Wall clock time and date at job start Mon Mar 30 2020 03:43:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08996 * 109.47566 * 2 1
4 4 C 1.50709 * 109.47034 * 239.99563 * 2 1 3
5 5 H 1.07999 * 120.00277 * 275.00554 * 4 2 1
6 6 C 1.37882 * 119.99354 * 95.00400 * 4 2 1
7 7 N 1.31517 * 119.99420 * 184.91356 * 6 4 2
8 8 Si 1.86795 * 120.00168 * 4.91444 * 6 4 2
9 9 H 1.48499 * 109.47173 * 84.83106 * 8 6 4
10 10 H 1.48500 * 109.47139 * 204.82670 * 8 6 4
11 11 H 1.48494 * 109.47269 * 324.83031 * 8 6 4
12 12 N 1.46903 * 109.46971 * 120.00534 * 2 1 3
13 13 C 1.46908 * 110.99357 * 274.99683 * 12 2 1
14 14 C 1.52996 * 109.46611 * 180.02562 * 13 12 2
15 15 H 1.08996 * 109.47531 * 60.00195 * 14 13 12
16 16 O 1.42901 * 109.47509 * 299.99833 * 14 13 12
17 17 C 1.50707 * 109.46827 * 179.97438 * 14 13 12
18 18 C 1.38651 * 120.78975 * 264.99846 * 17 14 13
19 19 C 1.38202 * 119.16239 * 180.02562 * 18 17 14
20 20 N 1.31864 * 120.76604 * 0.02562 * 19 18 17
21 21 C 1.31871 * 121.72617 * 359.97438 * 20 19 18
22 22 C 1.38209 * 120.76407 * 0.02562 * 21 20 19
23 23 H 1.09005 * 109.47139 * 55.05220 * 1 2 3
24 24 H 1.08999 * 109.47647 * 175.05348 * 1 2 3
25 25 H 1.08999 * 109.47162 * 295.05282 * 1 2 3
26 26 H 0.97000 * 119.99068 * 179.97438 * 7 6 4
27 27 H 1.00897 * 111.00447 * 151.04835 * 12 2 1
28 28 H 1.08996 * 109.47013 * 60.00003 * 13 12 2
29 29 H 1.09001 * 109.46615 * 299.99835 * 13 12 2
30 30 H 0.96709 * 113.99504 * 300.00532 * 16 14 13
31 31 H 1.08005 * 120.41641 * 359.97438 * 18 17 14
32 32 H 1.07996 * 119.61529 * 179.97438 * 19 18 17
33 33 H 1.08001 * 119.61964 * 179.97438 * 21 20 19
34 34 H 1.08000 * 120.42105 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7105 -1.2305
5 1 2.1354 -1.7856 -1.2290
6 6 2.3603 0.0120 -2.3581
7 7 2.7060 -0.6133 -3.4622
8 14 2.3136 1.8790 -2.3174
9 1 3.5991 2.3947 -1.7821
10 1 2.1060 2.3990 -3.6928
11 1 1.1986 2.3274 -1.4451
12 7 2.0196 -0.6926 1.1994
13 6 2.0824 0.2225 2.3469
14 6 2.5961 -0.5330 3.5741
15 1 3.5916 -0.9264 3.3683
16 8 1.7098 -1.6130 3.8742
17 6 2.6612 0.4060 4.7511
18 6 3.8415 1.0574 5.0750
19 6 3.8634 1.9107 6.1619
20 7 2.7796 2.1077 6.8868
21 6 1.6400 1.5053 6.6082
22 6 1.5424 0.6381 5.5365
23 1 -0.3634 0.5887 -0.8424
24 1 -0.3634 -1.0238 -0.0886
25 1 -0.3633 0.4352 0.9310
26 1 2.9363 -0.1049 -4.2556
27 1 2.9172 -1.1206 1.0288
28 1 1.0870 0.6163 2.5525
29 1 2.7589 1.0461 2.1181
30 1 0.8038 -1.3360 4.0682
31 1 4.7328 0.8992 4.4859
32 1 4.7789 2.4216 6.4210
33 1 0.7733 1.6912 7.2251
34 1 0.6062 0.1481 5.3131
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000380062418.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:43:52
Heat of formation + Delta-G solvation = -18.506758 kcal
Electronic energy + Delta-G solvation = -16324.830804 eV
Core-core repulsion = 13643.429990 eV
Total energy + Delta-G solvation = -2681.400814 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-40.43600 -37.70041 -35.53506 -32.89999 -32.31045 -31.33845 -30.04336 -26.97867
-25.28866 -23.63995 -23.29517 -21.35686 -19.75991 -17.71952 -17.09813 -16.69049
-15.77857 -15.75736 -15.06204 -14.61087 -14.12246 -13.98675 -13.80963 -13.46926
-13.35714 -12.58631 -12.23036 -12.03564 -11.82429 -11.26970 -11.07851 -11.01600
-10.70140 -10.40058 -10.26319 -9.84621 -9.65776 -9.48536 -9.31502 -9.05008
-8.64781 -7.49254 -6.16756 -4.17679 0.97352 1.06824 3.19111 3.29053
3.30207 3.63732 4.27969 4.31442 4.32208 4.46166 4.65061 4.91166
4.99640 5.10588 5.18767 5.30532 5.37889 5.50261 5.59364 5.81872
5.88118 5.97634 6.26447 6.36083 6.52463 6.59047 6.76540 6.81554
7.34710 7.56582 7.69201 7.79992 7.87787 8.32118 8.59177 8.93314
9.46977 10.96276
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.034636 B = 0.005587 C = 0.005286
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 808.213148 B = 5010.077868 C = 5295.724715
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C 0.179 3.821
3 H 0.002 0.998
4 C -0.519 4.519
5 H 0.081 0.919
6 C 0.074 3.926
7 N -0.894 5.894
8 Si 0.875 3.125
9 H -0.278 1.278
10 H -0.287 1.287
11 H -0.266 1.266
12 N -0.673 5.673
13 C 0.032 3.968
14 C 0.148 3.852
15 H 0.109 0.891
16 O -0.537 6.537
17 C -0.064 4.064
18 C -0.165 4.165
19 C 0.098 3.902
20 N -0.491 5.491
21 C 0.099 3.901
22 C -0.165 4.165
23 H 0.040 0.960
24 H 0.053 0.947
25 H 0.018 0.982
26 H 0.265 0.735
27 H 0.342 0.658
28 H 0.068 0.932
29 H 0.029 0.971
30 H 0.371 0.629
31 H 0.136 0.864
32 H 0.155 0.845
33 H 0.155 0.845
34 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.373 4.600 17.201 17.810
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.071 3.929
3 H 0.020 0.980
4 C -0.558 4.558
5 H 0.099 0.901
6 C -0.129 4.129
7 N -0.532 5.532
8 Si 0.703 3.297
9 H -0.204 1.204
10 H -0.213 1.213
11 H -0.191 1.191
12 N -0.305 5.305
13 C -0.098 4.098
14 C 0.088 3.912
15 H 0.127 0.873
16 O -0.341 6.341
17 C -0.073 4.073
18 C -0.185 4.185
19 C -0.058 4.058
20 N -0.201 5.201
21 C -0.058 4.058
22 C -0.185 4.185
23 H 0.059 0.941
24 H 0.072 0.928
25 H 0.037 0.963
26 H 0.075 0.925
27 H 0.160 0.840
28 H 0.086 0.914
29 H 0.047 0.953
30 H 0.218 0.782
31 H 0.154 0.846
32 H 0.173 0.827
33 H 0.173 0.827
34 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -0.363 4.588 17.762 18.349
hybrid contribution 0.277 1.455 -1.049 1.815
sum -0.086 6.043 16.713 17.772
Atomic orbital electron populations
1.21838 0.98058 1.00787 0.97581 1.19589 0.92503 0.92369 0.88402
0.98006 1.21073 1.43725 0.95964 0.94995 0.90113 1.25031 0.94390
0.98125 0.95348 1.69902 1.45858 1.35801 1.01638 0.86901 0.78901
0.86631 0.77314 1.20384 1.21291 1.19101 1.60636 1.33288 1.31967
1.04634 1.22607 1.00318 0.94675 0.92242 1.20915 0.95338 0.85794
0.89149 0.87287 1.86652 1.23056 1.32593 1.91835 1.21221 0.93611
0.95953 0.96510 1.22048 0.98730 0.98617 0.99091 1.22745 0.96710
0.95113 0.91282 1.67666 0.99606 1.23090 1.29689 1.22725 0.95687
0.92456 0.94920 1.21920 0.99290 1.00298 0.96996 0.94081 0.92831
0.96301 0.92508 0.83959 0.91389 0.95333 0.78190 0.84563 0.82736
0.82749 0.84783
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.67 9.42 37.16 0.35 -2.32 16
2 C 0.18 4.15 2.26 -68.86 -0.16 3.99 16
3 H 0.00 0.05 4.95 -51.93 -0.26 -0.20 16
4 C -0.52 -14.23 8.84 -34.43 -0.30 -14.54 16
5 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16
6 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16
7 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16
8 Si 0.88 21.18 26.99 -169.99 -4.59 16.59 16
9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16
11 H -0.27 -6.23 6.82 56.52 0.39 -5.84 16
12 N -0.67 -13.33 6.17 -107.95 -0.67 -14.00 16
13 C 0.03 0.51 5.13 -3.82 -0.02 0.49 16
14 C 0.15 1.97 3.45 -27.88 -0.10 1.87 16
15 H 0.11 1.44 8.07 -51.93 -0.42 1.02 16
16 O -0.54 -7.48 13.01 -35.23 -0.46 -7.94 16
17 C -0.06 -0.76 5.04 -104.31 -0.53 -1.28 16
18 C -0.16 -1.81 9.80 -39.44 -0.39 -2.20 16
19 C 0.10 1.06 11.18 -17.55 -0.20 0.87 16
20 N -0.49 -5.96 10.36 -13.25 -0.14 -6.10 16
21 C 0.10 1.05 11.18 -17.55 -0.20 0.85 16
22 C -0.17 -1.75 9.41 -39.44 -0.37 -2.12 16
23 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16
24 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16
25 H 0.02 0.35 7.35 -51.93 -0.38 -0.04 16
26 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
27 H 0.34 6.91 8.35 -39.29 -0.33 6.58 16
28 H 0.07 1.06 7.36 -51.93 -0.38 0.68 16
29 H 0.03 0.47 8.06 -51.93 -0.42 0.05 16
30 H 0.37 4.02 7.49 45.56 0.34 4.36 16
31 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16
32 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16
33 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16
34 H 0.13 1.12 6.74 -52.49 -0.35 0.77 16
LS Contribution 287.90 15.07 4.34 4.34
Total: -1.00 -31.50 287.90 -6.62 -38.13
By element:
Atomic # 1 Polarization: 11.31 SS G_CDS: -3.89 Total: 7.42 kcal
Atomic # 6 Polarization: -10.41 SS G_CDS: -2.00 Total: -12.41 kcal
Atomic # 7 Polarization: -46.09 SS G_CDS: -0.03 Total: -46.12 kcal
Atomic # 8 Polarization: -7.48 SS G_CDS: -0.46 Total: -7.94 kcal
Atomic # 14 Polarization: 21.18 SS G_CDS: -4.59 Total: 16.59 kcal
Total LS contribution 4.34 Total: 4.34 kcal
Total: -31.50 -6.62 -38.13 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000380062418.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.618 kcal
(2) G-P(sol) polarization free energy of solvation -31.502 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.883 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.507 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds