Wall clock time and date at job start Mon Mar 30 2020 03:28:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.47176 * 2 1
4 4 H 1.09006 * 109.47186 * 55.00379 * 3 2 1
5 5 C 1.52999 * 109.47041 * 174.99916 * 3 2 1
6 6 O 1.42897 * 109.47150 * 55.00261 * 5 3 2
7 7 N 1.46496 * 109.47311 * 295.00041 * 3 2 1
8 8 C 1.32214 * 120.00081 * 127.02479 * 7 3 2
9 9 C 1.46918 * 120.83321 * 5.86752 * 8 7 3
10 10 C 1.34374 * 119.36463 * 179.70529 * 9 8 7
11 11 N 1.36422 * 121.22516 * 0.60520 * 10 9 8
12 12 H 0.96998 * 119.09273 * 179.67895 * 11 10 9
13 13 C 1.37772 * 121.82063 * 359.64527 * 11 10 9
14 14 C 1.40176 * 119.74653 * 180.02562 * 13 11 10
15 15 H 1.08000 * 119.99998 * 201.90273 * 14 13 11
16 16 C 1.40356 * 119.99767 * 21.91240 * 14 13 11
17 17 N 1.30584 * 120.00268 * 18.12370 * 16 14 13
18 18 Si 1.86801 * 119.99474 * 198.13015 * 16 14 13
19 19 H 1.48502 * 109.47386 * 89.99884 * 18 16 14
20 20 H 1.48505 * 109.46597 * 209.99569 * 18 16 14
21 21 H 1.48499 * 109.47354 * 329.99224 * 18 16 14
22 22 C 1.39068 * 120.50976 * 0.04938 * 13 11 10
23 23 H 1.09001 * 109.47186 * 59.99690 * 1 2 3
24 24 H 1.09000 * 109.47202 * 180.02562 * 1 2 3
25 25 H 1.08998 * 109.47080 * 299.99731 * 1 2 3
26 26 H 1.08998 * 109.47201 * 239.99727 * 2 1 3
27 27 H 1.09000 * 109.46677 * 120.00170 * 2 1 3
28 28 H 1.08998 * 109.47020 * 294.99832 * 5 3 2
29 29 H 1.09005 * 109.46982 * 174.99880 * 5 3 2
30 30 H 0.96695 * 114.00109 * 180.02562 * 6 5 3
31 31 H 1.07995 * 120.31212 * 359.97438 * 9 8 7
32 32 H 1.08003 * 119.38738 * 180.25421 * 10 9 8
33 33 H 0.96998 * 119.99554 * 180.02562 * 17 16 14
34 34 H 1.07999 * 120.62951 * 179.97438 * 22 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 0.8419
5 6 3.5648 1.4443 0.1257
6 8 4.1293 0.6404 -0.9121
7 7 1.6525 2.0975 -1.2518
8 6 1.0048 3.2497 -1.2220
9 6 0.7766 3.9527 0.0478
10 6 0.1199 5.1250 0.0431
11 7 -0.3493 5.6682 -1.1170
12 1 -0.8233 6.5138 -1.0839
13 6 -0.1680 5.0492 -2.3344
14 6 -0.6680 5.6466 -3.4997
15 1 -0.8536 5.0456 -4.3777
16 6 -0.9273 7.0257 -3.5256
17 7 -0.3912 7.8079 -2.6277
18 14 -2.0395 7.7423 -4.8443
19 1 -3.4442 7.7391 -4.3627
20 1 -1.6211 9.1360 -5.1409
21 1 -1.9371 6.9217 -6.0777
22 6 0.5069 3.8360 -2.4160
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.8934 -0.5139 -0.8899
27 1 1.8933 -0.5139 0.8900
28 1 3.8498 1.0377 1.0961
29 1 3.9355 2.4655 0.0366
30 1 5.0951 0.5956 -0.8937
31 1 1.1371 3.5334 0.9754
32 1 -0.0444 5.6442 0.9758
33 1 -0.5708 8.7609 -2.6455
34 1 0.6498 3.3489 -3.3692
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000380316839.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:26
Heat of formation + Delta-G solvation = -22.991796 kcal
Electronic energy + Delta-G solvation = -16476.267641 eV
Core-core repulsion = 13794.672341 eV
Total energy + Delta-G solvation = -2681.595300 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-38.57256 -37.00610 -34.83212 -33.81024 -32.07930 -30.57317 -28.83678 -27.22043
-25.76841 -22.85435 -21.66673 -21.01897 -19.04604 -18.04307 -16.86213 -16.59399
-15.43919 -15.02941 -14.51115 -14.08569 -13.76470 -13.69811 -13.06018 -12.78699
-12.70106 -12.11506 -11.75302 -11.68556 -11.54768 -11.10223 -10.93778 -10.70152
-10.51678 -10.47264 -10.17072 -10.05915 -9.68439 -9.38564 -9.22624 -8.22250
-7.39425 -7.26506 -5.92620 -4.72820 2.60723 2.77856 2.89273 2.94231
3.18856 3.66129 4.29930 4.63738 4.92984 5.35389 5.52213 5.59115
5.64830 5.80864 5.89396 6.02270 6.16334 6.23096 6.48074 6.50296
6.65505 6.71119 6.77239 6.83490 6.89353 6.98503 7.10314 7.43985
7.71909 7.79839 8.02833 8.18797 8.30198 8.33006 8.84299 8.96601
9.72092 9.83382
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.039140 B = 0.005617 C = 0.005590
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 715.213163 B = 4983.814346 C = 5007.408043
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.099 4.099
3 C 0.086 3.914
4 H 0.042 0.958
5 C 0.088 3.912
6 O -0.553 6.553
7 N -0.643 5.643
8 C 0.279 3.721
9 C -0.304 4.304
10 C 0.126 3.874
11 N -0.603 5.603
12 H 0.412 0.588
13 C 0.328 3.672
14 C -0.467 4.467
15 H 0.103 0.897
16 C 0.077 3.923
17 N -0.814 5.814
18 Si 0.923 3.077
19 H -0.265 1.265
20 H -0.275 1.275
21 H -0.256 1.256
22 C -0.357 4.357
23 H 0.063 0.937
24 H 0.039 0.961
25 H 0.039 0.961
26 H 0.068 0.932
27 H 0.040 0.960
28 H 0.026 0.974
29 H 0.033 0.967
30 H 0.359 0.641
31 H 0.114 0.886
32 H 0.129 0.871
33 H 0.291 0.709
34 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.147 -1.095 5.286 5.400
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.137 4.137
3 C -0.026 4.026
4 H 0.060 0.940
5 C 0.009 3.991
6 O -0.355 6.355
7 N -0.369 5.369
8 C 0.115 3.885
9 C -0.334 4.334
10 C -0.004 4.004
11 N -0.214 5.214
12 H 0.253 0.747
13 C 0.220 3.780
14 C -0.499 4.499
15 H 0.121 0.879
16 C -0.141 4.141
17 N -0.442 5.442
18 Si 0.747 3.253
19 H -0.190 1.190
20 H -0.200 1.200
21 H -0.180 1.180
22 C -0.386 4.386
23 H 0.082 0.918
24 H 0.058 0.942
25 H 0.059 0.941
26 H 0.087 0.913
27 H 0.059 0.941
28 H 0.044 0.956
29 H 0.051 0.949
30 H 0.203 0.797
31 H 0.132 0.868
32 H 0.146 0.854
33 H 0.103 0.897
34 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges -0.355 -1.690 4.683 4.992
hybrid contribution -0.028 1.404 0.742 1.588
sum -0.383 -0.286 5.425 5.446
Atomic orbital electron populations
1.21676 0.96682 0.99839 1.01867 1.21313 0.95048 0.96789 1.00523
1.21409 0.91096 0.95405 0.94732 0.94003 1.22386 0.95818 0.92869
0.87990 1.86667 1.23166 1.71942 1.53730 1.73527 1.28615 1.12995
1.21753 1.20300 0.87920 0.89837 0.90436 1.22290 1.12536 0.99074
0.99546 1.21218 0.95126 0.94633 0.89427 1.42049 1.50777 1.24474
1.04113 0.74728 1.17617 0.87533 0.89367 0.83491 1.19524 1.38863
0.92757 0.98803 0.87905 1.26198 0.93596 0.97106 0.97239 1.69354
1.33900 1.06945 1.33987 0.86028 0.79985 0.78358 0.80933 1.18955
1.20049 1.17982 1.20180 1.20007 1.01971 0.96439 0.91794 0.94186
0.94140 0.91344 0.94100 0.95595 0.94859 0.79681 0.86838 0.85356
0.89728 0.86983
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.59 9.80 37.16 0.36 -2.23 16
2 C -0.10 -1.87 5.33 -26.73 -0.14 -2.01 16
3 C 0.09 1.77 2.59 -67.93 -0.18 1.60 16
4 H 0.04 0.85 5.34 -51.93 -0.28 0.57 16
5 C 0.09 1.62 6.88 37.16 0.26 1.88 16
6 O -0.55 -10.25 12.83 -35.23 -0.45 -10.70 16
7 N -0.64 -15.85 9.62 -50.79 -0.49 -16.34 16
8 C 0.28 6.93 6.80 -82.74 -0.56 6.37 16
9 C -0.30 -6.56 9.34 -37.43 -0.35 -6.91 16
10 C 0.13 2.49 11.15 -16.87 -0.19 2.31 16
11 N -0.60 -13.27 4.89 -10.83 -0.05 -13.32 16
12 H 0.41 8.66 6.32 -40.82 -0.26 8.41 16
13 C 0.33 8.12 6.37 -84.16 -0.54 7.58 16
14 C -0.47 -11.18 9.02 -38.06 -0.34 -11.53 16
15 H 0.10 2.42 7.91 -52.49 -0.42 2.00 16
16 C 0.08 1.68 5.17 -17.29 -0.09 1.59 16
17 N -0.81 -17.90 11.13 55.57 0.62 -17.28 16
18 Si 0.92 16.52 29.60 -169.99 -5.03 11.49 16
19 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16
20 H -0.28 -4.86 7.11 56.52 0.40 -4.46 16
21 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16
22 C -0.36 -9.27 9.83 -37.82 -0.37 -9.64 16
23 H 0.06 1.33 7.75 -51.93 -0.40 0.92 16
24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16
25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16
26 H 0.07 1.42 7.73 -51.93 -0.40 1.01 16
27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16
28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16
29 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16
30 H 0.36 4.67 9.12 45.56 0.42 5.08 16
31 H 0.11 2.22 6.00 -52.49 -0.31 1.91 16
32 H 0.13 1.98 8.06 -52.48 -0.42 1.55 16
33 H 0.29 5.77 8.29 -40.82 -0.34 5.43 16
34 H 0.11 3.01 8.06 -52.49 -0.42 2.58 16
LS Contribution 286.94 15.07 4.32 4.32
Total: -1.00 -28.44 286.94 -6.97 -35.41
By element:
Atomic # 1 Polarization: 21.18 SS G_CDS: -3.75 Total: 17.43 kcal
Atomic # 6 Polarization: -8.87 SS G_CDS: -2.14 Total: -11.01 kcal
Atomic # 7 Polarization: -47.02 SS G_CDS: 0.08 Total: -46.94 kcal
Atomic # 8 Polarization: -10.25 SS G_CDS: -0.45 Total: -10.70 kcal
Atomic # 14 Polarization: 16.52 SS G_CDS: -5.03 Total: 11.49 kcal
Total LS contribution 4.32 Total: 4.32 kcal
Total: -28.44 -6.97 -35.41 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000380316839.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.414 kcal
(2) G-P(sol) polarization free energy of solvation -28.437 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.023 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.406 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.992 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds