Wall clock time and date at job start Mon Mar 30 2020 03:44:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09000 * 109.46970 * 2 1
4 4 C 1.52999 * 109.47197 * 119.99848 * 2 1 3
5 5 O 1.42903 * 109.47256 * 295.00241 * 4 2 1
6 6 C 1.52998 * 109.46898 * 239.99751 * 2 1 3
7 7 N 1.46500 * 109.47097 * 65.00411 * 6 2 1
8 8 C 1.39249 * 119.99582 * 180.02562 * 7 6 2
9 9 C 1.39706 * 120.78724 * 359.97438 * 8 7 6
10 10 C 1.38452 * 119.47408 * 179.97438 * 9 8 7
11 11 N 1.31534 * 121.10439 * 0.02562 * 10 9 8
12 12 C 1.33693 * 121.70058 * 359.97438 * 11 10 9
13 13 C 1.41461 * 119.79519 * 179.97438 * 12 11 10
14 14 H 1.07992 * 120.00179 * 180.02562 * 13 12 11
15 15 C 1.40011 * 119.99816 * 0.02562 * 13 12 11
16 16 N 1.30751 * 120.00054 * 359.97438 * 15 13 12
17 17 Si 1.86799 * 119.99927 * 179.97438 * 15 13 12
18 18 H 1.48502 * 109.47427 * 89.99841 * 17 15 13
19 19 H 1.48501 * 109.47194 * 210.00090 * 17 15 13
20 20 H 1.48504 * 109.46838 * 329.99634 * 17 15 13
21 21 C 1.39027 * 120.78192 * 179.71892 * 8 7 6
22 22 H 1.08999 * 109.47029 * 60.00112 * 1 2 3
23 23 H 1.08994 * 109.47318 * 180.02562 * 1 2 3
24 24 H 1.09002 * 109.47117 * 300.00345 * 1 2 3
25 25 H 1.08997 * 109.47286 * 174.99802 * 4 2 1
26 26 H 1.09008 * 109.47201 * 54.99582 * 4 2 1
27 27 H 0.96700 * 114.00311 * 180.02562 * 5 4 2
28 28 H 1.09006 * 109.47119 * 185.00011 * 6 2 1
29 29 H 1.09000 * 109.47064 * 304.99741 * 6 2 1
30 30 H 0.96991 * 119.99911 * 359.97438 * 7 6 2
31 31 H 1.08001 * 120.26402 * 359.95203 * 9 8 7
32 32 H 1.08002 * 119.45058 * 180.02562 * 10 9 8
33 33 H 0.97006 * 120.00039 * 180.02562 * 16 15 13
34 34 H 1.08001 * 120.55246 * 0.02562 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 1.2492
5 8 1.6619 0.0168 2.4131
6 6 2.0399 -0.7213 -1.2492
7 7 1.6524 0.0353 -2.4424
8 6 2.0069 -0.4287 -3.7065
9 6 2.7324 -1.6132 -3.8560
10 6 3.0699 -2.0497 -5.1258
11 7 2.7195 -1.3674 -6.1944
12 6 2.0251 -0.2285 -6.1042
13 6 1.6698 0.4731 -7.2801
14 1 1.1093 1.3936 -7.2111
15 6 2.0449 -0.0260 -8.5333
16 7 2.7240 -1.1402 -8.6168
17 14 1.5752 0.9001 -10.0861
18 1 2.6470 1.8694 -10.4278
19 1 1.4036 -0.0625 -11.2038
20 1 0.3014 1.6295 -9.8611
21 6 1.6427 0.2732 -4.8500
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0276 0.0005
24 1 -0.3633 0.5139 0.8900
25 1 3.1263 -0.7995 1.2056
26 1 1.6053 -1.7198 1.2952
27 1 1.9532 -0.3828 3.2441
28 1 3.1263 -0.7995 -1.2056
29 1 1.6053 -1.7199 -1.2950
30 1 1.1483 0.8590 -2.3518
31 1 3.0278 -2.1838 -2.9879
32 1 3.6304 -2.9657 -5.2409
33 1 2.9841 -1.4858 -9.4850
34 1 1.0785 1.1910 -4.7744
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000309003876.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:44:41
Heat of formation + Delta-G solvation = -50.792890 kcal
Electronic energy + Delta-G solvation = -16017.962378 eV
Core-core repulsion = 13335.161532 eV
Total energy + Delta-G solvation = -2682.800846 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.20622 -38.78744 -37.03801 -35.35451 -34.08916 -31.81380 -30.20474 -27.95501
-27.44654 -25.78386 -23.50802 -22.42436 -21.18219 -19.39226 -18.38905 -17.56013
-16.86078 -16.61572 -16.38476 -15.92006 -15.32531 -15.14363 -14.85944 -14.30724
-14.14405 -13.99490 -13.67761 -13.41390 -12.92697 -12.86309 -12.59262 -12.40719
-12.15228 -11.94206 -11.70626 -11.53824 -11.36554 -10.92841 -10.87087 -9.52301
-9.40565 -8.34740 -8.22646 -6.48892 0.98580 1.40912 1.41762 1.55829
1.60919 2.25709 2.58959 2.92129 3.42872 3.85158 3.93445 4.06287
4.19159 4.30433 4.51386 4.56871 4.60510 4.68179 4.73495 4.86277
4.92400 4.98343 5.07824 5.22193 5.23767 5.32664 5.42674 5.71147
5.73483 5.89447 6.31357 6.62226 6.83976 6.92612 6.98783 7.11672
8.33499 8.52539
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.057929 B = 0.004504 C = 0.004248
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 483.237349 B = 6214.836193 C = 6589.341459
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.097 4.097
3 H 0.074 0.926
4 C 0.087 3.913
5 O -0.590 6.590
6 C 0.140 3.860
7 N -0.742 5.742
8 C 0.262 3.738
9 C -0.366 4.366
10 C 0.131 3.869
11 N -0.547 5.547
12 C 0.251 3.749
13 C -0.476 4.476
14 H 0.083 0.917
15 C 0.025 3.975
16 N -0.757 5.757
17 Si 0.987 3.013
18 H -0.262 1.262
19 H -0.267 1.267
20 H -0.257 1.257
21 C -0.370 4.370
22 H 0.047 0.953
23 H 0.056 0.944
24 H 0.063 0.937
25 H 0.059 0.941
26 H 0.061 0.939
27 H 0.399 0.601
28 H 0.056 0.944
29 H 0.057 0.943
30 H 0.397 0.603
31 H 0.122 0.878
32 H 0.137 0.863
33 H 0.277 0.723
34 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.388 0.169 14.883 14.948
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.116 4.116
3 H 0.092 0.908
4 C 0.009 3.991
5 O -0.399 6.399
6 C 0.016 3.984
7 N -0.374 5.374
8 C 0.153 3.847
9 C -0.394 4.394
10 C -0.035 4.035
11 N -0.262 5.262
12 C 0.126 3.874
13 C -0.507 4.507
14 H 0.101 0.899
15 C -0.196 4.196
16 N -0.379 5.379
17 Si 0.807 3.193
18 H -0.187 1.187
19 H -0.191 1.191
20 H -0.181 1.181
21 C -0.397 4.397
22 H 0.066 0.934
23 H 0.075 0.925
24 H 0.082 0.918
25 H 0.077 0.923
26 H 0.079 0.921
27 H 0.249 0.751
28 H 0.075 0.925
29 H 0.075 0.925
30 H 0.232 0.768
31 H 0.140 0.860
32 H 0.154 0.846
33 H 0.088 0.912
34 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -1.268 -0.007 13.602 13.661
hybrid contribution -0.246 0.494 0.537 0.770
sum -1.514 0.487 14.139 14.228
Atomic orbital electron populations
1.21723 0.94214 1.02104 1.01587 1.21218 0.97155 1.00387 0.92828
0.90794 1.22028 0.98709 0.94071 0.84315 1.86405 1.81926 1.54122
1.17398 1.21164 0.99037 0.94941 0.83245 1.44377 1.62934 1.28227
1.01912 1.17709 0.90270 0.91739 0.84950 1.21108 1.17748 1.02218
0.98308 1.22757 0.94324 0.97539 0.88830 1.68703 1.17998 1.09020
1.30518 1.18764 0.87615 0.88790 0.92202 1.19939 1.31842 1.07998
0.90910 0.89879 1.26996 0.93293 0.95453 1.03894 1.70265 1.24085
1.16980 1.26582 0.85149 0.79717 0.78524 0.75876 1.18712 1.19119
1.18055 1.21248 1.19622 1.06142 0.92684 0.93370 0.92457 0.91800
0.92324 0.92112 0.75112 0.92539 0.92454 0.76825 0.85987 0.84559
0.91192 0.88375
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.01 8.96 71.98 0.65 -2.36 16
2 C -0.10 -2.08 2.66 -10.80 -0.03 -2.11 16
3 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16
4 C 0.09 1.45 6.43 71.98 0.46 1.91 16
5 O -0.59 -9.88 13.20 -148.98 -1.97 -11.85 16
6 C 0.14 3.71 4.33 86.38 0.37 4.09 16
7 N -0.74 -25.43 5.45 -339.00 -1.85 -27.27 16
8 C 0.26 11.78 6.69 38.51 0.26 12.03 16
9 C -0.37 -16.40 9.40 22.68 0.21 -16.19 16
10 C 0.13 6.58 11.17 84.79 0.95 7.52 16
11 N -0.55 -32.05 7.86 -189.37 -1.49 -33.54 16
12 C 0.25 14.69 6.55 40.18 0.26 14.95 16
13 C -0.48 -27.25 9.14 23.49 0.21 -27.04 16
14 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16
15 C 0.02 1.33 5.50 85.28 0.47 1.80 16
16 N -0.76 -42.58 11.46 21.83 0.25 -42.33 16
17 Si 0.99 39.60 29.56 68.60 2.03 41.63 16
18 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16
19 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16
20 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16
21 C -0.37 -19.18 9.72 22.98 0.22 -18.96 16
22 H 0.05 1.12 7.18 -2.39 -0.02 1.10 16
23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16
24 H 0.06 1.34 7.82 -2.39 -0.02 1.32 16
25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16
26 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16
27 H 0.40 2.81 9.12 -74.06 -0.68 2.14 16
28 H 0.06 1.49 7.99 -2.38 -0.02 1.47 16
29 H 0.06 1.52 7.99 -2.39 -0.02 1.50 16
30 H 0.40 12.59 7.68 -92.71 -0.71 11.88 16
31 H 0.12 4.62 6.87 -2.91 -0.02 4.60 16
32 H 0.14 6.03 8.06 -2.91 -0.02 6.00 16
33 H 0.28 14.03 8.29 -92.70 -0.77 13.26 16
34 H 0.10 4.81 8.06 -2.91 -0.02 4.79 16
Total: -1.00 -69.47 288.87 0.74 -68.73
By element:
Atomic # 1 Polarization: 29.26 SS G_CDS: -0.28 Total: 28.99 kcal
Atomic # 6 Polarization: -28.39 SS G_CDS: 4.04 Total: -24.35 kcal
Atomic # 7 Polarization: -100.06 SS G_CDS: -3.09 Total: -103.14 kcal
Atomic # 8 Polarization: -9.88 SS G_CDS: -1.97 Total: -11.85 kcal
Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal
Total: -69.47 0.74 -68.73 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000309003876.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.934 kcal
(2) G-P(sol) polarization free energy of solvation -69.467 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.533 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.727 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.793 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds