Wall clock time and date at job start Mon Mar 30 2020 03:39:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08996 * 109.47243 * 2 1
4 4 O 1.42900 * 109.46883 * 239.99930 * 2 1 3
5 5 C 1.52998 * 109.46852 * 120.00143 * 2 1 3
6 6 C 1.53006 * 109.47171 * 184.99774 * 5 2 1
7 7 N 1.46497 * 109.46923 * 179.97438 * 6 5 2
8 8 C 1.31326 * 119.99722 * 114.87939 * 7 6 5
9 9 C 1.46255 * 119.88385 * 186.50367 * 8 7 6
10 10 C 1.35434 * 119.08946 * 179.97438 * 9 8 7
11 11 C 1.46646 * 118.84390 * 0.02562 * 10 9 8
12 12 C 1.41119 * 120.13777 * 180.02562 * 11 10 9
13 13 H 1.08010 * 119.99857 * 202.23889 * 12 11 10
14 14 C 1.39612 * 120.00120 * 22.23686 * 12 11 10
15 15 N 1.31073 * 119.99910 * 18.63287 * 14 12 11
16 16 Si 1.86804 * 120.00367 * 198.62927 * 14 12 11
17 17 H 1.48500 * 109.47157 * 89.99759 * 16 14 12
18 18 H 1.48496 * 109.47517 * 210.00437 * 16 14 12
19 19 H 1.48502 * 109.46898 * 330.00222 * 16 14 12
20 20 C 1.39254 * 119.72604 * 359.97438 * 11 10 9
21 21 N 1.34552 * 120.89785 * 359.73960 * 20 11 10
22 22 H 0.96992 * 119.39787 * 180.25862 * 21 20 11
23 23 H 1.08996 * 109.47243 * 179.97438 * 1 2 3
24 24 H 1.09001 * 109.47056 * 300.00303 * 1 2 3
25 25 H 1.09001 * 109.46574 * 59.99570 * 1 2 3
26 26 H 0.96699 * 114.00281 * 300.00245 * 4 2 1
27 27 H 1.08999 * 109.47520 * 304.99552 * 5 2 1
28 28 H 1.09000 * 109.47597 * 64.99825 * 5 2 1
29 29 H 1.08999 * 109.46717 * 300.00270 * 6 5 2
30 30 H 1.08999 * 109.46497 * 60.00011 * 6 5 2
31 31 H 1.07999 * 120.45306 * 359.95782 * 9 8 7
32 32 H 1.07996 * 120.58204 * 179.97438 * 10 9 8
33 33 H 0.96996 * 119.99759 * 179.97438 * 15 14 12
34 34 H 1.08000 * 119.55740 * 180.02562 * 20 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 8 2.0063 -0.6737 -1.1668
5 6 2.0400 -0.7213 1.2492
6 6 3.5649 -0.6134 1.3137
7 7 4.0530 -1.3035 2.5102
8 6 4.8060 -2.3728 2.3902
9 6 5.1741 -3.1419 3.5784
10 6 5.9508 -4.2422 3.4360
11 6 6.3969 -4.6242 2.0923
12 6 7.2066 -5.7659 1.9124
13 1 7.8225 -5.8576 1.0298
14 6 7.2116 -6.7769 2.8752
15 7 6.2313 -6.8623 3.7410
16 14 8.6155 -8.0081 2.9296
17 1 9.6883 -7.4966 3.8199
18 1 8.1160 -9.3057 3.4510
19 1 9.1582 -8.2007 1.5607
20 6 6.0173 -3.8562 0.9944
21 7 5.2406 -2.7683 1.1476
22 1 4.9861 -2.2513 0.3674
23 1 -0.3633 -1.0276 -0.0005
24 1 -0.3633 0.5139 0.8900
25 1 -0.3632 0.5139 -0.8900
26 1 1.7210 -1.5952 -1.2329
27 1 1.6054 -0.2618 2.1370
28 1 1.7516 -1.7715 1.2056
29 1 3.9994 -1.0729 0.4260
30 1 3.8532 0.4369 1.3574
31 1 4.8314 -2.8365 4.5560
32 1 6.2374 -4.8277 4.2971
33 1 6.2346 -7.5649 4.4097
34 1 6.3471 -4.1403 0.0060
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000379947050.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:39:58
Heat of formation + Delta-G solvation = -32.841331 kcal
Electronic energy + Delta-G solvation = -16096.347769 eV
Core-core repulsion = 13414.325361 eV
Total energy + Delta-G solvation = -2682.022408 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.47077 -38.84641 -36.53896 -34.96370 -33.25821 -32.91145 -31.02909 -29.25435
-26.30394 -25.05552 -23.18937 -22.44579 -21.67494 -20.03811 -17.95898 -17.31087
-17.25483 -16.68210 -16.56424 -16.39284 -15.19422 -15.07176 -14.90202 -14.40207
-14.15258 -13.96661 -13.58311 -13.12413 -12.90965 -12.77507 -12.72699 -12.48255
-12.13729 -11.90949 -11.71216 -11.57032 -11.17546 -11.03288 -10.66489 -10.30304
-9.92394 -8.61165 -8.05698 -5.98523 0.63328 1.20535 1.47294 1.58138
1.64558 2.28900 2.66090 2.68447 3.42599 3.54271 3.69786 3.96048
4.10201 4.19905 4.38258 4.44785 4.59463 4.66984 4.74656 4.88416
4.89419 4.99372 5.08935 5.18830 5.23211 5.33776 5.36637 5.58437
5.70056 5.91610 6.37944 6.45872 6.75722 6.77787 6.99516 7.11746
7.64257 8.46129
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.049943 B = 0.004710 C = 0.004568
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 560.508899 B = 5944.002224 C = 6127.573150
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.105 3.895
3 H 0.099 0.901
4 O -0.580 6.580
5 C -0.132 4.132
6 C 0.065 3.935
7 N -0.688 5.688
8 C 0.392 3.608
9 C -0.197 4.197
10 C -0.019 4.019
11 C 0.000 4.000
12 C -0.488 4.488
13 H 0.077 0.923
14 C 0.036 3.964
15 N -0.846 5.846
16 Si 0.978 3.022
17 H -0.266 1.266
18 H -0.275 1.275
19 H -0.261 1.261
20 C -0.095 4.095
21 N -0.610 5.610
22 H 0.403 0.597
23 H 0.060 0.940
24 H 0.073 0.927
25 H 0.069 0.931
26 H 0.384 0.616
27 H 0.073 0.927
28 H 0.047 0.953
29 H 0.025 0.975
30 H 0.057 0.943
31 H 0.136 0.864
32 H 0.130 0.870
33 H 0.285 0.715
34 H 0.141 0.859
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.594 5.661 -4.480 9.133
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C 0.046 3.954
3 H 0.117 0.883
4 O -0.388 6.388
5 C -0.171 4.171
6 C -0.066 4.066
7 N -0.427 5.427
8 C 0.129 3.871
9 C -0.219 4.219
10 C -0.042 4.042
11 C -0.007 4.007
12 C -0.520 4.520
13 H 0.095 0.905
14 C -0.176 4.176
15 N -0.475 5.475
16 Si 0.800 3.200
17 H -0.191 1.191
18 H -0.200 1.200
19 H -0.185 1.185
20 C -0.219 4.219
21 N -0.231 5.231
22 H 0.242 0.758
23 H 0.079 0.921
24 H 0.092 0.908
25 H 0.088 0.912
26 H 0.233 0.767
27 H 0.092 0.908
28 H 0.066 0.934
29 H 0.043 0.957
30 H 0.076 0.924
31 H 0.153 0.847
32 H 0.148 0.852
33 H 0.096 0.904
34 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -5.783 6.617 -3.797 9.573
hybrid contribution 0.429 -1.263 -0.721 1.516
sum -5.354 5.354 -4.518 8.817
Atomic orbital electron populations
1.22421 0.94816 1.02938 1.03259 1.21947 0.93904 0.96345 0.83249
0.88328 1.86519 1.77873 1.30040 1.44327 1.22248 0.95358 1.00329
0.99142 1.21582 0.95315 0.98109 0.91593 1.73339 1.28080 1.13261
1.27993 1.21260 0.90812 0.90321 0.84721 1.21620 1.06654 0.97810
0.95831 1.22879 0.91282 0.91615 0.98429 1.18347 0.97068 0.95441
0.89863 1.19288 1.23651 1.02218 1.06854 0.90499 1.26502 0.97649
0.99608 0.93840 1.69909 1.29369 1.31886 1.16302 0.85254 0.78345
0.76902 0.79500 1.19104 1.19980 1.18503 1.21391 1.06741 0.95150
0.98647 1.41837 1.46255 1.26537 1.08471 0.75824 0.92120 0.90757
0.91226 0.76732 0.90845 0.93397 0.95711 0.92428 0.84664 0.85237
0.90435 0.84166
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.13 9.53 71.98 0.69 -2.44 16
2 C 0.10 2.37 3.59 30.59 0.11 2.48 16
3 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16
4 O -0.58 -14.14 12.87 -148.98 -1.92 -16.06 16
5 C -0.13 -3.74 5.22 30.60 0.16 -3.58 16
6 C 0.06 2.23 6.23 86.38 0.54 2.77 16
7 N -0.69 -28.88 10.57 -340.33 -3.60 -32.48 16
8 C 0.39 17.36 7.62 135.77 1.03 18.40 16
9 C -0.20 -9.00 10.22 23.71 0.24 -8.76 16
10 C -0.02 -0.91 8.86 23.82 0.21 -0.69 16
11 C 0.00 -0.02 5.71 -20.13 -0.11 -0.13 16
12 C -0.49 -24.56 9.02 23.31 0.21 -24.35 16
13 H 0.08 3.72 7.91 -2.91 -0.02 3.70 16
14 C 0.04 1.72 5.17 85.14 0.44 2.16 16
15 N -0.85 -41.99 10.84 21.78 0.24 -41.75 16
16 Si 0.98 36.83 29.60 68.60 2.03 38.86 16
17 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16
18 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16
19 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16
20 C -0.10 -4.26 10.93 84.52 0.92 -3.34 16
21 N -0.61 -25.23 5.17 -186.49 -0.96 -26.19 16
22 H 0.40 14.61 6.10 -92.71 -0.57 14.04 16
23 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16
24 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16
25 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16
26 H 0.38 7.30 9.05 -74.06 -0.67 6.63 16
27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16
28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16
29 H 0.02 0.84 5.04 -2.39 -0.01 0.83 16
30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
31 H 0.14 5.70 8.06 -2.91 -0.02 5.68 16
32 H 0.13 6.46 6.18 -2.91 -0.02 6.45 16
33 H 0.29 12.95 8.30 -92.71 -0.77 12.18 16
34 H 0.14 5.69 8.06 -2.91 -0.02 5.66 16
Total: -1.00 -56.52 288.15 0.11 -56.41
By element:
Atomic # 1 Polarization: 38.83 SS G_CDS: -0.12 Total: 38.71 kcal
Atomic # 6 Polarization: -21.93 SS G_CDS: 4.44 Total: -17.49 kcal
Atomic # 7 Polarization: -96.10 SS G_CDS: -4.32 Total: -100.43 kcal
Atomic # 8 Polarization: -14.14 SS G_CDS: -1.92 Total: -16.06 kcal
Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal
Total: -56.52 0.11 -56.41 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379947050.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 23.573 kcal
(2) G-P(sol) polarization free energy of solvation -56.522 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.949 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.414 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.841 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds