Wall clock time and date at job start Mon Mar 30 2020 03:40:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09002 * 109.46518 * 2 1
4 4 O 1.42899 * 109.47104 * 239.99634 * 2 1 3
5 5 C 1.52994 * 109.47084 * 119.99754 * 2 1 3
6 6 C 1.53000 * 109.47370 * 185.00392 * 5 2 1
7 7 N 1.46494 * 109.47364 * 180.02562 * 6 5 2
8 8 C 1.32209 * 120.00381 * 113.91597 * 7 6 5
9 9 C 1.46926 * 120.82928 * 354.09688 * 8 7 6
10 10 C 1.34371 * 119.36409 * 179.72759 * 9 8 7
11 11 N 1.36426 * 121.22751 * 359.97438 * 10 9 8
12 12 H 0.96998 * 119.09851 * 179.97438 * 11 10 9
13 13 C 1.37771 * 121.81643 * 0.02585 * 11 10 9
14 14 C 1.40185 * 119.74379 * 179.97438 * 13 11 10
15 15 H 1.07998 * 119.99853 * 146.97212 * 14 13 11
16 16 C 1.40350 * 120.00060 * 326.97178 * 14 13 11
17 17 N 1.30589 * 119.99989 * 358.48275 * 16 14 13
18 18 Si 1.86798 * 120.00073 * 178.47874 * 16 14 13
19 19 H 1.48500 * 109.47233 * 84.99992 * 18 16 14
20 20 H 1.48502 * 109.47065 * 204.99753 * 18 16 14
21 21 H 1.48497 * 109.47079 * 324.99997 * 18 16 14
22 22 C 1.39057 * 120.51401 * 359.95631 * 13 11 10
23 23 H 1.08998 * 109.46924 * 299.99915 * 1 2 3
24 24 H 1.08998 * 109.47089 * 60.00348 * 1 2 3
25 25 H 1.09010 * 109.46758 * 180.02562 * 1 2 3
26 26 H 0.96694 * 114.00250 * 299.99685 * 4 2 1
27 27 H 1.09000 * 109.47712 * 65.00057 * 5 2 1
28 28 H 1.09010 * 109.47190 * 305.00502 * 5 2 1
29 29 H 1.08997 * 109.47395 * 59.99507 * 6 5 2
30 30 H 1.08998 * 109.46780 * 299.99887 * 6 5 2
31 31 H 1.07996 * 120.31324 * 359.74877 * 9 8 7
32 32 H 1.08002 * 119.38620 * 180.02562 * 10 9 8
33 33 H 0.97000 * 120.00200 * 180.02562 * 17 16 14
34 34 H 1.08007 * 120.63200 * 180.02562 * 22 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0064 -0.6737 -1.1667
5 6 2.0400 -0.7212 1.2492
6 6 3.5649 -0.6132 1.3138
7 7 4.0532 -1.3042 2.5096
8 6 4.7956 -2.3914 2.3881
9 6 5.0352 -2.9962 1.0706
10 6 5.7990 -4.0980 0.9805
11 7 6.3563 -4.6649 2.0892
12 1 6.9022 -5.4604 1.9885
13 6 6.1643 -4.1394 3.3482
14 6 6.7573 -4.7577 4.4578
15 1 7.0843 -4.1620 5.2972
16 6 6.9261 -6.1509 4.4778
17 7 6.5040 -6.8742 3.4759
18 14 7.7548 -6.9704 5.9377
19 1 6.7494 -7.2198 7.0018
20 1 8.3513 -8.2607 5.5081
21 1 8.8223 -6.0822 6.4637
22 6 5.3872 -3.0002 3.5268
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 -0.3633 -1.0278 0.0005
26 1 1.7211 -1.5952 -1.2328
27 1 1.7517 -1.7714 1.2057
28 1 1.6053 -0.2616 2.1370
29 1 3.8532 0.4371 1.3574
30 1 3.9995 -1.0727 0.4261
31 1 4.6018 -2.5591 0.1833
32 1 5.9756 -4.5426 0.0122
33 1 6.6203 -7.8371 3.4899
34 1 5.2357 -2.5863 4.5128
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000380217106.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:40:01
Heat of formation + Delta-G solvation = -50.287132 kcal
Electronic energy + Delta-G solvation = -16102.511465 eV
Core-core repulsion = 13419.732550 eV
Total energy + Delta-G solvation = -2682.778915 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.31077 -38.90571 -36.57567 -35.29725 -33.21999 -32.32863 -31.00409 -28.93684
-27.61551 -24.40709 -23.23602 -22.37508 -21.57292 -19.73453 -18.34338 -17.28443
-17.15210 -16.89874 -16.54580 -16.06657 -15.39402 -14.85773 -14.63392 -14.45820
-14.17548 -13.92801 -13.36617 -13.04402 -12.94434 -12.91375 -12.81410 -12.56448
-12.41643 -11.93263 -11.74549 -11.70138 -11.35609 -11.26961 -10.80012 -9.91225
-9.28741 -8.90410 -7.72716 -6.67643 0.96929 1.07764 1.43448 1.55785
1.60231 2.18181 2.57034 2.96597 3.42180 3.51428 3.86303 4.07717
4.12393 4.16082 4.41857 4.56578 4.64215 4.75770 4.84543 4.94181
4.97890 5.00837 5.07808 5.18724 5.23515 5.33274 5.38939 5.65434
5.83057 5.99620 6.10992 6.44263 6.57758 6.81812 6.99280 7.20005
7.94217 8.12632
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.051841 B = 0.004718 C = 0.004567
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 539.980943 B = 5932.722020 C = 6129.104830
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.107 3.893
3 H 0.095 0.905
4 O -0.578 6.578
5 C -0.131 4.131
6 C 0.063 3.937
7 N -0.709 5.709
8 C 0.261 3.739
9 C -0.320 4.320
10 C 0.138 3.862
11 N -0.596 5.596
12 H 0.420 0.580
13 C 0.326 3.674
14 C -0.503 4.503
15 H 0.094 0.906
16 C 0.049 3.951
17 N -0.839 5.839
18 Si 0.999 3.001
19 H -0.268 1.268
20 H -0.259 1.259
21 H -0.258 1.258
22 C -0.392 4.392
23 H 0.070 0.930
24 H 0.072 0.928
25 H 0.061 0.939
26 H 0.384 0.616
27 H 0.045 0.955
28 H 0.061 0.939
29 H 0.039 0.961
30 H 0.033 0.967
31 H 0.135 0.865
32 H 0.185 0.815
33 H 0.304 0.696
34 H 0.088 0.912
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.801 -0.622 -6.097 6.739
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C 0.048 3.952
3 H 0.112 0.888
4 O -0.385 6.385
5 C -0.170 4.170
6 C -0.068 4.068
7 N -0.436 5.436
8 C 0.098 3.902
9 C -0.349 4.349
10 C 0.009 3.991
11 N -0.207 5.207
12 H 0.261 0.739
13 C 0.217 3.783
14 C -0.536 4.536
15 H 0.112 0.888
16 C -0.167 4.167
17 N -0.467 5.467
18 Si 0.819 3.181
19 H -0.193 1.193
20 H -0.183 1.183
21 H -0.182 1.182
22 C -0.421 4.421
23 H 0.089 0.911
24 H 0.091 0.909
25 H 0.080 0.920
26 H 0.233 0.767
27 H 0.064 0.936
28 H 0.080 0.920
29 H 0.057 0.943
30 H 0.051 0.949
31 H 0.153 0.847
32 H 0.202 0.798
33 H 0.115 0.885
34 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -3.001 0.412 -5.744 6.494
hybrid contribution 0.172 -1.280 0.083 1.294
sum -2.829 -0.868 -5.661 6.388
Atomic orbital electron populations
1.22415 0.94664 1.02985 1.03190 1.21904 0.93903 0.96143 0.83296
0.88755 1.86505 1.77978 1.29982 1.44036 1.22237 0.96094 0.99964
0.98677 1.21742 0.94895 0.97268 0.92900 1.73234 1.26832 1.15369
1.28153 1.20486 0.88370 0.89911 0.91436 1.22378 1.11691 1.02442
0.98384 1.21966 0.92201 0.93226 0.91752 1.42252 1.45446 1.29025
1.03935 0.73865 1.17809 0.87613 0.88633 0.84287 1.19682 1.37892
0.93230 1.02839 0.88753 1.26848 0.92187 0.97046 1.00651 1.69190
1.35822 1.09626 1.32102 0.84929 0.78684 0.77735 0.76774 1.19270
1.18329 1.18189 1.20317 1.17864 1.07488 0.96471 0.91058 0.90946
0.91981 0.76713 0.93569 0.92033 0.94289 0.94853 0.84698 0.79833
0.88484 0.89398
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.65 9.53 71.98 0.69 -2.96 16
2 C 0.11 2.89 3.59 30.59 0.11 3.00 16
3 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16
4 O -0.58 -16.00 12.88 -148.98 -1.92 -17.92 16
5 C -0.13 -4.55 5.22 30.59 0.16 -4.39 16
6 C 0.06 2.66 6.12 86.38 0.53 3.19 16
7 N -0.71 -36.70 10.62 -335.01 -3.56 -40.26 16
8 C 0.26 13.58 6.80 42.30 0.29 13.87 16
9 C -0.32 -13.83 9.34 23.66 0.22 -13.61 16
10 C 0.14 5.26 11.15 83.09 0.93 6.19 16
11 N -0.60 -25.88 4.82 -188.19 -0.91 -26.78 16
12 H 0.42 17.14 6.58 -92.71 -0.61 16.53 16
13 C 0.33 16.51 6.29 38.88 0.24 16.76 16
14 C -0.50 -24.54 9.03 23.26 0.21 -24.33 16
15 H 0.09 4.56 7.85 -2.91 -0.02 4.54 16
16 C 0.05 2.10 5.36 85.39 0.46 2.55 16
17 N -0.84 -35.90 11.02 21.89 0.24 -35.66 16
18 Si 1.00 33.20 29.56 68.60 2.03 35.23 16
19 H -0.27 -9.05 7.11 99.48 0.71 -8.34 16
20 H -0.26 -7.91 7.11 99.48 0.71 -7.21 16
21 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16
22 C -0.39 -21.42 9.83 23.41 0.23 -21.19 16
23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16
24 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16
25 H 0.06 1.22 8.14 -2.38 -0.02 1.21 16
26 H 0.38 8.27 9.04 -74.06 -0.67 7.60 16
27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16
28 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16
29 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16
30 H 0.03 1.40 5.00 -2.39 -0.01 1.38 16
31 H 0.14 5.30 5.99 -2.91 -0.02 5.28 16
32 H 0.18 4.95 8.06 -2.91 -0.02 4.93 16
33 H 0.30 11.54 8.29 -92.71 -0.77 10.78 16
34 H 0.09 5.04 8.06 -2.91 -0.02 5.02 16
Total: -1.00 -61.58 288.35 -0.21 -61.79
By element:
Atomic # 1 Polarization: 44.68 SS G_CDS: -0.16 Total: 44.52 kcal
Atomic # 6 Polarization: -24.98 SS G_CDS: 4.06 Total: -20.92 kcal
Atomic # 7 Polarization: -98.48 SS G_CDS: -4.22 Total: -102.70 kcal
Atomic # 8 Polarization: -16.00 SS G_CDS: -1.92 Total: -17.92 kcal
Atomic # 14 Polarization: 33.20 SS G_CDS: 2.03 Total: 35.23 kcal
Total: -61.58 -0.21 -61.79 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000380217106.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.502 kcal
(2) G-P(sol) polarization free energy of solvation -61.576 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.074 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.213 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.789 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.287 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds