Wall clock time and date at job start Mon Mar 30 2020 03:40:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09002 * 109.46518 * 2 1
4 4 O 1.42899 * 109.47104 * 239.99634 * 2 1 3
5 5 C 1.52994 * 109.47084 * 119.99754 * 2 1 3
6 6 C 1.53000 * 109.47370 * 185.00392 * 5 2 1
7 7 N 1.46494 * 109.47364 * 180.02562 * 6 5 2
8 8 C 1.32209 * 120.00381 * 113.91597 * 7 6 5
9 9 C 1.46926 * 120.82928 * 354.09688 * 8 7 6
10 10 C 1.34371 * 119.36409 * 179.72759 * 9 8 7
11 11 N 1.36426 * 121.22751 * 359.97438 * 10 9 8
12 12 H 0.96998 * 119.09851 * 179.97438 * 11 10 9
13 13 C 1.37771 * 121.81643 * 0.02585 * 11 10 9
14 14 C 1.40185 * 119.74379 * 179.97438 * 13 11 10
15 15 H 1.07998 * 119.99853 * 146.97212 * 14 13 11
16 16 C 1.40350 * 120.00060 * 326.97178 * 14 13 11
17 17 N 1.30589 * 119.99989 * 358.48275 * 16 14 13
18 18 Si 1.86798 * 120.00073 * 178.47874 * 16 14 13
19 19 H 1.48500 * 109.47233 * 84.99992 * 18 16 14
20 20 H 1.48502 * 109.47065 * 204.99753 * 18 16 14
21 21 H 1.48497 * 109.47079 * 324.99997 * 18 16 14
22 22 C 1.39057 * 120.51401 * 359.95631 * 13 11 10
23 23 H 1.08998 * 109.46924 * 299.99915 * 1 2 3
24 24 H 1.08998 * 109.47089 * 60.00348 * 1 2 3
25 25 H 1.09010 * 109.46758 * 180.02562 * 1 2 3
26 26 H 0.96694 * 114.00250 * 299.99685 * 4 2 1
27 27 H 1.09000 * 109.47712 * 65.00057 * 5 2 1
28 28 H 1.09010 * 109.47190 * 305.00502 * 5 2 1
29 29 H 1.08997 * 109.47395 * 59.99507 * 6 5 2
30 30 H 1.08998 * 109.46780 * 299.99887 * 6 5 2
31 31 H 1.07996 * 120.31324 * 359.74877 * 9 8 7
32 32 H 1.08002 * 119.38620 * 180.02562 * 10 9 8
33 33 H 0.97000 * 120.00200 * 180.02562 * 17 16 14
34 34 H 1.08007 * 120.63200 * 180.02562 * 22 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0064 -0.6737 -1.1667
5 6 2.0400 -0.7212 1.2492
6 6 3.5649 -0.6132 1.3138
7 7 4.0532 -1.3042 2.5096
8 6 4.7956 -2.3914 2.3881
9 6 5.0352 -2.9962 1.0706
10 6 5.7990 -4.0980 0.9805
11 7 6.3563 -4.6649 2.0892
12 1 6.9022 -5.4604 1.9885
13 6 6.1643 -4.1394 3.3482
14 6 6.7573 -4.7577 4.4578
15 1 7.0843 -4.1620 5.2972
16 6 6.9261 -6.1509 4.4778
17 7 6.5040 -6.8742 3.4759
18 14 7.7548 -6.9704 5.9377
19 1 6.7494 -7.2198 7.0018
20 1 8.3513 -8.2607 5.5081
21 1 8.8223 -6.0822 6.4637
22 6 5.3872 -3.0002 3.5268
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0278 0.0005
26 1 1.7211 -1.5952 -1.2328
27 1 1.7517 -1.7714 1.2057
28 1 1.6053 -0.2616 2.1370
29 1 3.8532 0.4371 1.3574
30 1 3.9995 -1.0727 0.4261
31 1 4.6018 -2.5591 0.1833
32 1 5.9756 -4.5426 0.0122
33 1 6.6203 -7.8371 3.4899
34 1 5.2357 -2.5863 4.5128
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000380217106.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:40:02
Heat of formation + Delta-G solvation = -30.085720 kcal
Electronic energy + Delta-G solvation = -16101.635466 eV
Core-core repulsion = 13419.732550 eV
Total energy + Delta-G solvation = -2681.902916 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-38.55612 -37.68383 -34.86386 -33.58050 -31.82840 -30.57626 -29.56616 -27.33631
-25.89512 -22.89764 -21.53774 -21.06853 -19.84901 -17.95734 -16.56095 -16.09715
-15.71468 -15.37728 -14.88286 -14.51692 -13.80348 -13.53104 -13.03974 -12.84758
-12.73596 -12.50275 -11.86637 -11.81043 -11.54321 -11.44547 -11.12239 -10.95697
-10.71302 -10.54709 -10.37187 -10.15099 -9.77698 -9.68973 -9.27021 -8.13332
-7.48269 -7.18426 -5.91729 -4.79224 2.65669 2.76726 2.91594 2.96124
3.17888 3.70432 4.30292 4.54719 4.70340 5.00794 5.22968 5.33329
5.36745 5.62129 5.69021 5.80414 6.00803 6.03754 6.27438 6.32715
6.45438 6.52648 6.73282 6.78239 6.84409 6.94583 6.95586 7.43069
7.71563 7.78914 7.81084 7.99073 8.27072 8.37570 8.82051 8.95034
9.75055 9.83252
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.051841 B = 0.004718 C = 0.004567
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 539.980943 B = 5932.722020 C = 6129.104830
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C 0.099 3.901
3 H 0.094 0.906
4 O -0.566 6.566
5 C -0.142 4.142
6 C 0.064 3.936
7 N -0.673 5.673
8 C 0.281 3.719
9 C -0.303 4.303
10 C 0.124 3.876
11 N -0.597 5.597
12 H 0.416 0.584
13 C 0.335 3.665
14 C -0.475 4.475
15 H 0.100 0.900
16 C 0.077 3.923
17 N -0.831 5.831
18 Si 0.929 3.071
19 H -0.265 1.265
20 H -0.276 1.276
21 H -0.259 1.259
22 C -0.349 4.349
23 H 0.064 0.936
24 H 0.057 0.943
25 H 0.055 0.945
26 H 0.371 0.629
27 H 0.055 0.945
28 H 0.067 0.933
29 H 0.042 0.958
30 H 0.033 0.967
31 H 0.119 0.881
32 H 0.130 0.870
33 H 0.291 0.709
34 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.902 0.900 -4.998 5.849
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C 0.040 3.960
3 H 0.112 0.888
4 O -0.371 6.371
5 C -0.181 4.181
6 C -0.067 4.067
7 N -0.399 5.399
8 C 0.117 3.883
9 C -0.333 4.333
10 C -0.006 4.006
11 N -0.207 5.207
12 H 0.256 0.744
13 C 0.225 3.775
14 C -0.509 4.509
15 H 0.118 0.882
16 C -0.140 4.140
17 N -0.461 5.461
18 Si 0.753 3.247
19 H -0.189 1.189
20 H -0.201 1.201
21 H -0.182 1.182
22 C -0.378 4.378
23 H 0.083 0.917
24 H 0.076 0.924
25 H 0.075 0.925
26 H 0.218 0.782
27 H 0.074 0.926
28 H 0.086 0.914
29 H 0.061 0.939
30 H 0.051 0.949
31 H 0.137 0.863
32 H 0.148 0.852
33 H 0.102 0.898
34 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -3.087 1.936 -4.609 5.876
hybrid contribution 0.178 -1.691 -0.262 1.720
sum -2.909 0.245 -4.871 5.679
Atomic orbital electron populations
1.22501 0.97138 1.02239 1.02160 1.21986 0.92083 0.96783 0.85135
0.88828 1.86536 1.77506 1.28810 1.44249 1.22346 0.98670 1.00082
0.96966 1.21680 0.92608 0.98116 0.94308 1.73349 1.26340 1.14755
1.25436 1.20295 0.88340 0.89499 0.90144 1.22330 1.10133 1.01381
0.99416 1.21286 0.94451 0.94314 0.90522 1.42237 1.45309 1.28885
1.04240 0.74445 1.17699 0.88053 0.88937 0.82771 1.19458 1.36860
0.91834 1.02735 0.88179 1.26104 0.92361 0.97510 0.97984 1.69198
1.37077 1.08626 1.31155 0.85957 0.79954 0.78364 0.80445 1.18939
1.20116 1.18238 1.20355 1.15032 1.05476 0.96903 0.91719 0.92359
0.92547 0.78192 0.92639 0.91419 0.93928 0.94863 0.86317 0.85209
0.89818 0.86830
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.10 9.53 37.16 0.35 -1.75 16
2 C 0.10 1.41 3.59 -26.73 -0.10 1.32 16
3 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16
4 O -0.57 -8.31 12.88 -35.23 -0.45 -8.77 16
5 C -0.14 -2.47 5.22 -26.73 -0.14 -2.61 16
6 C 0.06 1.34 6.12 -4.05 -0.02 1.31 16
7 N -0.67 -16.78 10.62 -57.24 -0.61 -17.39 16
8 C 0.28 7.06 6.80 -82.74 -0.56 6.49 16
9 C -0.30 -6.61 9.34 -37.43 -0.35 -6.96 16
10 C 0.12 2.48 11.15 -16.87 -0.19 2.30 16
11 N -0.60 -13.18 4.82 -10.83 -0.05 -13.23 16
12 H 0.42 8.78 6.58 -40.82 -0.27 8.52 16
13 C 0.33 8.27 6.29 -84.16 -0.53 7.74 16
14 C -0.48 -11.40 9.03 -38.06 -0.34 -11.75 16
15 H 0.10 2.33 7.85 -52.49 -0.41 1.92 16
16 C 0.08 1.70 5.36 -17.29 -0.09 1.60 16
17 N -0.83 -18.51 11.02 55.57 0.61 -17.90 16
18 Si 0.93 16.85 29.56 -169.99 -5.03 11.82 16
19 H -0.26 -4.88 7.11 56.52 0.40 -4.47 16
20 H -0.28 -4.86 7.11 56.52 0.40 -4.46 16
21 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16
22 C -0.35 -9.05 9.83 -37.83 -0.37 -9.42 16
23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
25 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16
26 H 0.37 4.33 9.04 45.56 0.41 4.74 16
27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
28 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16
29 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16
30 H 0.03 0.70 5.00 -51.93 -0.26 0.44 16
31 H 0.12 2.40 5.99 -52.49 -0.31 2.08 16
32 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16
33 H 0.29 5.90 8.29 -40.82 -0.34 5.56 16
34 H 0.11 3.00 8.06 -52.48 -0.42 2.58 16
LS Contribution 288.35 15.07 4.35 4.35
Total: -1.00 -27.93 288.35 -7.31 -35.23
By element:
Atomic # 1 Polarization: 21.39 SS G_CDS: -3.78 Total: 17.61 kcal
Atomic # 6 Polarization: -9.38 SS G_CDS: -2.34 Total: -11.72 kcal
Atomic # 7 Polarization: -48.47 SS G_CDS: -0.05 Total: -48.52 kcal
Atomic # 8 Polarization: -8.31 SS G_CDS: -0.45 Total: -8.77 kcal
Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal
Total LS contribution 4.35 Total: 4.35 kcal
Total: -27.93 -7.31 -35.23 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000380217106.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.147 kcal
(2) G-P(sol) polarization free energy of solvation -27.926 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.779 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.232 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.086 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds