Wall clock time and date at job start Mon Mar 30 2020 03:44:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.46970 * 2 1
4 4 C 1.52999 * 109.47197 * 119.99848 * 2 1 3
5 5 O 1.42903 * 109.47256 * 295.00241 * 4 2 1
6 6 C 1.52998 * 109.46898 * 239.99751 * 2 1 3
7 7 N 1.46500 * 109.47097 * 65.00411 * 6 2 1
8 8 C 1.39249 * 119.99582 * 180.02562 * 7 6 2
9 9 C 1.39706 * 120.78724 * 359.97438 * 8 7 6
10 10 C 1.38452 * 119.47408 * 179.97438 * 9 8 7
11 11 N 1.31534 * 121.10439 * 0.02562 * 10 9 8
12 12 C 1.33693 * 121.70058 * 359.97438 * 11 10 9
13 13 C 1.41461 * 119.79519 * 179.97438 * 12 11 10
14 14 H 1.07992 * 120.00179 * 180.02562 * 13 12 11
15 15 C 1.40011 * 119.99816 * 0.02562 * 13 12 11
16 16 N 1.30751 * 120.00054 * 359.97438 * 15 13 12
17 17 Si 1.86799 * 119.99927 * 179.97438 * 15 13 12
18 18 H 1.48502 * 109.47427 * 89.99841 * 17 15 13
19 19 H 1.48501 * 109.47194 * 210.00090 * 17 15 13
20 20 H 1.48504 * 109.46838 * 329.99634 * 17 15 13
21 21 C 1.39027 * 120.78192 * 179.71892 * 8 7 6
22 22 H 1.08999 * 109.47029 * 60.00112 * 1 2 3
23 23 H 1.08994 * 109.47318 * 180.02562 * 1 2 3
24 24 H 1.09002 * 109.47117 * 300.00345 * 1 2 3
25 25 H 1.08997 * 109.47286 * 174.99802 * 4 2 1
26 26 H 1.09008 * 109.47201 * 54.99582 * 4 2 1
27 27 H 0.96700 * 114.00311 * 180.02562 * 5 4 2
28 28 H 1.09006 * 109.47119 * 185.00011 * 6 2 1
29 29 H 1.09000 * 109.47064 * 304.99741 * 6 2 1
30 30 H 0.96991 * 119.99911 * 359.97438 * 7 6 2
31 31 H 1.08001 * 120.26402 * 359.95203 * 9 8 7
32 32 H 1.08002 * 119.45058 * 180.02562 * 10 9 8
33 33 H 0.97006 * 120.00039 * 180.02562 * 16 15 13
34 34 H 1.08001 * 120.55246 * 0.02562 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 1.2492
5 8 1.6619 0.0168 2.4131
6 6 2.0399 -0.7213 -1.2492
7 7 1.6524 0.0353 -2.4424
8 6 2.0069 -0.4287 -3.7065
9 6 2.7324 -1.6132 -3.8560
10 6 3.0699 -2.0497 -5.1258
11 7 2.7195 -1.3674 -6.1944
12 6 2.0251 -0.2285 -6.1042
13 6 1.6698 0.4731 -7.2801
14 1 1.1093 1.3936 -7.2111
15 6 2.0449 -0.0260 -8.5333
16 7 2.7240 -1.1402 -8.6168
17 14 1.5752 0.9001 -10.0861
18 1 2.6470 1.8694 -10.4278
19 1 1.4036 -0.0625 -11.2038
20 1 0.3014 1.6295 -9.8611
21 6 1.6427 0.2732 -4.8500
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8900
25 1 3.1263 -0.7995 1.2056
26 1 1.6053 -1.7198 1.2952
27 1 1.9532 -0.3828 3.2441
28 1 3.1263 -0.7995 -1.2056
29 1 1.6053 -1.7199 -1.2950
30 1 1.1483 0.8590 -2.3518
31 1 3.0278 -2.1838 -2.9879
32 1 3.6304 -2.9657 -5.2409
33 1 2.9841 -1.4858 -9.4850
34 1 1.0785 1.1910 -4.7744
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000309003876.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:44:41
Heat of formation + Delta-G solvation = -27.593311 kcal
Electronic energy + Delta-G solvation = -16016.956369 eV
Core-core repulsion = 13335.161532 eV
Total energy + Delta-G solvation = -2681.794837 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-38.51781 -37.66020 -35.78436 -33.59652 -32.63165 -29.85388 -28.55026 -26.79941
-25.77128 -24.46535 -21.66129 -20.67199 -20.03769 -17.62668 -17.49960 -15.83852
-15.58111 -15.24688 -14.81105 -14.17131 -14.06595 -13.90655 -13.23048 -12.86396
-12.72468 -12.54293 -12.11980 -12.05805 -11.40930 -11.21618 -11.10748 -10.92207
-10.79634 -10.57894 -10.34225 -10.16503 -9.71201 -9.68644 -9.07482 -7.53305
-7.42348 -6.64073 -6.28834 -4.43815 2.86802 3.13817 3.16997 3.23105
3.40242 3.79088 4.01933 4.43408 4.75418 4.87417 4.90065 5.03821
5.33946 5.45758 5.53997 5.78994 5.90136 5.97643 6.09862 6.18016
6.20333 6.28520 6.50429 6.74797 6.97186 7.15919 7.25118 7.40105
7.55594 7.67440 7.74355 8.32190 8.44697 8.52718 8.83678 9.08381
10.28910 10.44928
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.057929 B = 0.004504 C = 0.004248
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 483.237349 B = 6214.836193 C = 6589.341459
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.103 4.103
3 H 0.080 0.920
4 C 0.084 3.916
5 O -0.573 6.573
6 C 0.142 3.858
7 N -0.753 5.753
8 C 0.255 3.745
9 C -0.372 4.372
10 C 0.149 3.851
11 N -0.507 5.507
12 C 0.282 3.718
13 C -0.436 4.436
14 H 0.080 0.920
15 C 0.071 3.929
16 N -0.717 5.717
17 Si 0.905 3.095
18 H -0.270 1.270
19 H -0.277 1.277
20 H -0.262 1.262
21 C -0.345 4.345
22 H 0.057 0.943
23 H 0.053 0.947
24 H 0.059 0.941
25 H 0.048 0.952
26 H 0.048 0.952
27 H 0.378 0.622
28 H 0.052 0.948
29 H 0.053 0.947
30 H 0.390 0.610
31 H 0.090 0.910
32 H 0.116 0.884
33 H 0.271 0.729
34 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.258 0.104 13.601 13.660
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.122 4.122
3 H 0.099 0.901
4 C 0.005 3.995
5 O -0.378 6.378
6 C 0.017 3.983
7 N -0.387 5.387
8 C 0.149 3.851
9 C -0.400 4.400
10 C -0.018 4.018
11 N -0.221 5.221
12 C 0.158 3.842
13 C -0.467 4.467
14 H 0.099 0.901
15 C -0.154 4.154
16 N -0.338 5.338
17 Si 0.729 3.271
18 H -0.195 1.195
19 H -0.202 1.202
20 H -0.186 1.186
21 C -0.372 4.372
22 H 0.076 0.924
23 H 0.072 0.928
24 H 0.078 0.922
25 H 0.066 0.934
26 H 0.066 0.934
27 H 0.224 0.776
28 H 0.070 0.930
29 H 0.071 0.929
30 H 0.223 0.777
31 H 0.109 0.891
32 H 0.133 0.867
33 H 0.082 0.918
34 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -1.139 -0.065 12.238 12.291
hybrid contribution -0.301 0.557 0.702 0.945
sum -1.440 0.492 12.939 13.029
Atomic orbital electron populations
1.21750 0.94245 1.01997 1.01892 1.21310 0.97233 1.00810 0.92860
0.90129 1.22114 0.98098 0.94078 0.85181 1.86467 1.81575 1.53422
1.16354 1.20979 0.98664 0.94902 0.83757 1.44286 1.63979 1.27927
1.02500 1.17647 0.91458 0.92265 0.83700 1.20835 1.18880 1.02252
0.98003 1.22289 0.94168 0.96925 0.88420 1.68759 1.16509 1.08171
1.28684 1.18332 0.86898 0.88199 0.90762 1.19575 1.30276 1.07226
0.89647 0.90146 1.26059 0.93917 0.94693 1.00725 1.70167 1.23014
1.15344 1.25284 0.86381 0.79946 0.79988 0.80756 1.19491 1.20193
1.18641 1.21154 1.18462 1.05312 0.92310 0.92373 0.92785 0.92184
0.93391 0.93358 0.77566 0.93000 0.92864 0.77656 0.89135 0.86675
0.91828 0.88812
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.68 8.96 37.16 0.33 -1.34 16
2 C -0.10 -1.24 2.66 -90.62 -0.24 -1.48 16
3 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16
4 C 0.08 0.83 6.43 37.16 0.24 1.06 16
5 O -0.57 -5.63 13.20 -35.23 -0.46 -6.10 16
6 C 0.14 2.07 4.33 -4.04 -0.02 2.05 16
7 N -0.75 -13.52 5.45 -58.50 -0.32 -13.84 16
8 C 0.25 5.82 6.69 -83.65 -0.56 5.26 16
9 C -0.37 -8.57 9.40 -38.95 -0.37 -8.94 16
10 C 0.15 3.74 11.17 -17.60 -0.20 3.55 16
11 N -0.51 -14.49 7.86 -11.21 -0.09 -14.58 16
12 C 0.28 8.03 6.55 -85.02 -0.56 7.47 16
13 C -0.44 -12.11 9.14 -37.69 -0.34 -12.45 16
14 H 0.08 2.10 7.85 -52.49 -0.41 1.68 16
15 C 0.07 1.87 5.50 -17.35 -0.10 1.77 16
16 N -0.72 -19.68 11.46 55.55 0.64 -19.04 16
17 Si 0.91 19.08 29.56 -169.99 -5.02 14.06 16
18 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16
19 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16
20 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16
21 C -0.35 -8.81 9.72 -38.48 -0.37 -9.18 16
22 H 0.06 0.72 7.18 -51.93 -0.37 0.35 16
23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16
24 H 0.06 0.69 7.82 -51.93 -0.41 0.28 16
25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16
26 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16
27 H 0.38 1.91 9.12 45.56 0.42 2.32 16
28 H 0.05 0.77 7.99 -51.93 -0.41 0.35 16
29 H 0.05 0.79 7.99 -51.93 -0.41 0.37 16
30 H 0.39 6.44 7.68 -40.82 -0.31 6.12 16
31 H 0.09 1.84 6.87 -52.49 -0.36 1.48 16
32 H 0.12 2.57 8.06 -52.49 -0.42 2.15 16
33 H 0.27 6.71 8.29 -40.82 -0.34 6.37 16
34 H 0.09 2.25 8.06 -52.49 -0.42 1.82 16
LS Contribution 288.87 15.07 4.35 4.35
Total: -1.00 -31.73 288.87 -7.04 -38.77
By element:
Atomic # 1 Polarization: 12.56 SS G_CDS: -3.95 Total: 8.61 kcal
Atomic # 6 Polarization: -10.05 SS G_CDS: -2.18 Total: -12.23 kcal
Atomic # 7 Polarization: -47.69 SS G_CDS: 0.23 Total: -47.46 kcal
Atomic # 8 Polarization: -5.63 SS G_CDS: -0.46 Total: -6.10 kcal
Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal
Total LS contribution 4.35 Total: 4.35 kcal
Total: -31.73 -7.04 -38.77 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000309003876.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.175 kcal
(2) G-P(sol) polarization free energy of solvation -31.732 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.556 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.768 kcal
(6) G-S(sol) free energy of system = (1) + (5) -27.593 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds