Wall clock time and date at job start Mon Mar 30 2020 03:43:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08998 * 109.47046 * 2 1
4 4 C 1.50705 * 109.46905 * 119.99714 * 2 1 3
5 5 H 1.07997 * 119.99777 * 119.99988 * 4 2 1
6 6 C 1.37880 * 120.00042 * 299.99829 * 4 2 1
7 7 N 1.31510 * 120.00030 * 179.97438 * 6 4 2
8 8 Si 1.86800 * 119.99784 * 0.02562 * 6 4 2
9 9 H 1.48499 * 109.47535 * 90.00000 * 8 6 4
10 10 H 1.48502 * 109.46882 * 209.99822 * 8 6 4
11 11 H 1.48498 * 109.47291 * 329.99787 * 8 6 4
12 12 N 1.46900 * 109.47370 * 239.99471 * 2 1 3
13 13 C 1.46898 * 110.99589 * 84.99775 * 12 2 1
14 14 C 1.53001 * 109.46893 * 180.02562 * 13 12 2
15 15 H 1.08999 * 109.47164 * 60.00204 * 14 13 12
16 16 O 1.42903 * 109.47171 * 299.99938 * 14 13 12
17 17 C 1.50707 * 109.47316 * 180.02562 * 14 13 12
18 18 C 1.38650 * 120.79272 * 84.71505 * 17 14 13
19 19 C 1.38198 * 119.16162 * 179.75451 * 18 17 14
20 20 N 1.31869 * 120.76223 * 0.53955 * 19 18 17
21 21 C 1.31870 * 121.73197 * 359.73372 * 20 19 18
22 22 C 1.38209 * 120.75841 * 359.97438 * 21 20 19
23 23 H 1.09002 * 109.47337 * 300.00231 * 1 2 3
24 24 H 1.09004 * 109.47057 * 60.00289 * 1 2 3
25 25 H 1.09000 * 109.47144 * 180.02562 * 1 2 3
26 26 H 0.96998 * 120.00105 * 179.97438 * 7 6 4
27 27 H 1.00893 * 110.99943 * 208.95431 * 12 2 1
28 28 H 1.08999 * 109.47049 * 60.00398 * 13 12 2
29 29 H 1.08997 * 109.47646 * 300.00448 * 13 12 2
30 30 H 0.96700 * 114.00311 * 300.00378 * 16 14 13
31 31 H 1.08000 * 120.41463 * 0.02562 * 18 17 14
32 32 H 1.08000 * 119.61623 * 180.24810 * 19 18 17
33 33 H 1.07987 * 119.62261 * 180.02562 * 21 20 19
34 34 H 1.07995 * 120.41687 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2306
5 1 2.6532 -1.5885 1.1315
6 6 1.6992 -0.2392 2.4828
7 7 2.1371 -0.8594 3.5566
8 14 0.6247 1.2792 2.6540
9 1 -0.8029 0.8729 2.6997
10 1 0.9759 1.9953 3.9067
11 1 0.8470 2.1766 1.4919
12 7 2.0197 -0.6926 -1.1993
13 6 2.0825 0.2224 -2.3468
14 6 2.5951 -0.5334 -3.5744
15 1 1.9184 -1.3568 -3.8028
16 8 3.9000 -1.0499 -3.3051
17 6 2.6601 0.4054 -4.7515
18 6 3.7675 1.2149 -4.9535
19 6 3.7937 2.0596 -6.0469
20 7 2.7775 2.1085 -6.8860
21 6 1.7061 1.3573 -6.7222
22 6 1.6114 0.4843 -5.6550
23 1 -0.3634 0.5139 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 1.9031 -0.5278 4.4376
27 1 2.9173 -1.1205 -1.0286
28 1 2.7588 1.0460 -2.1182
29 1 1.0871 0.6162 -2.5525
30 1 4.5557 -0.3714 -3.0934
31 1 4.6009 1.1825 -4.2674
32 1 4.6543 2.6904 -6.2136
33 1 0.8938 1.4245 -7.4306
34 1 0.7315 -0.1286 -5.5264
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000380062500.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:43:55
Heat of formation + Delta-G solvation = -37.295499 kcal
Electronic energy + Delta-G solvation = -16318.024095 eV
Core-core repulsion = 13635.808539 eV
Total energy + Delta-G solvation = -2682.215555 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.29433 -38.97915 -37.19886 -34.48056 -33.73779 -32.12551 -31.70921 -28.46434
-27.12569 -24.58734 -24.36250 -22.37300 -21.77012 -19.02238 -18.58277 -17.67656
-17.37827 -16.57816 -16.40002 -16.05434 -15.61989 -15.16832 -15.06155 -14.72255
-14.53985 -14.42472 -14.04327 -13.41984 -13.14286 -12.78783 -12.63676 -12.58591
-12.30551 -12.07470 -11.51249 -11.38218 -11.09080 -10.80208 -10.53673 -10.37903
-10.09379 -9.19380 -8.32929 -6.37982 0.19592 0.21367 1.29769 1.33530
1.44250 2.28932 2.80669 3.02003 3.19827 3.42751 3.59838 3.80315
3.90540 4.03241 4.18001 4.24017 4.25352 4.48117 4.67032 4.68764
4.71541 4.80988 4.86744 4.91340 4.97941 5.00973 5.38056 5.47179
5.60817 5.75457 5.95335 6.47717 6.60219 6.68226 6.81183 7.00958
7.28775 8.83619
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.040381 B = 0.005255 C = 0.005042
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 693.224132 B = 5326.827415 C = 5552.138530
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.186 3.814
3 H -0.004 1.004
4 C -0.526 4.526
5 H 0.040 0.960
6 C 0.015 3.985
7 N -0.945 5.945
8 Si 0.953 3.047
9 H -0.266 1.266
10 H -0.297 1.297
11 H -0.251 1.251
12 N -0.677 5.677
13 C 0.036 3.964
14 C 0.160 3.840
15 H 0.116 0.884
16 O -0.562 6.562
17 C -0.077 4.077
18 C -0.170 4.170
19 C 0.091 3.909
20 N -0.513 5.513
21 C 0.091 3.909
22 C -0.166 4.166
23 H 0.031 0.969
24 H 0.057 0.943
25 H 0.052 0.948
26 H 0.267 0.733
27 H 0.341 0.659
28 H 0.028 0.972
29 H 0.080 0.920
30 H 0.384 0.616
31 H 0.151 0.849
32 H 0.178 0.822
33 H 0.180 0.820
34 H 0.155 0.845
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.133 6.523 -18.996 20.085
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.076 3.924
3 H 0.014 0.986
4 C -0.564 4.564
5 H 0.058 0.942
6 C -0.183 4.183
7 N -0.585 5.585
8 Si 0.780 3.220
9 H -0.192 1.192
10 H -0.225 1.225
11 H -0.176 1.176
12 N -0.309 5.309
13 C -0.094 4.094
14 C 0.101 3.899
15 H 0.134 0.866
16 O -0.369 6.369
17 C -0.086 4.086
18 C -0.190 4.190
19 C -0.065 4.065
20 N -0.223 5.223
21 C -0.065 4.065
22 C -0.186 4.186
23 H 0.049 0.951
24 H 0.076 0.924
25 H 0.071 0.929
26 H 0.076 0.924
27 H 0.160 0.840
28 H 0.046 0.954
29 H 0.098 0.902
30 H 0.233 0.767
31 H 0.168 0.832
32 H 0.195 0.805
33 H 0.197 0.803
34 H 0.173 0.827
Dipole moment (debyes) X Y Z Total
from point charges -0.999 6.270 -19.811 20.804
hybrid contribution 0.645 0.824 1.789 2.072
sum -0.354 7.094 -18.022 19.372
Atomic orbital electron populations
1.21997 0.97245 1.01106 0.98941 1.19387 0.92874 0.92101 0.88016
0.98647 1.21396 1.31564 1.12740 0.90739 0.94214 1.25797 0.97175
1.00002 0.95311 1.70034 1.47468 1.42383 0.98647 0.85786 0.79226
0.79772 0.77171 1.19156 1.22521 1.17560 1.60391 1.33480 1.32507
1.04525 1.22640 1.01335 0.93981 0.91408 1.20775 0.85202 0.94828
0.89116 0.86640 1.86642 1.19782 1.38554 1.91884 1.21098 0.94996
0.96100 0.96401 1.22154 0.99493 0.97139 1.00182 1.23127 0.97012
0.96362 0.90015 1.67707 1.01885 1.22951 1.29754 1.23188 0.95904
0.91069 0.96364 1.22278 0.99949 1.00986 0.95365 0.95081 0.92398
0.92933 0.92389 0.84022 0.95395 0.90204 0.76662 0.83184 0.80533
0.80308 0.82745
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.65 8.89 71.98 0.64 -5.01 16
2 C 0.19 8.47 2.19 44.17 0.10 8.57 16
3 H 0.00 -0.18 6.86 -2.39 -0.02 -0.20 16
4 C -0.53 -29.64 9.17 25.60 0.23 -29.40 16
5 H 0.04 2.49 7.86 -2.91 -0.02 2.46 16
6 C 0.02 0.87 5.45 84.66 0.46 1.33 16
7 N -0.95 -58.57 13.96 21.45 0.30 -58.27 16
8 Si 0.95 44.46 24.37 68.60 1.67 46.14 16
9 H -0.27 -11.81 6.87 99.48 0.68 -11.13 16
10 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16
11 H -0.25 -10.89 6.53 99.48 0.65 -10.24 16
12 N -0.68 -26.18 6.30 -495.45 -3.12 -29.30 16
13 C 0.04 1.07 5.17 86.30 0.45 1.51 16
14 C 0.16 3.89 3.52 29.85 0.10 4.00 16
15 H 0.12 2.88 8.07 -2.39 -0.02 2.86 16
16 O -0.56 -14.31 12.49 -148.98 -1.86 -16.17 16
17 C -0.08 -1.62 5.03 -19.67 -0.10 -1.72 16
18 C -0.17 -3.21 9.41 22.36 0.21 -3.00 16
19 C 0.09 1.73 11.18 84.68 0.95 2.67 16
20 N -0.51 -11.19 10.36 -195.85 -2.03 -13.22 16
21 C 0.09 1.70 11.18 84.68 0.95 2.64 16
22 C -0.17 -3.12 9.80 22.36 0.22 -2.90 16
23 H 0.03 1.33 3.27 -2.39 -0.01 1.32 16
24 H 0.06 2.02 7.45 -2.38 -0.02 2.00 16
25 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16
26 H 0.27 15.48 8.31 -92.71 -0.77 14.70 16
27 H 0.34 13.85 7.61 -89.70 -0.68 13.17 16
28 H 0.03 0.82 8.06 -2.39 -0.02 0.80 16
29 H 0.08 2.27 7.44 -2.39 -0.02 2.25 16
30 H 0.38 7.30 7.49 -74.06 -0.55 6.74 16
31 H 0.15 2.17 6.74 -2.91 -0.02 2.15 16
32 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16
33 H 0.18 2.26 8.06 -2.92 -0.02 2.24 16
34 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16
Total: -1.00 -68.28 280.46 -1.03 -69.31
By element:
Atomic # 1 Polarization: 23.01 SS G_CDS: -0.20 Total: 22.81 kcal
Atomic # 6 Polarization: -25.51 SS G_CDS: 4.21 Total: -21.30 kcal
Atomic # 7 Polarization: -95.94 SS G_CDS: -4.85 Total: -100.79 kcal
Atomic # 8 Polarization: -14.31 SS G_CDS: -1.86 Total: -16.17 kcal
Atomic # 14 Polarization: 44.46 SS G_CDS: 1.67 Total: 46.14 kcal
Total: -68.28 -1.03 -69.31 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000380062500.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.013 kcal
(2) G-P(sol) polarization free energy of solvation -68.278 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.265 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.031 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.309 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.295 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds