Wall clock time and date at job start Mon Mar 30 2020 03:43:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08996 * 109.47566 * 2 1
4 4 C 1.50709 * 109.47034 * 239.99563 * 2 1 3
5 5 H 1.07999 * 120.00277 * 275.00554 * 4 2 1
6 6 C 1.37882 * 119.99354 * 95.00400 * 4 2 1
7 7 N 1.31517 * 119.99420 * 184.91356 * 6 4 2
8 8 Si 1.86795 * 120.00168 * 4.91444 * 6 4 2
9 9 H 1.48499 * 109.47173 * 84.83106 * 8 6 4
10 10 H 1.48500 * 109.47139 * 204.82670 * 8 6 4
11 11 H 1.48494 * 109.47269 * 324.83031 * 8 6 4
12 12 N 1.46903 * 109.46971 * 120.00534 * 2 1 3
13 13 C 1.46908 * 110.99357 * 274.99683 * 12 2 1
14 14 C 1.52996 * 109.46611 * 180.02562 * 13 12 2
15 15 H 1.08996 * 109.47531 * 60.00195 * 14 13 12
16 16 O 1.42901 * 109.47509 * 299.99833 * 14 13 12
17 17 C 1.50707 * 109.46827 * 179.97438 * 14 13 12
18 18 C 1.38651 * 120.78975 * 264.99846 * 17 14 13
19 19 C 1.38202 * 119.16239 * 180.02562 * 18 17 14
20 20 N 1.31864 * 120.76604 * 0.02562 * 19 18 17
21 21 C 1.31871 * 121.72617 * 359.97438 * 20 19 18
22 22 C 1.38209 * 120.76407 * 0.02562 * 21 20 19
23 23 H 1.09005 * 109.47139 * 55.05220 * 1 2 3
24 24 H 1.08999 * 109.47647 * 175.05348 * 1 2 3
25 25 H 1.08999 * 109.47162 * 295.05282 * 1 2 3
26 26 H 0.97000 * 119.99068 * 179.97438 * 7 6 4
27 27 H 1.00897 * 111.00447 * 151.04835 * 12 2 1
28 28 H 1.08996 * 109.47013 * 60.00003 * 13 12 2
29 29 H 1.09001 * 109.46615 * 299.99835 * 13 12 2
30 30 H 0.96709 * 113.99504 * 300.00532 * 16 14 13
31 31 H 1.08005 * 120.41641 * 359.97438 * 18 17 14
32 32 H 1.07996 * 119.61529 * 179.97438 * 19 18 17
33 33 H 1.08001 * 119.61964 * 179.97438 * 21 20 19
34 34 H 1.08000 * 120.42105 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7105 -1.2305
5 1 2.1354 -1.7856 -1.2290
6 6 2.3603 0.0120 -2.3581
7 7 2.7060 -0.6133 -3.4622
8 14 2.3136 1.8790 -2.3174
9 1 3.5991 2.3947 -1.7821
10 1 2.1060 2.3990 -3.6928
11 1 1.1986 2.3274 -1.4451
12 7 2.0196 -0.6926 1.1994
13 6 2.0824 0.2225 2.3469
14 6 2.5961 -0.5330 3.5741
15 1 3.5916 -0.9264 3.3683
16 8 1.7098 -1.6130 3.8742
17 6 2.6612 0.4060 4.7511
18 6 3.8415 1.0574 5.0750
19 6 3.8634 1.9107 6.1619
20 7 2.7796 2.1077 6.8868
21 6 1.6400 1.5053 6.6082
22 6 1.5424 0.6381 5.5365
23 1 -0.3634 0.5887 -0.8424
24 1 -0.3634 -1.0238 -0.0886
25 1 -0.3633 0.4352 0.9310
26 1 2.9363 -0.1049 -4.2556
27 1 2.9172 -1.1206 1.0288
28 1 1.0870 0.6163 2.5525
29 1 2.7589 1.0461 2.1181
30 1 0.8038 -1.3360 4.0682
31 1 4.7328 0.8992 4.4859
32 1 4.7789 2.4216 6.4210
33 1 0.7733 1.6912 7.2251
34 1 0.6062 0.1481 5.3131
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000380062418.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:43:52
Heat of formation + Delta-G solvation = -43.238132 kcal
Electronic energy + Delta-G solvation = -16325.903237 eV
Core-core repulsion = 13643.429990 eV
Total energy + Delta-G solvation = -2682.473247 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.27902 -38.86540 -37.10788 -34.45190 -33.69636 -32.12332 -31.62105 -28.26087
-27.25400 -24.57617 -24.33933 -22.38537 -21.56292 -19.20504 -18.56477 -17.66765
-17.15817 -16.56366 -16.29304 -16.01084 -15.57433 -15.13208 -14.91999 -14.62591
-14.57978 -14.44249 -13.87806 -13.36242 -12.90619 -12.75885 -12.67429 -12.55142
-12.29790 -12.13608 -11.83960 -11.33287 -11.05526 -10.79898 -10.52855 -10.36323
-10.09345 -9.09008 -8.33115 -6.38770 0.19541 0.21536 1.29418 1.32178
1.42377 2.29394 2.80723 2.99287 3.26173 3.48480 3.60062 3.83356
3.92255 4.05219 4.15120 4.24335 4.26326 4.51840 4.66149 4.68679
4.80890 4.86922 4.90576 4.96581 5.01148 5.10551 5.38018 5.48983
5.69074 5.75403 6.00789 6.50198 6.65718 6.76465 6.86810 7.00870
7.30559 8.83756
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.034636 B = 0.005587 C = 0.005286
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 808.213148 B = 5010.077868 C = 5295.724715
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C 0.182 3.818
3 H 0.003 0.997
4 C -0.522 4.522
5 H 0.036 0.964
6 C 0.017 3.983
7 N -0.944 5.944
8 Si 0.940 3.060
9 H -0.268 1.268
10 H -0.285 1.285
11 H -0.248 1.248
12 N -0.677 5.677
13 C 0.035 3.965
14 C 0.161 3.839
15 H 0.106 0.894
16 O -0.552 6.552
17 C -0.077 4.077
18 C -0.171 4.171
19 C 0.090 3.910
20 N -0.513 5.513
21 C 0.092 3.908
22 C -0.166 4.166
23 H 0.035 0.965
24 H 0.042 0.958
25 H 0.050 0.950
26 H 0.267 0.733
27 H 0.336 0.664
28 H 0.077 0.923
29 H 0.028 0.972
30 H 0.384 0.616
31 H 0.150 0.850
32 H 0.178 0.822
33 H 0.180 0.820
34 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.953 6.362 19.059 20.116
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.073 3.927
3 H 0.020 0.980
4 C -0.560 4.560
5 H 0.055 0.945
6 C -0.181 4.181
7 N -0.584 5.584
8 Si 0.764 3.236
9 H -0.194 1.194
10 H -0.211 1.211
11 H -0.172 1.172
12 N -0.308 5.308
13 C -0.095 4.095
14 C 0.101 3.899
15 H 0.124 0.876
16 O -0.359 6.359
17 C -0.086 4.086
18 C -0.191 4.191
19 C -0.066 4.066
20 N -0.223 5.223
21 C -0.065 4.065
22 C -0.186 4.186
23 H 0.054 0.946
24 H 0.061 0.939
25 H 0.069 0.931
26 H 0.076 0.924
27 H 0.154 0.846
28 H 0.095 0.905
29 H 0.046 0.954
30 H 0.233 0.767
31 H 0.167 0.833
32 H 0.195 0.805
33 H 0.197 0.803
34 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges -0.960 6.349 19.655 20.677
hybrid contribution 0.454 0.810 -1.559 1.815
sum -0.506 7.158 18.095 19.466
Atomic orbital electron populations
1.21741 0.96649 1.00410 0.99056 1.19473 0.93539 0.91826 0.87839
0.97959 1.21294 1.43354 0.94259 0.97125 0.94530 1.25880 0.94129
1.03353 0.94775 1.70053 1.47774 1.37952 1.02602 0.85846 0.79787
0.80259 0.77659 1.19368 1.21149 1.17188 1.60543 1.33035 1.32645
1.04548 1.22674 1.01034 0.94179 0.91638 1.20677 0.94942 0.85597
0.88682 0.87600 1.86628 1.24174 1.33230 1.91823 1.21128 0.94655
0.96328 0.96530 1.22263 0.99077 0.98397 0.99346 1.23137 0.97337
0.95100 0.91005 1.67707 1.00399 1.23828 1.30371 1.23179 0.96113
0.92015 0.95154 1.22176 0.99765 1.00044 0.96572 0.94628 0.93866
0.93065 0.92399 0.84621 0.90484 0.95382 0.76670 0.83256 0.80546
0.80287 0.82693
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.94 9.42 71.98 0.68 -4.26 16
2 C 0.18 8.21 2.26 44.17 0.10 8.31 16
3 H 0.00 0.13 4.95 -2.39 -0.01 0.11 16
4 C -0.52 -29.10 8.84 25.60 0.23 -28.88 16
5 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16
6 C 0.02 0.96 5.47 84.66 0.46 1.42 16
7 N -0.94 -57.98 13.96 21.45 0.30 -57.68 16
8 Si 0.94 43.13 26.99 68.60 1.85 44.98 16
9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16
10 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16
11 H -0.25 -10.58 6.82 99.48 0.68 -9.90 16
12 N -0.68 -26.09 6.17 -495.43 -3.06 -29.15 16
13 C 0.03 1.03 5.13 86.30 0.44 1.47 16
14 C 0.16 3.97 3.45 29.85 0.10 4.07 16
15 H 0.11 2.65 8.07 -2.39 -0.02 2.63 16
16 O -0.55 -14.30 13.01 -148.98 -1.94 -16.24 16
17 C -0.08 -1.66 5.04 -19.67 -0.10 -1.76 16
18 C -0.17 -3.40 9.80 22.36 0.22 -3.18 16
19 C 0.09 1.76 11.18 84.68 0.95 2.71 16
20 N -0.51 -11.32 10.36 -195.85 -2.03 -13.35 16
21 C 0.09 1.71 11.18 84.68 0.95 2.65 16
22 C -0.17 -3.06 9.41 22.36 0.21 -2.85 16
23 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16
24 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16
25 H 0.05 1.75 7.35 -2.39 -0.02 1.74 16
26 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16
27 H 0.34 13.59 8.35 -89.70 -0.75 12.84 16
28 H 0.08 2.15 7.36 -2.39 -0.02 2.13 16
29 H 0.03 0.85 8.06 -2.39 -0.02 0.83 16
30 H 0.38 7.35 7.49 -74.05 -0.55 6.79 16
31 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16
32 H 0.18 2.44 8.06 -2.91 -0.02 2.42 16
33 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16
34 H 0.16 2.07 6.74 -2.91 -0.02 2.05 16
Total: -1.00 -67.86 287.90 -0.86 -68.71
By element:
Atomic # 1 Polarization: 23.23 SS G_CDS: -0.22 Total: 23.01 kcal
Atomic # 6 Polarization: -24.53 SS G_CDS: 4.24 Total: -20.29 kcal
Atomic # 7 Polarization: -95.39 SS G_CDS: -4.79 Total: -100.17 kcal
Atomic # 8 Polarization: -14.30 SS G_CDS: -1.94 Total: -16.24 kcal
Atomic # 14 Polarization: 43.13 SS G_CDS: 1.85 Total: 44.98 kcal
Total: -67.86 -0.86 -68.71 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000380062418.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.474 kcal
(2) G-P(sol) polarization free energy of solvation -67.856 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.383 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.712 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.238 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds