Wall clock time and date at job start Mon Mar 30 2020 03:45:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17392 * 1
3 3 C 1.47206 * 179.97438 * 2 1
4 4 N 1.46488 * 109.47304 * 75.49533 * 3 2 1
5 5 C 1.37097 * 120.00311 * 272.12918 * 4 3 2
6 6 H 1.08000 * 119.99974 * 186.11463 * 5 4 3
7 7 C 1.38952 * 119.99822 * 6.11426 * 5 4 3
8 8 N 1.31407 * 120.00088 * 24.21991 * 7 5 4
9 9 Si 1.86801 * 119.99999 * 204.22490 * 7 5 4
10 10 H 1.48501 * 109.47398 * 89.99740 * 9 7 5
11 11 H 1.48503 * 109.46983 * 210.00170 * 9 7 5
12 12 H 1.48506 * 109.46945 * 329.99548 * 9 7 5
13 13 C 1.34776 * 120.00093 * 92.12868 * 4 3 2
14 14 O 1.21297 * 120.00000 * 5.47603 * 13 4 3
15 15 C 1.50704 * 120.00106 * 185.47768 * 13 4 3
16 16 H 1.08999 * 109.46995 * 318.72737 * 15 13 4
17 17 C 1.53000 * 109.47291 * 78.73460 * 15 13 4
18 18 N 1.46905 * 109.46588 * 198.72989 * 15 13 4
19 19 C 1.46909 * 110.99629 * 154.99938 * 18 15 13
20 20 C 1.52998 * 117.49998 * 223.74605 * 19 18 15
21 21 C 1.52995 * 117.49660 * 155.08435 * 19 18 15
22 22 H 4.40641 * 5.51354 * 179.97438 * 4 1 2
23 23 H 1.09004 * 109.46881 * 315.49204 * 3 2 1
24 24 H 1.09001 * 109.46730 * 195.49676 * 3 2 1
25 25 H 0.97002 * 119.99957 * 179.97438 * 8 7 5
26 26 H 1.09000 * 109.47159 * 175.26712 * 17 15 13
27 27 H 1.08997 * 109.46527 * 295.26286 * 17 15 13
28 28 H 1.08993 * 109.47447 * 55.25884 * 17 15 13
29 29 H 1.00898 * 111.00110 * 278.94707 * 18 15 13
30 30 H 1.09005 * 115.54632 * 9.41631 * 19 18 15
31 31 H 1.09002 * 117.49496 * 0.02562 * 20 19 18
32 32 H 1.08996 * 117.50027 * 145.01728 * 20 19 18
33 33 H 1.09003 * 117.49867 * 214.97615 * 21 19 18
34 34 H 1.08995 * 117.50256 * 0.02562 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1739 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1345 -0.3450 -1.3371
5 6 3.3220 -1.6591 -1.6799
6 1 3.7744 -1.9107 -2.6278
7 6 2.9300 -2.6674 -0.8078
8 7 1.9896 -2.4385 0.0811
9 14 3.7400 -4.3482 -0.8988
10 1 4.9249 -4.3759 -0.0039
11 1 2.7711 -5.3885 -0.4695
12 1 4.1680 -4.6165 -2.2953
13 6 3.3996 0.6288 -2.2303
14 8 3.3294 1.7930 -1.8970
15 6 3.7831 0.2713 -3.6432
16 1 4.4670 -0.5774 -3.6303
17 6 2.5269 -0.0977 -4.4349
18 7 4.4415 1.4212 -4.2776
19 6 5.3302 0.9858 -5.3633
20 6 6.7107 1.6395 -5.4515
21 6 5.6300 1.9912 -6.4769
22 1 -1.0500 -0.0002 0.0000
23 1 3.0096 -0.7321 0.7204
24 1 3.0088 0.9912 0.2746
25 1 1.7158 -3.1425 0.6896
26 1 2.7931 -0.2746 -5.4770
27 1 2.0849 -1.0010 -4.0144
28 1 1.8079 0.7194 -4.3771
29 1 3.7619 2.0878 -4.6119
30 1 5.2523 -0.0652 -5.6417
31 1 6.9596 2.3923 -4.7035
32 1 7.5409 1.0188 -5.7881
33 1 5.7498 1.6017 -7.4879
34 1 5.1682 2.9758 -6.4037
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000383045096.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:45:40
Heat of formation + Delta-G solvation = 66.287139 kcal
Electronic energy + Delta-G solvation = -16866.257550 eV
Core-core repulsion = 14188.533675 eV
Total energy + Delta-G solvation = -2677.723875 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-38.96967 -37.36451 -35.11799 -33.71129 -31.81753 -31.29961 -28.42775 -26.50300
-24.83260 -22.74456 -22.18316 -20.83071 -19.08126 -17.83230 -16.56328 -16.40802
-15.58189 -14.88053 -14.39486 -14.12985 -13.92894 -13.34230 -13.14820 -12.89292
-12.41420 -11.90495 -11.79351 -11.58679 -11.38481 -11.33683 -11.06425 -10.89350
-10.57366 -10.45005 -10.32753 -10.15036 -9.33437 -9.28039 -8.65993 -8.41079
-7.96063 -7.74812 -6.39353 -3.88932 3.08667 3.19678 3.20771 3.74106
3.89359 4.01599 4.13429 4.30705 4.39380 4.96567 5.08089 5.09736
5.17263 5.47461 5.67045 5.70376 5.74386 5.78922 5.88487 5.96450
6.09494 6.30730 6.35874 6.37358 6.65414 6.75769 6.99464 7.20866
7.34314 7.49209 7.62997 7.79409 8.31994 9.01701 9.04653 9.48409
9.88946 10.58616
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.023337 B = 0.008298 C = 0.006750
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1199.543460 B = 3373.633645 C = 4147.452024
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.282 4.282
2 C -0.091 4.091
3 C 0.237 3.763
4 N -0.442 5.442
5 C -0.342 4.342
6 H 0.102 0.898
7 C 0.038 3.962
8 N -0.850 5.850
9 Si 0.915 3.085
10 H -0.276 1.276
11 H -0.285 1.285
12 H -0.271 1.271
13 C 0.472 3.528
14 O -0.592 6.592
15 C 0.086 3.914
16 H 0.096 0.904
17 C -0.169 4.169
18 N -0.638 5.638
19 C 0.024 3.976
20 C -0.172 4.172
21 C -0.198 4.198
22 H 0.196 0.804
23 H 0.108 0.892
24 H 0.069 0.931
25 H 0.270 0.730
26 H 0.050 0.950
27 H 0.078 0.922
28 H 0.053 0.947
29 H 0.345 0.655
30 H 0.098 0.902
31 H 0.098 0.902
32 H 0.089 0.911
33 H 0.090 0.910
34 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.445 1.257 -7.455 8.308
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.301 4.301
2 C -0.093 4.093
3 C 0.115 3.885
4 N -0.161 5.161
5 C -0.469 4.469
6 H 0.120 0.880
7 C -0.168 4.168
8 N -0.487 5.487
9 Si 0.741 3.259
10 H -0.202 1.202
11 H -0.211 1.211
12 H -0.195 1.195
13 C 0.260 3.740
14 O -0.477 6.477
15 C -0.027 4.027
16 H 0.114 0.886
17 C -0.228 4.228
18 N -0.269 5.269
19 C -0.087 4.087
20 C -0.211 4.211
21 C -0.236 4.236
22 H 0.213 0.787
23 H 0.126 0.874
24 H 0.087 0.913
25 H 0.080 0.920
26 H 0.069 0.931
27 H 0.097 0.903
28 H 0.073 0.927
29 H 0.165 0.835
30 H 0.116 0.884
31 H 0.116 0.884
32 H 0.108 0.892
33 H 0.108 0.892
34 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges 3.814 1.738 -6.631 7.844
hybrid contribution -0.650 -1.440 -0.694 1.726
sum 3.165 0.298 -7.325 7.985
Atomic orbital electron populations
1.24152 0.95287 1.07950 1.02719 1.23176 0.94319 0.93982 0.97788
1.18189 0.84073 0.99681 0.86574 1.43718 1.56216 1.05915 1.10204
1.19611 1.40633 0.80677 1.06015 0.88008 1.25195 0.95088 0.99764
0.96753 1.70164 1.23413 1.34297 1.20787 0.86130 0.79239 0.81663
0.78849 1.20220 1.21098 1.19537 1.19845 0.82607 0.85213 0.86369
1.90523 1.58378 1.19188 1.79628 1.21329 0.95472 0.92764 0.93097
0.88564 1.22297 0.98254 1.03360 0.98921 1.59886 1.24247 1.14143
1.28582 1.22394 0.96925 0.96177 0.93249 1.23124 0.92397 1.04034
1.01536 1.23231 1.05093 1.00634 0.94681 0.78668 0.87397 0.91267
0.91955 0.93079 0.90277 0.92748 0.83457 0.88435 0.88355 0.89222
0.89160 0.88751
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.28 -6.46 19.25 29.55 0.57 -5.89 16
2 C -0.09 -2.27 11.45 -37.12 -0.42 -2.69 16
3 C 0.24 5.88 5.26 -6.83 -0.04 5.85 16
4 N -0.44 -11.05 2.59 -117.94 -0.31 -11.35 16
5 C -0.34 -8.40 8.54 -14.93 -0.13 -8.53 16
6 H 0.10 2.35 5.87 -52.49 -0.31 2.05 16
7 C 0.04 0.92 4.96 -17.47 -0.09 0.84 16
8 N -0.85 -21.63 8.97 55.50 0.50 -21.13 16
9 Si 0.91 19.00 29.62 -169.99 -5.03 13.96 16
10 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16
11 H -0.29 -6.01 7.11 56.52 0.40 -5.60 16
12 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16
13 C 0.47 11.44 6.88 -10.98 -0.08 11.37 16
14 O -0.59 -15.88 16.06 5.54 0.09 -15.79 16
15 C 0.09 1.70 2.07 -68.86 -0.14 1.55 16
16 H 0.10 1.89 6.11 -51.93 -0.32 1.58 16
17 C -0.17 -3.00 9.06 37.16 0.34 -2.66 16
18 N -0.64 -11.38 6.05 -100.94 -0.61 -11.99 16
19 C 0.02 0.34 5.91 -67.71 -0.40 -0.06 16
20 C -0.17 -2.25 10.46 -26.69 -0.28 -2.53 16
21 C -0.20 -2.36 10.34 -26.69 -0.28 -2.63 16
22 H 0.20 3.67 7.80 -54.09 -0.42 3.24 16
23 H 0.11 2.70 6.26 -51.93 -0.32 2.38 16
24 H 0.07 1.68 7.29 -51.93 -0.38 1.30 16
25 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16
26 H 0.05 0.76 7.99 -51.93 -0.42 0.34 16
27 H 0.08 1.53 7.41 -51.93 -0.38 1.14 16
28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
29 H 0.35 5.98 8.43 -39.29 -0.33 5.64 16
30 H 0.10 1.35 7.77 -51.93 -0.40 0.94 16
31 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16
32 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16
33 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16
34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16
LS Contribution 292.74 15.07 4.41 4.41
Total: -1.00 -28.75 292.74 -6.43 -35.17
By element:
Atomic # 1 Polarization: 16.64 SS G_CDS: -4.53 Total: 12.11 kcal
Atomic # 6 Polarization: -4.45 SS G_CDS: -0.94 Total: -5.40 kcal
Atomic # 7 Polarization: -44.06 SS G_CDS: -0.42 Total: -44.48 kcal
Atomic # 8 Polarization: -15.88 SS G_CDS: 0.09 Total: -15.79 kcal
Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.96 kcal
Total LS contribution 4.41 Total: 4.41 kcal
Total: -28.75 -6.43 -35.17 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000383045096.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 101.462 kcal
(2) G-P(sol) polarization free energy of solvation -28.746 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.716 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.175 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.287 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds