Wall clock time and date at job start Mon Mar 30 2020 03:39:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08996 * 109.47243 * 2 1
4 4 O 1.42900 * 109.46883 * 239.99930 * 2 1 3
5 5 C 1.52998 * 109.46852 * 120.00143 * 2 1 3
6 6 C 1.53006 * 109.47171 * 184.99774 * 5 2 1
7 7 N 1.46497 * 109.46923 * 179.97438 * 6 5 2
8 8 C 1.31326 * 119.99722 * 114.87939 * 7 6 5
9 9 C 1.46255 * 119.88385 * 186.50367 * 8 7 6
10 10 C 1.35434 * 119.08946 * 179.97438 * 9 8 7
11 11 C 1.46646 * 118.84390 * 0.02562 * 10 9 8
12 12 C 1.41119 * 120.13777 * 180.02562 * 11 10 9
13 13 H 1.08010 * 119.99857 * 202.23889 * 12 11 10
14 14 C 1.39612 * 120.00120 * 22.23686 * 12 11 10
15 15 N 1.31073 * 119.99910 * 18.63287 * 14 12 11
16 16 Si 1.86804 * 120.00367 * 198.62927 * 14 12 11
17 17 H 1.48500 * 109.47157 * 89.99759 * 16 14 12
18 18 H 1.48496 * 109.47517 * 210.00437 * 16 14 12
19 19 H 1.48502 * 109.46898 * 330.00222 * 16 14 12
20 20 C 1.39254 * 119.72604 * 359.97438 * 11 10 9
21 21 N 1.34552 * 120.89785 * 359.73960 * 20 11 10
22 22 H 0.96992 * 119.39787 * 180.25862 * 21 20 11
23 23 H 1.08996 * 109.47243 * 179.97438 * 1 2 3
24 24 H 1.09001 * 109.47056 * 300.00303 * 1 2 3
25 25 H 1.09001 * 109.46574 * 59.99570 * 1 2 3
26 26 H 0.96699 * 114.00281 * 300.00245 * 4 2 1
27 27 H 1.08999 * 109.47520 * 304.99552 * 5 2 1
28 28 H 1.09000 * 109.47597 * 64.99825 * 5 2 1
29 29 H 1.08999 * 109.46717 * 300.00270 * 6 5 2
30 30 H 1.08999 * 109.46497 * 60.00011 * 6 5 2
31 31 H 1.07999 * 120.45306 * 359.95782 * 9 8 7
32 32 H 1.07996 * 120.58204 * 179.97438 * 10 9 8
33 33 H 0.96996 * 119.99759 * 179.97438 * 15 14 12
34 34 H 1.08000 * 119.55740 * 180.02562 * 20 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 8 2.0063 -0.6737 -1.1668
5 6 2.0400 -0.7213 1.2492
6 6 3.5649 -0.6134 1.3137
7 7 4.0530 -1.3035 2.5102
8 6 4.8060 -2.3728 2.3902
9 6 5.1741 -3.1419 3.5784
10 6 5.9508 -4.2422 3.4360
11 6 6.3969 -4.6242 2.0923
12 6 7.2066 -5.7659 1.9124
13 1 7.8225 -5.8576 1.0298
14 6 7.2116 -6.7769 2.8752
15 7 6.2313 -6.8623 3.7410
16 14 8.6155 -8.0081 2.9296
17 1 9.6883 -7.4966 3.8199
18 1 8.1160 -9.3057 3.4510
19 1 9.1582 -8.2007 1.5607
20 6 6.0173 -3.8562 0.9944
21 7 5.2406 -2.7683 1.1476
22 1 4.9861 -2.2513 0.3674
23 1 -0.3633 -1.0276 -0.0005
24 1 -0.3633 0.5139 0.8900
25 1 -0.3632 0.5139 -0.8900
26 1 1.7210 -1.5952 -1.2329
27 1 1.6054 -0.2618 2.1370
28 1 1.7516 -1.7715 1.2056
29 1 3.9994 -1.0729 0.4260
30 1 3.8532 0.4369 1.3574
31 1 4.8314 -2.8365 4.5560
32 1 6.2374 -4.8277 4.2971
33 1 6.2346 -7.5649 4.4097
34 1 6.3471 -4.1403 0.0060
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000379947050.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:39:58
Heat of formation + Delta-G solvation = -15.076284 kcal
Electronic energy + Delta-G solvation = -16095.577419 eV
Core-core repulsion = 13414.325361 eV
Total energy + Delta-G solvation = -2681.252058 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-38.77440 -37.73991 -34.84973 -33.37197 -31.64248 -31.46134 -29.56984 -27.77824
-24.60074 -23.55224 -21.65477 -21.13624 -20.06593 -18.25757 -16.33594 -16.20637
-15.77153 -15.33641 -14.90782 -14.65908 -13.83182 -13.62212 -13.38686 -12.89036
-12.86442 -12.52484 -12.01929 -11.88106 -11.61662 -11.32474 -11.18260 -10.85413
-10.74387 -10.70069 -10.24366 -9.93405 -9.78928 -9.41068 -8.93414 -8.53224
-8.25870 -6.83871 -6.29091 -4.15365 2.43064 2.87394 3.08346 3.11061
3.31055 3.93292 4.35006 4.37258 4.47089 4.86574 5.08818 5.15118
5.37454 5.48419 5.56815 5.73266 5.84920 5.90064 6.09148 6.12367
6.22705 6.37525 6.53977 6.60382 6.74565 6.81155 7.15909 7.37377
7.49666 7.66106 7.70990 8.15450 8.23750 8.56937 8.78549 8.93925
9.34039 10.20972
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.049943 B = 0.004710 C = 0.004568
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 560.508899 B = 5944.002224 C = 6127.573150
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.099 3.901
3 H 0.095 0.905
4 O -0.566 6.566
5 C -0.142 4.142
6 C 0.072 3.928
7 N -0.681 5.681
8 C 0.407 3.593
9 C -0.195 4.195
10 C -0.006 4.006
11 C 0.034 3.966
12 C -0.458 4.458
13 H 0.077 0.923
14 C 0.074 3.926
15 N -0.816 5.816
16 Si 0.909 3.091
17 H -0.269 1.269
18 H -0.280 1.280
19 H -0.264 1.264
20 C -0.108 4.108
21 N -0.615 5.615
22 H 0.392 0.608
23 H 0.056 0.944
24 H 0.065 0.935
25 H 0.059 0.941
26 H 0.373 0.627
27 H 0.073 0.927
28 H 0.058 0.942
29 H 0.022 0.978
30 H 0.052 0.948
31 H 0.124 0.876
32 H 0.139 0.861
33 H 0.280 0.720
34 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.188 5.263 -3.717 8.273
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C 0.040 3.960
3 H 0.113 0.887
4 O -0.372 6.372
5 C -0.181 4.181
6 C -0.060 4.060
7 N -0.420 5.420
8 C 0.145 3.855
9 C -0.217 4.217
10 C -0.029 4.029
11 C 0.028 3.972
12 C -0.490 4.490
13 H 0.095 0.905
14 C -0.141 4.141
15 N -0.444 5.444
16 Si 0.734 3.266
17 H -0.194 1.194
18 H -0.205 1.205
19 H -0.188 1.188
20 C -0.232 4.232
21 N -0.235 5.235
22 H 0.228 0.772
23 H 0.076 0.924
24 H 0.084 0.916
25 H 0.078 0.922
26 H 0.220 0.780
27 H 0.092 0.908
28 H 0.076 0.924
29 H 0.040 0.960
30 H 0.070 0.930
31 H 0.142 0.858
32 H 0.157 0.843
33 H 0.090 0.910
34 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -5.349 6.187 -3.018 8.718
hybrid contribution 0.392 -1.281 -0.925 1.628
sum -4.957 4.906 -3.942 8.011
Atomic orbital electron populations
1.22491 0.96845 1.02393 1.02337 1.21982 0.92392 0.96774 0.84871
0.88678 1.86545 1.77427 1.28988 1.44230 1.22336 0.97656 1.00520
0.97540 1.21406 0.93352 0.98350 0.92893 1.73399 1.29149 1.13859
1.25615 1.21234 0.90096 0.89758 0.84446 1.21436 1.07200 0.98153
0.94918 1.22951 0.90248 0.91019 0.98698 1.18045 0.95737 0.94434
0.89017 1.19064 1.22642 1.01340 1.05913 0.90495 1.25762 0.95743
0.98125 0.94479 1.69861 1.27998 1.30933 1.15653 0.86290 0.81520
0.79206 0.79539 1.19445 1.20506 1.18827 1.21147 1.08007 0.95625
0.98375 1.41891 1.46563 1.26785 1.08265 0.77160 0.92440 0.91618
0.92201 0.78008 0.90848 0.92370 0.95961 0.93021 0.85775 0.84342
0.90965 0.85870
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.86 9.53 37.16 0.35 -1.51 16
2 C 0.10 1.23 3.59 -26.73 -0.10 1.14 16
3 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16
4 O -0.57 -7.51 12.87 -35.23 -0.45 -7.96 16
5 C -0.14 -2.13 5.22 -26.73 -0.14 -2.27 16
6 C 0.07 1.29 6.23 -4.04 -0.03 1.26 16
7 N -0.68 -14.66 10.57 -58.92 -0.62 -15.28 16
8 C 0.41 9.13 7.62 -154.53 -1.18 7.96 16
9 C -0.20 -4.44 10.22 -37.36 -0.38 -4.82 16
10 C -0.01 -0.14 8.86 -37.19 -0.33 -0.47 16
11 C 0.03 0.85 5.71 -105.03 -0.60 0.25 16
12 C -0.46 -11.41 9.02 -37.98 -0.34 -11.75 16
13 H 0.08 1.85 7.91 -52.48 -0.42 1.44 16
14 C 0.07 1.76 5.17 -17.36 -0.09 1.67 16
15 N -0.82 -20.03 10.84 55.53 0.60 -19.43 16
16 Si 0.91 18.03 29.60 -169.99 -5.03 13.00 16
17 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16
18 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16
19 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16
20 C -0.11 -2.44 10.93 -15.98 -0.17 -2.62 16
21 N -0.62 -13.01 5.17 -10.30 -0.05 -13.06 16
22 H 0.39 7.38 6.10 -40.82 -0.25 7.13 16
23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
26 H 0.37 3.91 9.05 45.56 0.41 4.32 16
27 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16
28 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16
29 H 0.02 0.40 5.04 -51.93 -0.26 0.13 16
30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
31 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16
32 H 0.14 3.35 6.18 -52.49 -0.32 3.02 16
33 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16
34 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16
LS Contribution 288.15 15.07 4.34 4.34
Total: -1.00 -27.09 288.15 -7.99 -35.08
By element:
Atomic # 1 Polarization: 18.24 SS G_CDS: -3.78 Total: 14.46 kcal
Atomic # 6 Polarization: -8.16 SS G_CDS: -3.00 Total: -11.16 kcal
Atomic # 7 Polarization: -47.69 SS G_CDS: -0.07 Total: -47.77 kcal
Atomic # 8 Polarization: -7.51 SS G_CDS: -0.45 Total: -7.96 kcal
Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal
Total LS contribution 4.34 Total: 4.34 kcal
Total: -27.09 -7.99 -35.08 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379947050.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.008 kcal
(2) G-P(sol) polarization free energy of solvation -27.090 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.082 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.085 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.076 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds