Wall clock time and date at job start Mon Mar 30 2020 03:02:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.31005 * 120.07076 * 2 1
4 4 C 1.33027 * 120.85777 * 180.02562 * 3 2 1
5 5 C 1.35597 * 120.96115 * 359.72201 * 4 3 2
6 6 N 1.35936 * 120.10327 * 0.55250 * 5 4 3
7 7 C 1.46505 * 120.42514 * 179.72598 * 6 5 4
8 8 C 1.52997 * 109.47212 * 269.72790 * 7 6 5
9 9 C 1.52992 * 109.47482 * 179.97438 * 8 7 6
10 10 C 1.52997 * 109.47482 * 179.97438 * 9 8 7
11 11 C 1.50701 * 109.47212 * 180.02562 * 10 9 8
12 12 H 1.07998 * 120.00129 * 359.97438 * 11 10 9
13 13 C 1.37880 * 119.99861 * 180.02562 * 11 10 9
14 14 N 1.31517 * 120.00050 * 180.02562 * 13 11 10
15 15 Si 1.86798 * 120.00180 * 359.97438 * 13 11 10
16 16 H 1.48496 * 109.47117 * 90.00278 * 15 13 11
17 17 H 1.48501 * 109.47010 * 210.00349 * 15 13 11
18 18 H 1.48506 * 109.47147 * 329.99935 * 15 13 11
19 19 C 1.35056 * 119.15163 * 359.45784 * 6 5 4
20 20 O 1.21979 * 120.46593 * 180.25118 * 19 6 5
21 21 H 1.09005 * 109.47300 * 269.97870 * 1 2 3
22 22 H 1.08994 * 109.47532 * 29.98480 * 1 2 3
23 23 H 1.09007 * 109.47129 * 149.98334 * 1 2 3
24 24 H 1.07995 * 119.51519 * 179.97438 * 4 3 2
25 25 H 1.07993 * 119.94609 * 180.30942 * 5 4 3
26 26 H 1.09002 * 109.47068 * 29.72850 * 7 6 5
27 27 H 1.09001 * 109.47372 * 149.72937 * 7 6 5
28 28 H 1.09002 * 109.47153 * 300.00008 * 8 7 6
29 29 H 1.08998 * 109.47533 * 59.99637 * 8 7 6
30 30 H 1.09002 * 109.47103 * 300.00247 * 9 8 7
31 31 H 1.09001 * 109.47066 * 60.00169 * 9 8 7
32 32 H 1.09002 * 109.47153 * 300.00216 * 10 9 8
33 33 H 1.09001 * 109.47289 * 60.00300 * 10 9 8
34 34 H 0.97000 * 120.00500 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.1634 1.1337 0.0000
4 6 3.4935 1.1520 -0.0005
5 6 4.2070 -0.0011 0.0046
6 7 3.5658 -1.1997 -0.0010
7 6 4.3297 -2.4498 -0.0016
8 6 4.5951 -2.8846 -1.4442
9 6 5.3933 -4.1898 -1.4449
10 6 5.6582 -4.6250 -2.8876
11 6 6.4440 -5.9109 -2.8882
12 1 6.7266 -6.3715 -1.9531
13 6 6.8030 -6.4989 -4.0825
14 7 7.4883 -7.6214 -4.0831
15 14 6.3147 -5.7019 -5.6999
16 1 7.3797 -4.7603 -6.1291
17 1 6.1356 -6.7518 -6.7348
18 1 5.0405 -4.9602 -5.5215
19 6 2.2154 -1.2233 -0.0005
20 8 1.6155 -2.2854 -0.0008
21 1 -0.3634 -0.0004 1.0277
22 1 -0.3634 0.8900 -0.5136
23 1 -0.3634 -0.8899 -0.5141
24 1 4.0126 2.0990 -0.0009
25 1 5.2864 0.0329 0.0091
26 1 5.2788 -2.2959 0.5119
27 1 3.7599 -3.2240 0.5123
28 1 3.6460 -3.0386 -1.9578
29 1 5.1648 -2.1105 -1.9582
30 1 6.3424 -4.0355 -0.9315
31 1 4.8240 -4.9642 -0.9309
32 1 4.7089 -4.7794 -3.4006
33 1 6.2274 -3.8507 -3.4020
34 1 7.7412 -8.0349 -4.9233
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385230720.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:04
Heat of formation + Delta-G solvation = -10.753486 kcal
Electronic energy + Delta-G solvation = -16058.045173 eV
Core-core repulsion = 13376.980566 eV
Total energy + Delta-G solvation = -2681.064607 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.89012 -37.63701 -36.82865 -34.63137 -32.47265 -31.56056 -29.63221 -28.25966
-26.06386 -23.57958 -23.28314 -21.62550 -20.24587 -18.73323 -17.36464 -16.78032
-16.42426 -16.10559 -15.05319 -14.62336 -14.38736 -14.27240 -13.62607 -13.19891
-12.92191 -12.74077 -12.63384 -12.42047 -12.34236 -11.99382 -11.33415 -11.26743
-11.10117 -10.85544 -10.71711 -9.99551 -9.80412 -9.70145 -9.40018 -9.22526
-8.57148 -8.15641 -6.07650 -4.06075 0.40328 1.59960 2.28147 3.27775
3.35927 3.39933 3.44318 4.02667 4.09807 4.42369 4.45761 4.79422
4.97056 5.00241 5.09454 5.26319 5.32762 5.41496 5.49140 5.63921
5.69931 5.82256 6.01663 6.09561 6.13884 6.40206 6.53718 6.57868
6.81397 7.22585 7.36266 7.55154 7.70837 7.75300 8.49704 8.96752
9.54841 11.05791
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.039856 B = 0.004517 C = 0.004479
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 702.357976 B = 6197.382469 C = 6250.476544
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.084 4.084
2 C 0.055 3.945
3 N -0.402 5.402
4 C -0.056 4.056
5 C 0.097 3.903
6 N -0.478 5.478
7 C 0.086 3.914
8 C -0.134 4.134
9 C -0.098 4.098
10 C -0.013 4.013
11 C -0.522 4.522
12 H 0.072 0.928
13 C 0.066 3.934
14 N -0.903 5.903
15 Si 0.880 3.120
16 H -0.277 1.277
17 H -0.287 1.287
18 H -0.266 1.266
19 C 0.474 3.526
20 O -0.525 6.525
21 H 0.078 0.922
22 H 0.080 0.920
23 H 0.083 0.917
24 H 0.172 0.828
25 H 0.171 0.829
26 H 0.095 0.905
27 H 0.103 0.897
28 H 0.067 0.933
29 H 0.062 0.938
30 H 0.057 0.943
31 H 0.059 0.941
32 H 0.016 0.984
33 H 0.010 0.990
34 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.014 18.275 9.015 21.897
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.113 4.113
3 N -0.118 5.118
4 C -0.197 4.197
5 C -0.034 4.034
6 N -0.190 5.190
7 C -0.034 4.034
8 C -0.172 4.172
9 C -0.137 4.137
10 C -0.051 4.051
11 C -0.560 4.560
12 H 0.090 0.910
13 C -0.135 4.135
14 N -0.542 5.542
15 Si 0.707 3.293
16 H -0.203 1.203
17 H -0.213 1.213
18 H -0.191 1.191
19 C 0.271 3.729
20 O -0.402 6.402
21 H 0.097 0.903
22 H 0.098 0.902
23 H 0.102 0.898
24 H 0.189 0.811
25 H 0.188 0.812
26 H 0.114 0.886
27 H 0.122 0.878
28 H 0.086 0.914
29 H 0.081 0.919
30 H 0.076 0.924
31 H 0.078 0.922
32 H 0.034 0.966
33 H 0.029 0.971
34 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -8.539 18.181 8.902 21.970
hybrid contribution 0.618 -0.371 -0.954 1.196
sum -7.921 17.810 7.948 21.050
Atomic orbital electron populations
1.20470 0.86569 1.03881 1.03279 1.23142 0.98477 0.86696 1.03000
1.67476 1.09385 1.29791 1.05145 1.21904 0.89324 0.97573 1.10945
1.23157 1.00713 0.84899 0.94647 1.46103 1.08592 1.08296 1.55960
1.22394 0.96119 0.84093 1.00793 1.22057 1.01801 0.99965 0.93359
1.21397 0.98247 0.93489 1.00519 1.19563 0.96683 0.96811 0.92023
1.21137 1.34143 1.06245 0.94500 0.91003 1.25034 0.94552 0.94693
0.99194 1.69912 1.38901 1.18486 1.26922 0.86777 0.79603 0.79269
0.83633 1.20299 1.21292 1.19072 1.18350 0.81389 0.92411 0.80791
1.90972 1.66332 1.32064 1.50825 0.90301 0.90158 0.89835 0.81083
0.81193 0.88629 0.87836 0.91446 0.91893 0.92442 0.92233 0.96587
0.97127 0.92697
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.85 9.99 36.00 0.36 -0.49 16
2 C 0.05 0.69 6.86 -81.76 -0.56 0.13 16
3 N -0.40 -4.73 10.35 -9.25 -0.10 -4.82 16
4 C -0.06 -0.52 11.09 -17.98 -0.20 -0.72 16
5 C 0.10 0.87 10.37 -16.68 -0.17 0.69 16
6 N -0.48 -5.83 2.60 -119.28 -0.31 -6.14 16
7 C 0.09 1.06 5.42 -4.04 -0.02 1.04 16
8 C -0.13 -2.03 5.54 -26.74 -0.15 -2.18 16
9 C -0.10 -1.84 5.15 -26.74 -0.14 -1.98 16
10 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16
11 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16
12 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16
13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16
14 N -0.90 -27.94 13.96 55.43 0.77 -27.17 16
15 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16
16 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16
17 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16
18 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16
19 C 0.47 6.88 7.44 -14.94 -0.11 6.77 16
20 O -0.53 -9.26 15.94 4.94 0.08 -9.18 16
21 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
23 H 0.08 0.89 7.63 -51.93 -0.40 0.50 16
24 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16
25 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16
26 H 0.10 0.90 8.04 -51.93 -0.42 0.48 16
27 H 0.10 1.40 7.47 -51.93 -0.39 1.02 16
28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
31 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16
32 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16
33 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16
34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16
LS Contribution 291.30 15.07 4.39 4.39
Total: -1.00 -33.96 291.30 -6.31 -40.26
By element:
Atomic # 1 Polarization: 0.93 SS G_CDS: -4.94 Total: -4.00 kcal
Atomic # 6 Polarization: -8.99 SS G_CDS: -1.54 Total: -10.53 kcal
Atomic # 7 Polarization: -38.50 SS G_CDS: 0.37 Total: -38.13 kcal
Atomic # 8 Polarization: -9.26 SS G_CDS: 0.08 Total: -9.18 kcal
Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal
Total LS contribution 4.39 Total: 4.39 kcal
Total: -33.96 -6.31 -40.26 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385230720.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.510 kcal
(2) G-P(sol) polarization free energy of solvation -33.957 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.447 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.263 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.753 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds