2.91 -0.02 4.67 16
32 H 0.14 6.04 8.06 -2.91 -0.02 6.02 16
33 H 0.28 14.17 8.29 -92.70 -0.77 13.40 16
34 H 0.09 4.79 8.06 -2.91 -0.02 4.77 16
Total: -1.00 -68.56 289.27 3.02 -65.54
By element:
Atomic # 1 Polarization: 29.28 SS G_CDS: 0.31 Total: 29.59 kcal
Atomic # 6 Polarization: -26.68 SS G_CDS: 5.02 Total: -21.66 kcal
Atomic # 7 Polarization: -101.74 SS G_CDS: -2.92 Total: -104.66 kcal
Atomic # 8 Polarization: -9.41 SS G_CDS: -1.42 Total: -10.83 kcal
Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal
Total: -68.56 3.02 -65.54 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308909391.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.296 kcal
(2) G-P(sol) polarization free energy of solvation -68.561 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.265 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.542 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.246 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds