Wall clock time and date at job start Mon Mar 30 2020 03:39:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08996 * 109.46907 * 2 1
4 4 O 1.42896 * 109.47524 * 120.00499 * 2 1 3
5 5 C 1.53003 * 109.47041 * 240.00513 * 2 1 3
6 6 C 1.52996 * 109.47301 * 174.99629 * 5 2 1
7 7 N 1.46498 * 109.47059 * 179.97438 * 6 5 2
8 8 C 1.38826 * 119.99929 * 179.72446 * 7 6 5
9 9 C 1.39803 * 119.58329 * 0.27967 * 8 7 6
10 10 C 1.38598 * 119.49027 * 179.97438 * 9 8 7
11 11 C 1.38380 * 118.68061 * 359.97438 * 10 9 8
12 12 C 1.40559 * 119.15236 * 0.02562 * 11 10 9
13 13 C 1.41316 * 119.78778 * 180.02562 * 12 11 10
14 14 H 1.08001 * 119.99697 * 359.97438 * 13 12 11
15 15 C 1.40026 * 119.99906 * 179.97438 * 13 12 11
16 16 N 1.30740 * 120.00312 * 0.02562 * 15 13 12
17 17 Si 1.86801 * 119.99593 * 179.97438 * 15 13 12
18 18 H 1.48502 * 109.47264 * 0.02562 * 17 15 13
19 19 H 1.48502 * 109.46798 * 120.00373 * 17 15 13
20 20 H 1.48505 * 109.47212 * 240.00102 * 17 15 13
21 21 N 1.31955 * 119.58557 * 180.02562 * 8 7 6
22 22 H 1.09000 * 109.47427 * 59.99228 * 1 2 3
23 23 H 1.09003 * 109.47155 * 179.97438 * 1 2 3
24 24 H 1.09003 * 109.47089 * 299.99534 * 1 2 3
25 25 H 0.96701 * 113.99783 * 299.99763 * 4 2 1
26 26 H 1.09004 * 109.47038 * 54.99639 * 5 2 1
27 27 H 1.09000 * 109.46939 * 295.00292 * 5 2 1
28 28 H 1.09004 * 109.47066 * 60.00027 * 6 5 2
29 29 H 1.08994 * 109.46974 * 300.00175 * 6 5 2
30 30 H 0.97001 * 120.00384 * 0.02562 * 7 6 5
31 31 H 1.07998 * 120.25142 * 359.95312 * 9 8 7
32 32 H 1.08002 * 120.65631 * 180.02562 * 10 9 8
33 33 H 1.07998 * 120.42591 * 179.97438 * 11 10 9
34 34 H 0.96995 * 120.00059 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 8 2.0064 -0.6737 1.1667
5 6 2.0400 -0.7212 -1.2493
6 6 3.5648 -0.6131 -1.3139
7 7 4.0531 -1.3042 -2.5098
8 6 5.4131 -1.3362 -2.7863
9 6 6.3096 -0.7111 -1.9144
10 6 7.6671 -0.7447 -2.1920
11 6 8.0957 -1.4015 -3.3321
12 6 7.1454 -2.0108 -4.1694
13 6 7.5683 -2.6856 -5.3368
14 1 8.6188 -2.7315 -5.5833
15 6 6.6254 -3.2946 -6.1739
16 7 5.3537 -3.2386 -5.8758
17 14 7.1845 -4.1860 -7.7174
18 1 8.6633 -4.1052 -7.8275
19 1 6.7711 -5.6104 -7.6436
20 1 6.5637 -3.5514 -8.9079
21 7 5.8440 -1.9605 -3.8660
22 1 -0.3634 0.5139 -0.8899
23 1 -0.3633 -1.0277 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 1.7211 -0.2702 1.9979
26 1 1.6053 -0.2616 -2.1370
27 1 1.7516 -1.7714 -1.2058
28 1 3.9995 -1.0727 -0.4262
29 1 3.8531 0.4371 -1.3574
30 1 3.4258 -1.7356 -3.1108
31 1 5.9470 -0.2056 -1.0315
32 1 8.3762 -0.2684 -1.5312
33 1 9.1470 -1.4446 -3.5758
34 1 4.7005 -3.6602 -6.4558
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000309050596.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:39:55
Heat of formation + Delta-G solvation = -24.916363 kcal
Electronic energy + Delta-G solvation = -16110.583220 eV
Core-core repulsion = 13428.904465 eV
Total energy + Delta-G solvation = -2681.678756 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-38.35641 -37.74012 -35.15768 -33.33044 -32.02401 -30.34957 -29.48963 -27.52731
-25.27872 -23.21576 -21.60383 -20.77186 -20.21162 -17.56593 -17.28648 -16.22228
-15.13136 -14.79740 -14.56317 -14.22154 -14.14688 -13.93662 -13.19564 -12.80549
-12.65287 -12.29942 -12.08941 -11.91506 -11.39171 -11.29752 -11.03102 -10.92030
-10.76172 -10.53008 -10.35885 -10.06929 -9.83485 -9.42359 -8.80030 -7.83927
-7.44240 -6.42425 -6.26807 -4.41293 2.91654 3.14802 3.19511 3.30790
3.35576 4.02811 4.11732 4.25829 4.83226 4.88814 4.90507 5.12087
5.38163 5.51857 5.58380 5.70369 5.91517 5.95829 6.10680 6.22461
6.31593 6.41902 6.66909 6.93727 6.96357 7.02553 7.31407 7.56737
7.67445 7.89055 7.99415 8.23930 8.44462 8.77094 8.87184 9.19652
10.31352 10.47031
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033185 B = 0.005356 C = 0.004688
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 843.558135 B = 5226.361576 C = 5971.286339
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.104 3.896
3 H 0.057 0.943
4 O -0.563 6.563
5 C -0.124 4.124
6 C 0.145 3.855
7 N -0.741 5.741
8 C 0.411 3.589
9 C -0.366 4.366
10 C -0.032 4.032
11 C -0.318 4.318
12 C 0.292 3.708
13 C -0.436 4.436
14 H 0.083 0.917
15 C 0.071 3.929
16 N -0.717 5.717
17 Si 0.904 3.096
18 H -0.261 1.261
19 H -0.274 1.274
20 H -0.275 1.275
21 N -0.532 5.532
22 H 0.066 0.934
23 H 0.063 0.937
24 H 0.056 0.944
25 H 0.374 0.626
26 H 0.079 0.921
27 H 0.075 0.925
28 H 0.058 0.942
29 H 0.046 0.954
30 H 0.394 0.606
31 H 0.090 0.910
32 H 0.092 0.908
33 H 0.094 0.906
34 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.724 4.838 7.586 12.533
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.243 4.243
2 C 0.045 3.955
3 H 0.075 0.925
4 O -0.369 6.369
5 C -0.162 4.162
6 C 0.019 3.981
7 N -0.377 5.377
8 C 0.171 3.829
9 C -0.392 4.392
10 C -0.057 4.057
11 C -0.341 4.341
12 C 0.165 3.835
13 C -0.468 4.468
14 H 0.101 0.899
15 C -0.153 4.153
16 N -0.339 5.339
17 Si 0.729 3.271
18 H -0.185 1.185
19 H -0.200 1.200
20 H -0.200 1.200
21 N -0.254 5.254
22 H 0.085 0.915
23 H 0.083 0.917
24 H 0.075 0.925
25 H 0.220 0.780
26 H 0.098 0.902
27 H 0.093 0.907
28 H 0.076 0.924
29 H 0.065 0.935
30 H 0.228 0.772
31 H 0.108 0.892
32 H 0.110 0.890
33 H 0.113 0.887
34 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -9.217 4.088 6.678 12.094
hybrid contribution 0.242 0.297 0.118 0.401
sum -8.975 4.384 6.796 12.082
Atomic orbital electron populations
1.22513 0.96566 1.02869 1.02319 1.21722 0.92456 0.95364 0.85959
0.92531 1.86610 1.77002 1.57495 1.15762 1.21802 0.96358 1.02048
0.95998 1.20980 0.92050 0.96292 0.88729 1.44158 1.04517 1.62210
1.26843 1.18543 0.84008 0.89914 0.90426 1.20632 0.93805 1.19415
1.05335 1.20594 0.94256 0.95519 0.95310 1.21524 0.98776 1.13056
1.00707 1.18214 0.85920 0.88119 0.91243 1.19608 0.94500 1.28489
1.04228 0.89886 1.26047 0.94648 0.95639 0.98982 1.70168 1.01336
1.29552 1.32881 0.86335 0.80182 0.79340 0.81275 1.18454 1.19981
1.19988 1.68222 1.16668 1.23915 1.16595 0.91516 0.91743 0.92487
0.77977 0.90198 0.90650 0.92352 0.93549 0.77167 0.89178 0.88974
0.88745 0.92074
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.55 9.53 37.16 0.35 -1.19 16
2 C 0.10 1.10 3.58 -26.73 -0.10 1.01 16
3 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
4 O -0.56 -6.45 12.85 -35.23 -0.45 -6.90 16
5 C -0.12 -1.62 5.04 -26.73 -0.13 -1.76 16
6 C 0.15 2.46 4.78 -4.04 -0.02 2.44 16
7 N -0.74 -15.75 5.72 -60.39 -0.35 -16.10 16
8 C 0.41 10.58 7.65 -155.32 -1.19 9.40 16
9 C -0.37 -8.94 9.34 -38.86 -0.36 -9.30 16
10 C -0.03 -0.79 10.15 -39.40 -0.40 -1.19 16
11 C -0.32 -8.35 9.83 -38.65 -0.38 -8.73 16
12 C 0.29 8.43 6.55 -85.00 -0.56 7.88 16
13 C -0.44 -12.17 9.14 -37.74 -0.34 -12.51 16
14 H 0.08 2.17 7.85 -52.49 -0.41 1.76 16
15 C 0.07 1.88 5.50 -17.35 -0.10 1.79 16
16 N -0.72 -19.58 11.46 55.55 0.64 -18.95 16
17 Si 0.90 19.14 29.56 -169.99 -5.02 14.11 16
18 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16
19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16
20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16
21 N -0.53 -15.30 7.89 -10.32 -0.08 -15.38 16
22 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16
23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
25 H 0.37 2.52 9.08 45.56 0.41 2.94 16
26 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
28 H 0.06 1.07 7.60 -51.93 -0.39 0.67 16
29 H 0.05 0.78 7.91 -51.93 -0.41 0.37 16
30 H 0.39 8.25 8.59 -40.82 -0.35 7.90 16
31 H 0.09 1.99 6.68 -52.49 -0.35 1.64 16
32 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16
33 H 0.09 2.30 8.06 -52.49 -0.42 1.88 16
34 H 0.27 6.61 8.29 -40.82 -0.34 6.27 16
LS Contribution 290.86 15.07 4.38 4.38
Total: -1.00 -32.11 290.86 -8.13 -40.24
By element:
Atomic # 1 Polarization: 14.79 SS G_CDS: -4.02 Total: 10.77 kcal
Atomic # 6 Polarization: -8.95 SS G_CDS: -3.22 Total: -12.18 kcal
Atomic # 7 Polarization: -50.64 SS G_CDS: 0.21 Total: -50.43 kcal
Atomic # 8 Polarization: -6.45 SS G_CDS: -0.45 Total: -6.90 kcal
Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.11 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -32.11 -8.13 -40.24 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000309050596.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.327 kcal
(2) G-P(sol) polarization free energy of solvation -32.114 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.787 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.244 kcal
(6) G-S(sol) free energy of system = (1) + (5) -24.916 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds