Wall clock time and date at job start Mon Mar 30 2020 03:28:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52997 * 109.47176 * 2 1
4 4 H 1.09006 * 109.47186 * 55.00379 * 3 2 1
5 5 C 1.52999 * 109.47041 * 174.99916 * 3 2 1
6 6 O 1.42897 * 109.47150 * 55.00261 * 5 3 2
7 7 N 1.46496 * 109.47311 * 295.00041 * 3 2 1
8 8 C 1.32214 * 120.00081 * 127.02479 * 7 3 2
9 9 C 1.46918 * 120.83321 * 5.86752 * 8 7 3
10 10 C 1.34374 * 119.36463 * 179.70529 * 9 8 7
11 11 N 1.36422 * 121.22516 * 0.60520 * 10 9 8
12 12 H 0.96998 * 119.09273 * 179.67895 * 11 10 9
13 13 C 1.37772 * 121.82063 * 359.64527 * 11 10 9
14 14 C 1.40176 * 119.74653 * 180.02562 * 13 11 10
15 15 H 1.08000 * 119.99998 * 201.90273 * 14 13 11
16 16 C 1.40356 * 119.99767 * 21.91240 * 14 13 11
17 17 N 1.30584 * 120.00268 * 18.12370 * 16 14 13
18 18 Si 1.86801 * 119.99474 * 198.13015 * 16 14 13
19 19 H 1.48502 * 109.47386 * 89.99884 * 18 16 14
20 20 H 1.48505 * 109.46597 * 209.99569 * 18 16 14
21 21 H 1.48499 * 109.47354 * 329.99224 * 18 16 14
22 22 C 1.39068 * 120.50976 * 0.04938 * 13 11 10
23 23 H 1.09001 * 109.47186 * 59.99690 * 1 2 3
24 24 H 1.09000 * 109.47202 * 180.02562 * 1 2 3
25 25 H 1.08998 * 109.47080 * 299.99731 * 1 2 3
26 26 H 1.08998 * 109.47201 * 239.99727 * 2 1 3
27 27 H 1.09000 * 109.46677 * 120.00170 * 2 1 3
28 28 H 1.08998 * 109.47020 * 294.99832 * 5 3 2
29 29 H 1.09005 * 109.46982 * 174.99880 * 5 3 2
30 30 H 0.96695 * 114.00109 * 180.02562 * 6 5 3
31 31 H 1.07995 * 120.31212 * 359.97438 * 9 8 7
32 32 H 1.08003 * 119.38738 * 180.25421 * 10 9 8
33 33 H 0.96998 * 119.99554 * 180.02562 * 17 16 14
34 34 H 1.07999 * 120.62951 * 179.97438 * 22 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9815 0.8419
5 6 3.5648 1.4443 0.1257
6 8 4.1293 0.6404 -0.9121
7 7 1.6525 2.0975 -1.2518
8 6 1.0048 3.2497 -1.2220
9 6 0.7766 3.9527 0.0478
10 6 0.1199 5.1250 0.0431
11 7 -0.3493 5.6682 -1.1170
12 1 -0.8233 6.5138 -1.0839
13 6 -0.1680 5.0492 -2.3344
14 6 -0.6680 5.6466 -3.4997
15 1 -0.8536 5.0456 -4.3777
16 6 -0.9273 7.0257 -3.5256
17 7 -0.3912 7.8079 -2.6277
18 14 -2.0395 7.7423 -4.8443
19 1 -3.4442 7.7391 -4.3627
20 1 -1.6211 9.1360 -5.1409
21 1 -1.9371 6.9217 -6.0777
22 6 0.5069 3.8360 -2.4160
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0277 0.0005
25 1 -0.3633 0.5138 0.8900
26 1 1.8934 -0.5139 -0.8899
27 1 1.8933 -0.5139 0.8900
28 1 3.8498 1.0377 1.0961
29 1 3.9355 2.4655 0.0366
30 1 5.0951 0.5956 -0.8937
31 1 1.1371 3.5334 0.9754
32 1 -0.0444 5.6442 0.9758
33 1 -0.5708 8.7609 -2.6455
34 1 0.6498 3.3489 -3.3692
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000380316839.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:25
Heat of formation + Delta-G solvation = -43.780423 kcal
Electronic energy + Delta-G solvation = -16477.169103 eV
Core-core repulsion = 13794.672341 eV
Total energy + Delta-G solvation = -2682.496763 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-40.30126 -38.52809 -36.44644 -35.48408 -33.73592 -32.33159 -30.43556 -28.87930
-27.53665 -24.34638 -23.37733 -22.70722 -20.67877 -19.77377 -18.38242 -18.29863
-17.07725 -16.64208 -16.20151 -15.56589 -15.40203 -15.16517 -14.61069 -14.41607
-14.39791 -13.66922 -13.30120 -13.20290 -13.10681 -12.77683 -12.57374 -12.37970
-12.10819 -11.98783 -11.75226 -11.66153 -11.31625 -10.91230 -10.80637 -9.97987
-9.13824 -8.96706 -7.69289 -6.60657 0.96916 1.12931 1.41839 1.55044
1.62778 2.16534 2.57390 2.94436 3.48420 3.64135 4.04747 4.09625
4.20115 4.33942 4.42702 4.52514 4.61170 4.75434 4.89971 4.97806
5.03304 5.06801 5.07854 5.21536 5.26908 5.45968 5.54489 5.69238
5.88453 6.02304 6.13199 6.52135 6.52848 7.02525 7.04561 7.23075
8.04074 8.08187
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.039140 B = 0.005617 C = 0.005590
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 715.213163 B = 4983.814346 C = 5007.408043
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.094 4.094
3 C 0.074 3.926
4 H 0.049 0.951
5 C 0.091 3.909
6 O -0.576 6.576
7 N -0.677 5.677
8 C 0.261 3.739
9 C -0.320 4.320
10 C 0.136 3.864
11 N -0.604 5.604
12 H 0.417 0.583
13 C 0.320 3.680
14 C -0.497 4.497
15 H 0.092 0.908
16 C 0.051 3.949
17 N -0.822 5.822
18 Si 0.995 3.005
19 H -0.253 1.253
20 H -0.263 1.263
21 H -0.265 1.265
22 C -0.405 4.405
23 H 0.025 0.975
24 H 0.064 0.936
25 H 0.051 0.949
26 H 0.044 0.956
27 H 0.072 0.928
28 H 0.065 0.935
29 H 0.019 0.981
30 H 0.383 0.617
31 H 0.135 0.865
32 H 0.183 0.817
33 H 0.306 0.694
34 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.685 0.095 6.935 6.969
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.132 4.132
3 C -0.038 4.038
4 H 0.067 0.933
5 C 0.013 3.987
6 O -0.382 6.382
7 N -0.402 5.402
8 C 0.096 3.904
9 C -0.349 4.349
10 C 0.007 3.993
11 N -0.215 5.215
12 H 0.258 0.742
13 C 0.211 3.789
14 C -0.529 4.529
15 H 0.110 0.890
16 C -0.167 4.167
17 N -0.449 5.449
18 Si 0.815 3.185
19 H -0.178 1.178
20 H -0.188 1.188
21 H -0.189 1.189
22 C -0.434 4.434
23 H 0.045 0.955
24 H 0.083 0.917
25 H 0.070 0.930
26 H 0.063 0.937
27 H 0.091 0.909
28 H 0.083 0.917
29 H 0.038 0.962
30 H 0.230 0.770
31 H 0.153 0.847
32 H 0.200 0.800
33 H 0.118 0.882
34 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -0.856 -0.508 6.365 6.442
hybrid contribution 0.193 1.059 0.216 1.098
sum -0.663 0.551 6.581 6.637
Atomic orbital electron populations
1.21606 0.96308 1.01022 1.00496 1.21277 0.95376 0.95734 1.00781
1.21624 0.92929 0.95900 0.93299 0.93348 1.22316 0.94228 0.92530
0.89654 1.86605 1.25542 1.71821 1.54271 1.73406 1.28489 1.13376
1.24957 1.20425 0.88123 0.90384 0.91429 1.22372 1.13884 0.99855
0.98814 1.21919 0.92922 0.94087 0.90359 1.42046 1.51016 1.24563
1.03919 0.74174 1.17697 0.87075 0.89147 0.85023 1.19706 1.40288
0.94223 0.98670 0.88980 1.26916 0.94063 0.96333 0.99414 1.69328
1.33166 1.07971 1.34470 0.84976 0.78278 0.77619 0.77638 1.17750
1.18766 1.18885 1.20094 1.23463 1.03777 0.96041 0.95540 0.91722
0.93023 0.93745 0.90937 0.91706 0.96244 0.76984 0.84725 0.79969
0.88205 0.90258
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.88 9.80 71.98 0.71 -4.18 16
2 C -0.09 -3.46 5.33 30.59 0.16 -3.30 16
3 C 0.07 3.03 2.59 44.99 0.12 3.15 16
4 H 0.05 1.90 5.34 -2.38 -0.01 1.89 16
5 C 0.09 3.24 6.88 71.98 0.50 3.73 16
6 O -0.58 -21.01 12.83 -148.98 -1.91 -22.92 16
7 N -0.68 -34.53 9.62 -314.60 -3.03 -37.55 16
8 C 0.26 13.45 6.80 42.30 0.29 13.74 16
9 C -0.32 -13.59 9.34 23.66 0.22 -13.37 16
10 C 0.14 5.16 11.15 83.10 0.93 6.09 16
11 N -0.60 -26.29 4.89 -188.19 -0.92 -27.22 16
12 H 0.42 17.00 6.32 -92.71 -0.59 16.42 16
13 C 0.32 16.36 6.37 38.88 0.25 16.60 16
14 C -0.50 -24.54 9.02 23.26 0.21 -24.33 16
15 H 0.09 4.59 7.91 -2.91 -0.02 4.57 16
16 C 0.05 2.18 5.17 85.39 0.44 2.62 16
17 N -0.82 -34.94 11.13 21.89 0.24 -34.70 16
18 Si 1.00 32.77 29.60 68.60 2.03 34.80 16
19 H -0.25 -7.91 7.11 99.48 0.71 -7.20 16
20 H -0.26 -8.16 7.11 99.48 0.71 -7.46 16
21 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16
22 C -0.40 -22.41 9.83 23.41 0.23 -22.18 16
23 H 0.03 1.11 7.75 -2.39 -0.02 1.09 16
24 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16
25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16
26 H 0.04 1.84 7.73 -2.39 -0.02 1.82 16
27 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16
28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
29 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16
30 H 0.38 9.49 9.12 -74.06 -0.68 8.82 16
31 H 0.14 5.04 6.00 -2.91 -0.02 5.02 16
32 H 0.18 4.85 8.06 -2.91 -0.02 4.83 16
33 H 0.31 11.38 8.29 -92.71 -0.77 10.61 16
34 H 0.08 4.70 8.06 -2.91 -0.02 4.68 16
Total: -1.00 -64.31 286.94 0.32 -64.00
By element:
Atomic # 1 Polarization: 45.15 SS G_CDS: -0.14 Total: 45.01 kcal
Atomic # 6 Polarization: -25.47 SS G_CDS: 4.04 Total: -21.42 kcal
Atomic # 7 Polarization: -95.76 SS G_CDS: -3.70 Total: -99.46 kcal
Atomic # 8 Polarization: -21.01 SS G_CDS: -1.91 Total: -22.92 kcal
Atomic # 14 Polarization: 32.77 SS G_CDS: 2.03 Total: 34.80 kcal
Total: -64.31 0.32 -64.00 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000380316839.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.216 kcal
(2) G-P(sol) polarization free energy of solvation -64.314 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.098 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.997 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.780 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds