Wall clock time and date at job start Mon Mar 30 2020 03:02:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 N 1.31005 * 120.07076 * 2 1
4 4 C 1.33027 * 120.85777 * 180.02562 * 3 2 1
5 5 C 1.35597 * 120.96115 * 359.72201 * 4 3 2
6 6 N 1.35936 * 120.10327 * 0.55250 * 5 4 3
7 7 C 1.46505 * 120.42514 * 179.72598 * 6 5 4
8 8 C 1.52997 * 109.47212 * 269.72790 * 7 6 5
9 9 C 1.52992 * 109.47482 * 179.97438 * 8 7 6
10 10 C 1.52997 * 109.47482 * 179.97438 * 9 8 7
11 11 C 1.50701 * 109.47212 * 180.02562 * 10 9 8
12 12 H 1.07998 * 120.00129 * 359.97438 * 11 10 9
13 13 C 1.37880 * 119.99861 * 180.02562 * 11 10 9
14 14 N 1.31517 * 120.00050 * 180.02562 * 13 11 10
15 15 Si 1.86798 * 120.00180 * 359.97438 * 13 11 10
16 16 H 1.48496 * 109.47117 * 90.00278 * 15 13 11
17 17 H 1.48501 * 109.47010 * 210.00349 * 15 13 11
18 18 H 1.48506 * 109.47147 * 329.99935 * 15 13 11
19 19 C 1.35056 * 119.15163 * 359.45784 * 6 5 4
20 20 O 1.21979 * 120.46593 * 180.25118 * 19 6 5
21 21 H 1.09005 * 109.47300 * 269.97870 * 1 2 3
22 22 H 1.08994 * 109.47532 * 29.98480 * 1 2 3
23 23 H 1.09007 * 109.47129 * 149.98334 * 1 2 3
24 24 H 1.07995 * 119.51519 * 179.97438 * 4 3 2
25 25 H 1.07993 * 119.94609 * 180.30942 * 5 4 3
26 26 H 1.09002 * 109.47068 * 29.72850 * 7 6 5
27 27 H 1.09001 * 109.47372 * 149.72937 * 7 6 5
28 28 H 1.09002 * 109.47153 * 300.00008 * 8 7 6
29 29 H 1.08998 * 109.47533 * 59.99637 * 8 7 6
30 30 H 1.09002 * 109.47103 * 300.00247 * 9 8 7
31 31 H 1.09001 * 109.47066 * 60.00169 * 9 8 7
32 32 H 1.09002 * 109.47153 * 300.00216 * 10 9 8
33 33 H 1.09001 * 109.47289 * 60.00300 * 10 9 8
34 34 H 0.97000 * 120.00500 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.1634 1.1337 0.0000
4 6 3.4935 1.1520 -0.0005
5 6 4.2070 -0.0011 0.0046
6 7 3.5658 -1.1997 -0.0010
7 6 4.3297 -2.4498 -0.0016
8 6 4.5951 -2.8846 -1.4442
9 6 5.3933 -4.1898 -1.4449
10 6 5.6582 -4.6250 -2.8876
11 6 6.4440 -5.9109 -2.8882
12 1 6.7266 -6.3715 -1.9531
13 6 6.8030 -6.4989 -4.0825
14 7 7.4883 -7.6214 -4.0831
15 14 6.3147 -5.7019 -5.6999
16 1 7.3797 -4.7603 -6.1291
17 1 6.1356 -6.7518 -6.7348
18 1 5.0405 -4.9602 -5.5215
19 6 2.2154 -1.2233 -0.0005
20 8 1.6155 -2.2854 -0.0008
21 1 -0.3634 -0.0004 1.0277
22 1 -0.3634 0.8900 -0.5136
23 1 -0.3634 -0.8899 -0.5141
24 1 4.0126 2.0990 -0.0009
25 1 5.2864 0.0329 0.0091
26 1 5.2788 -2.2959 0.5119
27 1 3.7599 -3.2240 0.5123
28 1 3.6460 -3.0386 -1.9578
29 1 5.1648 -2.1105 -1.9582
30 1 6.3424 -4.0355 -0.9315
31 1 4.8240 -4.9642 -0.9309
32 1 4.7089 -4.7794 -3.4006
33 1 6.2274 -3.8507 -3.4020
34 1 7.7412 -8.0349 -4.9233
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385230720.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:04
Heat of formation + Delta-G solvation = -33.449015 kcal
Electronic energy + Delta-G solvation = -16059.029325 eV
Core-core repulsion = 13376.980566 eV
Total energy + Delta-G solvation = -2682.048759 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-42.80878 -38.62661 -37.90098 -36.16256 -34.37225 -32.52182 -31.15983 -29.09568
-27.54848 -24.91203 -24.16597 -22.89784 -21.91348 -19.62854 -18.91968 -18.28996
-17.34486 -17.12380 -16.36992 -16.33921 -15.46974 -15.19975 -14.80429 -14.59773
-14.37337 -13.99213 -13.81813 -13.73100 -13.37446 -13.10836 -12.92678 -12.62991
-12.33906 -12.20790 -12.06324 -11.81349 -11.48333 -11.38341 -11.26843 -10.78771
-10.35926 -9.02669 -8.32053 -6.36187 -0.43052 0.68856 1.32253 1.35539
1.36556 1.46914 2.33482 2.56823 3.03373 3.19550 3.35832 3.73766
3.81615 3.89698 4.18325 4.21509 4.30918 4.39099 4.52631 4.68844
4.73938 4.75482 4.92229 4.93968 5.06216 5.08224 5.19636 5.36804
5.48895 5.54913 5.64202 5.65788 6.25661 6.65040 6.72212 6.80559
7.28865 8.84754
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.039856 B = 0.004517 C = 0.004479
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 702.357976 B = 6197.382469 C = 6250.476544
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 C 0.026 3.974
3 N -0.406 5.406
4 C -0.058 4.058
5 C 0.106 3.894
6 N -0.477 5.477
7 C 0.092 3.908
8 C -0.120 4.120
9 C -0.091 4.091
10 C -0.014 4.014
11 C -0.534 4.534
12 H 0.035 0.965
13 C 0.004 3.996
14 N -0.951 5.951
15 Si 0.950 3.050
16 H -0.260 1.260
17 H -0.285 1.285
18 H -0.254 1.254
19 C 0.458 3.542
20 O -0.576 6.576
21 H 0.087 0.913
22 H 0.093 0.907
23 H 0.069 0.931
24 H 0.210 0.790
25 H 0.219 0.781
26 H 0.137 0.863
27 H 0.084 0.916
28 H 0.041 0.959
29 H 0.083 0.917
30 H 0.071 0.929
31 H 0.045 0.955
32 H 0.008 0.992
33 H 0.024 0.976
34 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.177 21.394 8.719 24.192
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C -0.139 4.139
3 N -0.122 5.122
4 C -0.200 4.200
5 C -0.024 4.024
6 N -0.188 5.188
7 C -0.029 4.029
8 C -0.159 4.159
9 C -0.129 4.129
10 C -0.051 4.051
11 C -0.572 4.572
12 H 0.053 0.947
13 C -0.193 4.193
14 N -0.592 5.592
15 Si 0.774 3.226
16 H -0.185 1.185
17 H -0.210 1.210
18 H -0.178 1.178
19 C 0.257 3.743
20 O -0.457 6.457
21 H 0.105 0.895
22 H 0.112 0.888
23 H 0.088 0.912
24 H 0.226 0.774
25 H 0.235 0.765
26 H 0.155 0.845
27 H 0.103 0.897
28 H 0.060 0.940
29 H 0.102 0.898
30 H 0.089 0.911
31 H 0.063 0.937
32 H 0.026 0.974
33 H 0.042 0.958
34 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -7.715 21.339 8.622 24.273
hybrid contribution 0.487 -1.315 -0.788 1.609
sum -7.228 20.024 7.834 22.684
Atomic orbital electron populations
1.20468 0.85762 1.03803 1.03856 1.23244 0.99307 0.86229 1.05085
1.67513 1.10967 1.29245 1.04477 1.22645 0.88549 0.99361 1.09435
1.23933 1.02854 0.83238 0.92424 1.46129 1.08083 1.09434 1.55122
1.22292 0.97590 0.84109 0.98874 1.21832 1.00055 0.98552 0.95421
1.21232 0.99387 0.95032 0.97286 1.19543 0.95418 0.94776 0.95385
1.21531 1.34378 1.08123 0.93197 0.94706 1.26022 0.94514 0.95245
1.03520 1.70065 1.40595 1.20352 1.28170 0.85658 0.80046 0.78562
0.78371 1.18508 1.21042 1.17785 1.18737 0.82274 0.92445 0.80855
1.90935 1.67448 1.33517 1.53794 0.89457 0.88795 0.91211 0.77369
0.76461 0.84508 0.89728 0.93989 0.89833 0.91055 0.93657 0.97370
0.95756 0.92465
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.66 9.99 71.23 0.71 -0.95 16
2 C 0.03 0.65 6.86 43.45 0.30 0.95 16
3 N -0.41 -8.60 10.35 -183.17 -1.90 -10.49 16
4 C -0.06 -0.83 11.09 83.90 0.93 0.10 16
5 C 0.11 1.41 10.37 83.45 0.87 2.28 16
6 N -0.48 -10.48 2.60 -649.23 -1.69 -12.18 16
7 C 0.09 2.04 5.42 86.38 0.47 2.51 16
8 C -0.12 -3.40 5.54 30.59 0.17 -3.24 16
9 C -0.09 -3.30 5.15 30.59 0.16 -3.15 16
10 C -0.01 -0.64 4.04 29.85 0.12 -0.52 16
11 C -0.53 -30.87 9.66 25.60 0.25 -30.62 16
12 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16
13 C 0.00 0.22 5.47 84.65 0.46 0.68 16
14 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16
15 Si 0.95 44.61 27.47 68.60 1.88 46.50 16
16 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16
17 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16
18 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16
19 C 0.46 13.17 7.44 84.97 0.63 13.80 16
20 O -0.58 -21.10 15.94 -5.25 -0.08 -21.19 16
21 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16
22 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16
23 H 0.07 1.58 7.63 -2.38 -0.02 1.56 16
24 H 0.21 1.34 8.06 -2.91 -0.02 1.32 16
25 H 0.22 0.77 8.06 -2.91 -0.02 0.75 16
26 H 0.14 1.94 8.04 -2.39 -0.02 1.92 16
27 H 0.08 2.26 7.47 -2.39 -0.02 2.24 16
28 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16
29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16
30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16
31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16
32 H 0.01 0.38 7.20 -2.39 -0.02 0.36 16
33 H 0.02 1.06 7.57 -2.39 -0.02 1.04 16
34 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16
Total: -1.00 -76.89 291.30 4.59 -72.30
By element:
Atomic # 1 Polarization: 1.88 SS G_CDS: 1.02 Total: 2.90 kcal
Atomic # 6 Polarization: -23.22 SS G_CDS: 5.06 Total: -18.15 kcal
Atomic # 7 Polarization: -79.06 SS G_CDS: -3.29 Total: -82.35 kcal
Atomic # 8 Polarization: -21.10 SS G_CDS: -0.08 Total: -21.19 kcal
Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.50 kcal
Total: -76.89 4.59 -72.30 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385230720.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.848 kcal
(2) G-P(sol) polarization free energy of solvation -76.890 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.042 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.297 kcal
(6) G-S(sol) free energy of system = (1) + (5) -33.449 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds