Wall clock time and date at job start Mon Mar 30 2020 03:43:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09010 * 109.46828 * 2 1
4 4 C 1.50697 * 109.47462 * 240.00362 * 2 1 3
5 5 H 1.08003 * 119.99722 * 240.00540 * 4 2 1
6 6 C 1.37877 * 120.00462 * 59.99279 * 4 2 1
7 7 N 1.31520 * 119.99561 * 0.02562 * 6 4 2
8 8 Si 1.86795 * 120.00256 * 180.02562 * 6 4 2
9 9 H 1.48503 * 109.46992 * 60.00426 * 8 6 4
10 10 H 1.48499 * 109.47229 * 180.02562 * 8 6 4
11 11 H 1.48499 * 109.47246 * 300.00559 * 8 6 4
12 12 N 1.46903 * 109.47352 * 119.99758 * 2 1 3
13 13 C 1.46904 * 110.99881 * 275.00524 * 12 2 1
14 14 C 1.50697 * 109.46726 * 179.97438 * 13 12 2
15 15 C 1.34327 * 126.16559 * 95.02335 * 14 13 12
16 16 O 1.34755 * 107.11469 * 179.97438 * 15 14 13
17 17 C 1.33967 * 107.75227 * 359.97438 * 16 15 14
18 18 C 1.50706 * 125.61514 * 179.97438 * 17 16 15
19 19 C 1.52995 * 117.50181 * 8.77508 * 18 17 16
20 20 C 1.52993 * 117.50081 * 300.11273 * 18 17 16
21 21 N 1.30249 * 108.76464 * 0.26658 * 17 16 15
22 22 H 1.08999 * 109.47008 * 60.00044 * 1 2 3
23 23 H 1.08996 * 109.46767 * 179.97438 * 1 2 3
24 24 H 1.08993 * 109.47169 * 299.99521 * 1 2 3
25 25 H 0.96999 * 119.99914 * 179.97438 * 7 6 4
26 26 H 1.00899 * 110.99850 * 151.04749 * 12 2 1
27 27 H 1.09002 * 109.47312 * 59.99924 * 13 12 2
28 28 H 1.09000 * 109.46850 * 299.99578 * 13 12 2
29 29 H 1.08003 * 126.44893 * 359.97438 * 15 14 13
30 30 H 1.08998 * 115.54512 * 154.44270 * 18 17 16
31 31 H 1.09000 * 117.49859 * 0.02562 * 19 18 17
32 32 H 1.08999 * 117.49900 * 145.01759 * 19 18 17
33 33 H 1.08998 * 117.50372 * 214.98309 * 20 18 17
34 34 H 1.09006 * 117.50059 * 359.97438 * 20 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 6 2.0324 -0.7103 -1.2305
5 1 2.6533 -1.5885 -1.1313
6 6 1.6993 -0.2393 -2.4828
7 7 0.9435 0.8302 -2.6034
8 14 2.3215 -1.1203 -4.0079
9 1 1.8260 -2.5202 -4.0077
10 1 1.8271 -0.4199 -5.2204
11 1 3.8065 -1.1208 -4.0081
12 7 2.0198 -0.6924 1.1995
13 6 2.0824 0.2227 2.3469
14 6 2.5874 -0.5217 3.5560
15 6 3.8608 -0.5733 3.9804
16 8 3.8787 -1.3399 5.0885
17 6 2.6237 -1.7440 5.3260
18 6 2.1862 -2.6227 6.4695
19 6 3.2157 -2.9292 7.5590
20 6 2.8053 -4.0185 6.5650
21 7 1.8450 -1.2575 4.4022
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0276 -0.0005
24 1 -0.3633 0.5137 0.8900
25 1 0.7094 1.1618 -3.4844
26 1 2.9174 -1.1204 1.0287
27 1 1.0870 0.6164 2.5526
28 1 2.7588 1.0463 2.1182
29 1 4.7106 -0.0911 3.5202
30 1 1.1463 -2.5113 6.7767
31 1 4.2094 -2.4950 7.4489
32 1 2.8531 -3.0198 8.5829
33 1 2.1730 -4.8254 6.9353
34 1 3.5289 -4.3015 5.8004
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000380150210.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:43:27
Heat of formation + Delta-G solvation = 47.689913 kcal
Electronic energy + Delta-G solvation = -16041.852272 eV
Core-core repulsion = 13363.321961 eV
Total energy + Delta-G solvation = -2678.530311 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-43.13816 -37.40005 -36.19940 -34.48788 -32.53350 -30.39329 -28.17156 -25.43544
-24.49362 -24.15497 -22.69542 -21.26707 -20.07813 -19.73255 -17.30219 -16.54664
-16.37468 -15.82741 -15.03045 -14.81524 -14.34525 -13.57515 -13.38848 -13.34767
-12.57164 -12.16668 -11.85692 -11.75969 -11.42360 -11.17894 -10.87404 -10.83954
-10.81448 -10.57547 -10.29924 -10.23799 -10.09457 -9.92613 -8.84414 -8.52292
-8.44222 -7.26608 -6.01974 -4.08593 1.57625 2.78516 2.84338 3.31665
3.36101 3.39174 3.58336 3.94671 4.40967 4.50557 4.64477 4.81791
5.14533 5.16983 5.29007 5.33449 5.48650 5.62644 5.73536 5.79820
5.83132 6.00562 6.17405 6.30750 6.53063 6.91637 7.18193 7.25252
7.51267 7.78228 7.90168 8.00461 8.28732 8.38597 8.65801 9.01163
9.57146 11.04344
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.044604 B = 0.004498 C = 0.004390
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 627.601708 B = 6223.153343 C = 6376.506232
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C 0.212 3.788
3 H 0.002 0.998
4 C -0.519 4.519
5 H 0.059 0.941
6 C 0.062 3.938
7 N -0.890 5.890
8 Si 0.898 3.102
9 H -0.276 1.276
10 H -0.287 1.287
11 H -0.278 1.278
12 N -0.680 5.680
13 C 0.136 3.864
14 C 0.013 3.987
15 C -0.085 4.085
16 O -0.207 6.207
17 C 0.206 3.794
18 C -0.065 4.065
19 C -0.166 4.166
20 C -0.159 4.159
21 N -0.456 5.456
22 H 0.081 0.919
23 H 0.032 0.968
24 H 0.005 0.995
25 H 0.262 0.738
26 H 0.330 0.670
27 H 0.082 0.918
28 H 0.038 0.962
29 H 0.214 0.786
30 H 0.144 0.856
31 H 0.102 0.898
32 H 0.107 0.893
33 H 0.109 0.891
34 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.326 -4.534 17.124 18.497
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.105 3.895
3 H 0.020 0.980
4 C -0.558 4.558
5 H 0.077 0.923
6 C -0.139 4.139
7 N -0.528 5.528
8 Si 0.726 3.274
9 H -0.202 1.202
10 H -0.213 1.213
11 H -0.204 1.204
12 N -0.312 5.312
13 C 0.006 3.994
14 C -0.107 4.107
15 C -0.156 4.156
16 O -0.094 6.094
17 C 0.000 4.000
18 C -0.084 4.084
19 C -0.204 4.204
20 C -0.197 4.197
21 N -0.186 5.186
22 H 0.099 0.901
23 H 0.051 0.949
24 H 0.024 0.976
25 H 0.072 0.928
26 H 0.147 0.853
27 H 0.100 0.900
28 H 0.056 0.944
29 H 0.230 0.770
30 H 0.161 0.839
31 H 0.120 0.880
32 H 0.126 0.874
33 H 0.127 0.873
34 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges 3.987 -4.754 17.112 18.202
hybrid contribution 1.802 0.319 -1.242 2.212
sum 5.789 -4.436 15.870 17.466
Atomic orbital electron populations
1.21709 0.97695 0.99500 0.99369 1.19138 0.92821 0.92290 0.85250
0.98008 1.21209 1.31603 1.12541 0.90414 0.92290 1.24913 0.95023
0.94997 0.99011 1.69893 1.36526 1.22834 1.23591 0.86568 0.79018
0.79818 0.82028 1.20180 1.21273 1.20352 1.60707 1.32099 1.32893
1.05468 1.20222 1.00528 0.92156 0.86479 1.21984 0.89963 1.00097
0.98658 1.24784 1.00742 1.00700 0.89347 1.84340 1.33040 1.52567
1.39499 1.25062 0.77712 0.99548 0.97714 1.20150 0.99672 0.95577
0.92961 1.23097 0.99536 1.02487 0.95234 1.23128 1.03253 0.91152
1.02200 1.70330 1.34086 1.11014 1.03130 0.90080 0.94901 0.97572
0.92845 0.85332 0.89992 0.94417 0.76983 0.83860 0.87974 0.87441
0.87265 0.88161
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.22 9.19 37.16 0.34 -2.87 16
2 C 0.21 5.50 2.60 -68.86 -0.18 5.32 16
3 H 0.00 0.06 7.80 -51.92 -0.40 -0.34 16
4 C -0.52 -14.45 8.59 -34.44 -0.30 -14.75 16
5 H 0.06 1.62 7.62 -52.48 -0.40 1.22 16
6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16
7 N -0.89 -25.61 11.32 55.43 0.63 -24.98 16
8 Si 0.90 21.42 29.54 -169.99 -5.02 16.39 16
9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
12 N -0.68 -15.32 6.29 -109.21 -0.69 -16.00 16
13 C 0.14 2.63 6.02 -4.98 -0.03 2.60 16
14 C 0.01 0.24 6.62 -82.81 -0.55 -0.31 16
15 C -0.09 -1.26 12.08 29.35 0.35 -0.90 16
16 O -0.21 -3.05 10.47 5.35 0.06 -2.99 16
17 C 0.21 3.11 7.83 -12.95 -0.10 3.01 16
18 C -0.06 -0.69 6.33 -91.77 -0.58 -1.28 16
19 C -0.17 -1.31 10.17 -26.70 -0.27 -1.59 16
20 C -0.16 -1.37 10.24 -26.70 -0.27 -1.65 16
21 N -0.46 -8.34 11.29 -7.36 -0.08 -8.42 16
22 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16
23 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16
24 H 0.01 0.13 7.45 -51.93 -0.39 -0.26 16
25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
26 H 0.33 7.20 8.22 -39.29 -0.32 6.87 16
27 H 0.08 1.66 7.44 -51.93 -0.39 1.28 16
28 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16
29 H 0.21 2.36 8.06 -52.48 -0.42 1.93 16
30 H 0.14 1.36 8.14 -51.93 -0.42 0.94 16
31 H 0.10 0.86 7.96 -51.93 -0.41 0.44 16
32 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16
33 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16
34 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16
LS Contribution 292.89 15.07 4.41 4.41
Total: -1.00 -31.37 292.89 -7.09 -38.47
By element:
Atomic # 1 Polarization: 8.60 SS G_CDS: -4.72 Total: 3.89 kcal
Atomic # 6 Polarization: -9.08 SS G_CDS: -1.68 Total: -10.76 kcal
Atomic # 7 Polarization: -49.26 SS G_CDS: -0.14 Total: -49.41 kcal
Atomic # 8 Polarization: -3.05 SS G_CDS: 0.06 Total: -2.99 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal
Total LS contribution 4.41 Total: 4.41 kcal
Total: -31.37 -7.09 -38.47 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000380150210.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.156 kcal
(2) G-P(sol) polarization free energy of solvation -31.375 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.781 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.466 kcal
(6) G-S(sol) free energy of system = (1) + (5) 47.690 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds