Wall clock time and date at job start Mon Mar 30 2020 03:43:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08998 * 109.47046 * 2 1
4 4 C 1.50705 * 109.46905 * 119.99714 * 2 1 3
5 5 H 1.07997 * 119.99777 * 119.99988 * 4 2 1
6 6 C 1.37880 * 120.00042 * 299.99829 * 4 2 1
7 7 N 1.31510 * 120.00030 * 179.97438 * 6 4 2
8 8 Si 1.86800 * 119.99784 * 0.02562 * 6 4 2
9 9 H 1.48499 * 109.47535 * 90.00000 * 8 6 4
10 10 H 1.48502 * 109.46882 * 209.99822 * 8 6 4
11 11 H 1.48498 * 109.47291 * 329.99787 * 8 6 4
12 12 N 1.46900 * 109.47370 * 239.99471 * 2 1 3
13 13 C 1.46898 * 110.99589 * 84.99775 * 12 2 1
14 14 C 1.53001 * 109.46893 * 180.02562 * 13 12 2
15 15 H 1.08999 * 109.47164 * 60.00204 * 14 13 12
16 16 O 1.42903 * 109.47171 * 299.99938 * 14 13 12
17 17 C 1.50707 * 109.47316 * 180.02562 * 14 13 12
18 18 C 1.38650 * 120.79272 * 84.71505 * 17 14 13
19 19 C 1.38198 * 119.16162 * 179.75451 * 18 17 14
20 20 N 1.31869 * 120.76223 * 0.53955 * 19 18 17
21 21 C 1.31870 * 121.73197 * 359.73372 * 20 19 18
22 22 C 1.38209 * 120.75841 * 359.97438 * 21 20 19
23 23 H 1.09002 * 109.47337 * 300.00231 * 1 2 3
24 24 H 1.09004 * 109.47057 * 60.00289 * 1 2 3
25 25 H 1.09000 * 109.47144 * 180.02562 * 1 2 3
26 26 H 0.96998 * 120.00105 * 179.97438 * 7 6 4
27 27 H 1.00893 * 110.99943 * 208.95431 * 12 2 1
28 28 H 1.08999 * 109.47049 * 60.00398 * 13 12 2
29 29 H 1.08997 * 109.47646 * 300.00448 * 13 12 2
30 30 H 0.96700 * 114.00311 * 300.00378 * 16 14 13
31 31 H 1.08000 * 120.41463 * 0.02562 * 18 17 14
32 32 H 1.08000 * 119.61623 * 180.24810 * 19 18 17
33 33 H 1.07987 * 119.62261 * 180.02562 * 21 20 19
34 34 H 1.07995 * 120.41687 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2306
5 1 2.6532 -1.5885 1.1315
6 6 1.6992 -0.2392 2.4828
7 7 2.1371 -0.8594 3.5566
8 14 0.6247 1.2792 2.6540
9 1 -0.8029 0.8729 2.6997
10 1 0.9759 1.9953 3.9067
11 1 0.8470 2.1766 1.4919
12 7 2.0197 -0.6926 -1.1993
13 6 2.0825 0.2224 -2.3468
14 6 2.5951 -0.5334 -3.5744
15 1 1.9184 -1.3568 -3.8028
16 8 3.9000 -1.0499 -3.3051
17 6 2.6601 0.4054 -4.7515
18 6 3.7675 1.2149 -4.9535
19 6 3.7937 2.0596 -6.0469
20 7 2.7775 2.1085 -6.8860
21 6 1.7061 1.3573 -6.7222
22 6 1.6114 0.4843 -5.6550
23 1 -0.3634 0.5139 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 1.9031 -0.5278 4.4376
27 1 2.9173 -1.1205 -1.0286
28 1 2.7588 1.0460 -2.1182
29 1 1.0871 0.6162 -2.5525
30 1 4.5557 -0.3714 -3.0934
31 1 4.6009 1.1825 -4.2674
32 1 4.6543 2.6904 -6.2136
33 1 0.8938 1.4245 -7.4306
34 1 0.7315 -0.1286 -5.5264
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000380062500.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:43:56
Heat of formation + Delta-G solvation = -11.669601 kcal
Electronic energy + Delta-G solvation = -16316.912872 eV
Core-core repulsion = 13635.808539 eV
Total energy + Delta-G solvation = -2681.104333 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.46181 -37.83161 -35.61299 -32.96342 -32.34325 -31.35334 -30.09184 -27.19095
-25.15189 -23.64910 -23.33169 -21.35829 -19.96440 -17.76762 -16.93131 -16.69987
-15.82602 -15.79174 -15.27200 -14.69608 -14.16291 -14.02227 -13.81197 -13.52273
-13.38235 -12.83994 -12.20867 -12.13477 -11.72542 -11.50285 -11.33182 -10.91226
-10.71193 -10.36290 -10.15009 -9.69979 -9.63708 -9.42634 -9.32996 -9.05516
-8.65241 -7.59901 -6.13868 -4.14166 0.96095 1.05270 3.23031 3.32046
3.34705 3.62231 4.26123 4.29399 4.34207 4.37523 4.63760 4.89682
4.98806 5.12227 5.18052 5.25412 5.40230 5.44394 5.58952 5.79266
5.87406 5.95103 6.26207 6.33637 6.47319 6.51308 6.65089 6.73652
7.32023 7.51835 7.56396 7.78780 7.84899 8.29696 8.55866 8.91191
9.47900 10.99076
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.040381 B = 0.005255 C = 0.005042
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 693.224132 B = 5326.827415 C = 5552.138530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.182 3.818
3 H -0.001 1.001
4 C -0.521 4.521
5 H 0.080 0.920
6 C 0.072 3.928
7 N -0.897 5.897
8 Si 0.891 3.109
9 H -0.278 1.278
10 H -0.297 1.297
11 H -0.270 1.270
12 N -0.673 5.673
13 C 0.034 3.966
14 C 0.147 3.853
15 H 0.119 0.881
16 O -0.547 6.547
17 C -0.064 4.064
18 C -0.166 4.166
19 C 0.099 3.901
20 N -0.491 5.491
21 C 0.098 3.902
22 C -0.163 4.163
23 H 0.037 0.963
24 H 0.024 0.976
25 H 0.059 0.941
26 H 0.265 0.735
27 H 0.347 0.653
28 H 0.025 0.975
29 H 0.074 0.926
30 H 0.371 0.629
31 H 0.133 0.867
32 H 0.155 0.845
33 H 0.156 0.844
34 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.791 4.979 -17.318 18.037
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C 0.073 3.927
3 H 0.017 0.983
4 C -0.559 4.559
5 H 0.098 0.902
6 C -0.130 4.130
7 N -0.535 5.535
8 Si 0.722 3.278
9 H -0.204 1.204
10 H -0.225 1.225
11 H -0.195 1.195
12 N -0.306 5.306
13 C -0.097 4.097
14 C 0.087 3.913
15 H 0.137 0.863
16 O -0.352 6.352
17 C -0.073 4.073
18 C -0.186 4.186
19 C -0.057 4.057
20 N -0.200 5.200
21 C -0.059 4.059
22 C -0.183 4.183
23 H 0.056 0.944
24 H 0.043 0.957
25 H 0.078 0.922
26 H 0.075 0.925
27 H 0.167 0.833
28 H 0.043 0.957
29 H 0.092 0.908
30 H 0.219 0.781
31 H 0.151 0.849
32 H 0.173 0.827
33 H 0.173 0.827
34 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges -0.080 4.722 -18.099 18.704
hybrid contribution 0.269 1.371 1.331 1.930
sum 0.189 6.093 -16.768 17.841
Atomic orbital electron populations
1.22081 0.98700 1.01098 0.97687 1.19540 0.91786 0.92887 0.88460
0.98311 1.21094 1.32452 1.13853 0.88524 0.90234 1.24929 0.95662
0.96692 0.95745 1.69886 1.45454 1.40182 0.97947 0.86807 0.80756
0.83537 0.76746 1.20444 1.22470 1.19523 1.60447 1.33737 1.31740
1.04675 1.22569 1.00701 0.94357 0.92038 1.21022 0.85508 0.95015
0.89749 0.86293 1.86671 1.19299 1.37423 1.91819 1.21187 0.93920
0.95716 0.96450 1.21919 0.99255 0.97602 0.99842 1.22716 0.96543
0.96153 0.90313 1.67667 1.01114 1.22207 1.29035 1.22757 0.95586
0.91561 0.95971 1.22044 0.99657 1.00937 0.95678 0.94445 0.95688
0.92215 0.92520 0.83347 0.95699 0.90784 0.78140 0.84897 0.82748
0.82704 0.84431
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.05 8.89 37.16 0.33 -2.72 16
2 C 0.18 4.26 2.19 -68.86 -0.15 4.11 16
3 H 0.00 -0.02 6.86 -51.93 -0.36 -0.37 16
4 C -0.52 -14.46 9.17 -34.44 -0.32 -14.78 16
5 H 0.08 2.39 7.86 -52.49 -0.41 1.98 16
6 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16
7 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16
8 Si 0.89 21.90 24.37 -169.99 -4.14 17.76 16
9 H -0.28 -6.66 6.87 56.52 0.39 -6.28 16
10 H -0.30 -7.29 7.11 56.52 0.40 -6.88 16
11 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16
12 N -0.67 -13.34 6.30 -107.95 -0.68 -14.02 16
13 C 0.03 0.53 5.17 -3.82 -0.02 0.51 16
14 C 0.15 1.91 3.52 -27.88 -0.10 1.81 16
15 H 0.12 1.58 8.07 -51.93 -0.42 1.16 16
16 O -0.55 -7.33 12.49 -35.23 -0.44 -7.77 16
17 C -0.06 -0.74 5.03 -104.31 -0.53 -1.26 16
18 C -0.17 -1.75 9.41 -39.44 -0.37 -2.13 16
19 C 0.10 1.05 11.18 -17.55 -0.20 0.85 16
20 N -0.49 -5.86 10.36 -13.26 -0.14 -6.00 16
21 C 0.10 1.03 11.18 -17.55 -0.20 0.83 16
22 C -0.16 -1.73 9.80 -39.44 -0.39 -2.12 16
23 H 0.04 0.86 3.27 -51.93 -0.17 0.69 16
24 H 0.02 0.47 7.45 -51.93 -0.39 0.09 16
25 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16
26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
27 H 0.35 7.03 7.61 -39.30 -0.30 6.73 16
28 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16
29 H 0.07 1.16 7.44 -51.93 -0.39 0.77 16
30 H 0.37 3.80 7.49 45.56 0.34 4.14 16
31 H 0.13 1.12 6.74 -52.49 -0.35 0.77 16
32 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16
33 H 0.16 1.19 8.06 -52.49 -0.42 0.76 16
34 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16
LS Contribution 280.46 15.07 4.23 4.23
Total: -1.00 -31.81 280.46 -6.16 -37.97
By element:
Atomic # 1 Polarization: 10.88 SS G_CDS: -3.73 Total: 7.15 kcal
Atomic # 6 Polarization: -10.89 SS G_CDS: -2.03 Total: -12.92 kcal
Atomic # 7 Polarization: -46.36 SS G_CDS: -0.04 Total: -46.41 kcal
Atomic # 8 Polarization: -7.33 SS G_CDS: -0.44 Total: -7.77 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -4.14 Total: 17.76 kcal
Total LS contribution 4.23 Total: 4.23 kcal
Total: -31.81 -6.16 -37.97 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000380062500.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.298 kcal
(2) G-P(sol) polarization free energy of solvation -31.807 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.509 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.160 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.670 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds