Wall clock time and date at job start Mon Mar 30 2020 03:45:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17400 * 1
3 3 C 1.47197 * 179.97438 * 2 1
4 4 N 1.46507 * 109.47235 * 202.43563 * 3 2 1
5 5 C 1.37098 * 119.99465 * 276.50127 * 4 3 2
6 6 H 1.08004 * 120.00020 * 141.35014 * 5 4 3
7 7 C 1.38954 * 120.00121 * 321.33889 * 5 4 3
8 8 N 1.31417 * 119.99696 * 162.24412 * 7 5 4
9 9 Si 1.86800 * 119.99909 * 342.24576 * 7 5 4
10 10 H 1.48499 * 109.47161 * 94.34010 * 9 7 5
11 11 H 1.48505 * 109.46797 * 214.34031 * 9 7 5
12 12 H 1.48493 * 109.47246 * 334.33877 * 9 7 5
13 13 C 1.34771 * 120.00237 * 96.21962 * 4 3 2
14 14 O 1.21293 * 119.99840 * 186.04122 * 13 4 3
15 15 C 1.50696 * 120.00036 * 6.03952 * 13 4 3
16 16 H 1.09001 * 109.47129 * 37.17698 * 15 13 4
17 17 C 1.52996 * 109.47339 * 277.17477 * 15 13 4
18 18 N 1.46904 * 109.47265 * 157.17336 * 15 13 4
19 19 C 1.46899 * 111.00091 * 205.00042 * 18 15 13
20 20 C 1.53003 * 117.49649 * 223.74924 * 19 18 15
21 21 C 1.52998 * 117.49708 * 155.08878 * 19 18 15
22 22 H 4.40641 * 5.51359 * 180.02562 * 4 1 2
23 23 H 1.09001 * 109.47777 * 82.43182 * 3 2 1
24 24 H 1.09007 * 109.47604 * 322.43238 * 3 2 1
25 25 H 0.96999 * 119.99262 * 179.97438 * 8 7 5
26 26 H 1.09004 * 109.47128 * 61.88859 * 17 15 13
27 27 H 1.09004 * 109.47462 * 181.88866 * 17 15 13
28 28 H 1.09000 * 109.47657 * 301.89169 * 17 15 13
29 29 H 1.00895 * 111.00048 * 328.95445 * 18 15 13
30 30 H 1.08999 * 115.55045 * 9.41944 * 19 18 15
31 31 H 1.08994 * 117.50187 * 359.97438 * 20 19 18
32 32 H 1.09005 * 117.49734 * 145.02414 * 20 19 18
33 33 H 1.08995 * 117.49716 * 214.97605 * 21 19 18
34 34 H 1.08995 * 117.49952 * 359.97438 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1338 1.2776 0.5272
5 6 3.2350 2.3666 -0.2996
6 1 2.9773 3.3491 0.0675
7 6 3.6694 2.2063 -1.6097
8 7 3.4436 3.1492 -2.4968
9 14 4.5743 0.6506 -2.1099
10 1 3.6067 -0.3262 -2.6711
11 1 5.5961 0.9805 -3.1359
12 1 5.2396 0.0608 -0.9206
13 6 3.4776 1.3833 1.8260
14 8 3.7764 2.4641 2.2882
15 6 3.4907 0.1586 2.7040
16 1 3.8512 -0.6956 2.1308
17 6 2.0732 -0.1250 3.2050
18 7 4.3789 0.3881 3.8514
19 6 4.8891 -0.8821 4.3845
20 6 4.9027 -1.0555 5.9047
21 6 6.2157 -0.8465 5.1459
22 1 -1.0501 -0.0005 0.0000
23 1 3.0095 -0.1345 -1.0187
24 1 3.0098 -0.8138 0.6266
25 1 3.7471 3.0374 -3.4112
26 1 1.4214 -0.3284 2.3553
27 1 2.0882 -0.9910 3.8669
28 1 1.7000 0.7422 3.7497
29 1 5.1365 1.0068 3.6041
30 1 4.6797 -1.7640 3.7792
31 1 4.5335 -0.2271 6.5091
32 1 4.7027 -2.0517 6.2993
33 1 6.8789 -1.7053 5.0418
34 1 6.7101 0.1192 5.2508
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000383045097.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:45:41
Heat of formation + Delta-G solvation = 72.099679 kcal
Electronic energy + Delta-G solvation = -16906.836532 eV
Core-core repulsion = 14229.364708 eV
Total energy + Delta-G solvation = -2677.471824 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-39.40017 -37.48211 -35.45843 -33.84335 -32.55563 -31.63073 -28.90052 -26.83332
-25.47452 -22.82385 -22.31916 -20.85534 -18.98512 -18.47147 -16.75892 -16.58000
-16.08841 -15.63345 -15.27119 -14.26852 -14.06411 -13.65749 -13.15898 -13.00706
-12.81978 -12.46330 -12.14944 -11.78202 -11.58733 -11.52530 -11.44273 -11.02286
-10.73197 -10.55352 -10.32969 -10.22653 -9.78521 -9.53994 -9.14294 -8.53763
-8.12645 -7.93532 -6.42776 -4.05546 2.93932 3.11549 3.12079 3.14599
3.34233 3.59700 3.88132 4.02429 4.08024 4.54682 4.79515 4.95892
5.01190 5.04251 5.22118 5.31621 5.37121 5.60736 5.66179 5.67854
5.73155 5.92097 5.95502 6.09725 6.10479 6.21372 6.38811 6.55280
7.17632 7.49676 7.56707 8.09564 8.21670 8.41487 8.86666 9.22734
9.62803 10.69293
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.025842 B = 0.008173 C = 0.007366
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1083.245030 B = 3424.899149 C = 3800.229427
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.173 4.173
3 C 0.191 3.809
4 N -0.463 5.463
5 C -0.316 4.316
6 H 0.108 0.892
7 C 0.061 3.939
8 N -0.863 5.863
9 Si 0.873 3.127
10 H -0.272 1.272
11 H -0.284 1.284
12 H -0.264 1.264
13 C 0.472 3.528
14 O -0.543 6.543
15 C 0.069 3.931
16 H 0.057 0.943
17 C -0.135 4.135
18 N -0.638 5.638
19 C 0.019 3.981
20 C -0.170 4.170
21 C -0.197 4.197
22 H 0.214 0.786
23 H 0.085 0.915
24 H 0.090 0.910
25 H 0.275 0.725
26 H 0.064 0.936
27 H 0.057 0.943
28 H 0.065 0.935
29 H 0.355 0.645
30 H 0.098 0.902
31 H 0.098 0.902
32 H 0.090 0.910
33 H 0.092 0.908
34 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.477 -12.330 8.368 14.910
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C -0.175 4.175
3 C 0.068 3.932
4 N -0.185 5.185
5 C -0.443 4.443
6 H 0.125 0.875
7 C -0.145 4.145
8 N -0.499 5.499
9 Si 0.701 3.299
10 H -0.199 1.199
11 H -0.210 1.210
12 H -0.188 1.188
13 C 0.260 3.740
14 O -0.422 6.422
15 C -0.044 4.044
16 H 0.075 0.925
17 C -0.193 4.193
18 N -0.271 5.271
19 C -0.092 4.092
20 C -0.208 4.208
21 C -0.235 4.235
22 H 0.231 0.769
23 H 0.102 0.898
24 H 0.108 0.892
25 H 0.085 0.915
26 H 0.082 0.918
27 H 0.076 0.924
28 H 0.084 0.916
29 H 0.177 0.823
30 H 0.116 0.884
31 H 0.117 0.883
32 H 0.108 0.892
33 H 0.110 0.890
34 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 0.181 -11.586 8.824 14.565
hybrid contribution 0.832 -1.059 -1.247 1.835
sum 1.013 -12.645 7.578 14.776
Atomic orbital electron populations
1.24714 0.95640 1.00840 1.01858 1.23524 0.94707 0.99807 0.99429
1.18914 0.84482 0.89110 1.00699 1.43666 1.56929 1.09595 1.08338
1.19049 1.44608 0.88318 0.92346 0.87490 1.25337 0.96014 0.97446
0.95661 1.69710 1.42669 1.34294 1.03216 0.87012 0.80430 0.83341
0.79106 1.19928 1.21024 1.18817 1.20251 0.80836 0.90024 0.82911
1.90584 1.50438 1.28487 1.72692 1.21585 0.95733 0.96449 0.90632
0.92511 1.21763 0.94094 1.02133 1.01337 1.60052 1.22827 1.11166
1.33092 1.22469 0.99058 0.93306 0.94399 1.23120 1.00249 1.02464
0.95014 1.23262 0.91071 1.03222 1.05932 0.76924 0.89766 0.89187
0.91482 0.91760 0.92369 0.91596 0.82295 0.88440 0.88316 0.89172
0.88968 0.88492
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.21 -3.62 19.21 29.55 0.57 -3.05 16
2 C -0.17 -3.40 11.68 -37.12 -0.43 -3.84 16
3 C 0.19 3.91 4.49 -6.83 -0.03 3.88 16
4 N -0.46 -11.25 2.16 -117.93 -0.25 -11.50 16
5 C -0.32 -8.99 9.35 -14.93 -0.14 -9.13 16
6 H 0.11 3.45 7.88 -52.48 -0.41 3.03 16
7 C 0.06 1.69 5.39 -17.46 -0.09 1.60 16
8 N -0.86 -25.02 13.96 55.50 0.77 -24.25 16
9 Si 0.87 20.07 24.81 -169.99 -4.22 15.85 16
10 H -0.27 -5.86 6.73 56.52 0.38 -5.48 16
11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16
12 H -0.26 -5.80 7.10 56.52 0.40 -5.40 16
13 C 0.47 10.99 6.67 -10.99 -0.07 10.92 16
14 O -0.54 -14.64 16.01 5.55 0.09 -14.55 16
15 C 0.07 1.23 2.15 -68.87 -0.15 1.09 16
16 H 0.06 0.92 5.81 -51.93 -0.30 0.62 16
17 C -0.14 -2.18 9.31 37.16 0.35 -1.83 16
18 N -0.64 -10.63 6.34 -100.96 -0.64 -11.27 16
19 C 0.02 0.24 6.01 -67.71 -0.41 -0.16 16
20 C -0.17 -1.93 10.46 -26.69 -0.28 -2.21 16
21 C -0.20 -2.22 10.34 -26.69 -0.28 -2.49 16
22 H 0.21 2.69 7.80 -54.08 -0.42 2.27 16
23 H 0.09 1.81 2.76 -51.93 -0.14 1.66 16
24 H 0.09 1.52 5.64 -51.92 -0.29 1.22 16
25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16
26 H 0.06 1.03 5.56 -51.93 -0.29 0.74 16
27 H 0.06 0.79 8.04 -51.93 -0.42 0.38 16
28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
29 H 0.35 6.36 7.84 -39.29 -0.31 6.05 16
30 H 0.10 1.19 7.60 -51.93 -0.39 0.79 16
31 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16
32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16
33 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16
34 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16
LS Contribution 287.22 15.07 4.33 4.33
Total: -1.00 -31.60 287.22 -5.14 -36.74
By element:
Atomic # 1 Polarization: 14.13 SS G_CDS: -4.25 Total: 9.88 kcal
Atomic # 6 Polarization: -4.27 SS G_CDS: -0.97 Total: -5.23 kcal
Atomic # 7 Polarization: -46.90 SS G_CDS: -0.12 Total: -47.02 kcal
Atomic # 8 Polarization: -14.64 SS G_CDS: 0.09 Total: -14.55 kcal
Atomic # 14 Polarization: 20.07 SS G_CDS: -4.22 Total: 15.85 kcal
Total LS contribution 4.33 Total: 4.33 kcal
Total: -31.60 -5.14 -36.74 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000383045097.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.841 kcal
(2) G-P(sol) polarization free energy of solvation -31.601 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.240 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.140 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.741 kcal
(6) G-S(sol) free energy of system = (1) + (5) 72.100 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds