Wall clock time and date at job start Mon Mar 30 2020 03:45:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42893 * 1
3 3 C 1.42900 * 114.00535 * 2 1
4 4 C 1.52994 * 109.47442 * 180.02562 * 3 2 1
5 5 H 1.08997 * 109.47148 * 184.99791 * 4 3 2
6 6 C 1.52996 * 109.47205 * 304.99954 * 4 3 2
7 7 N 1.46501 * 109.47370 * 64.99862 * 4 3 2
8 8 C 1.38361 * 120.00245 * 154.99856 * 7 4 3
9 9 C 1.39709 * 119.43351 * 359.72888 * 8 7 4
10 10 C 1.36566 * 119.49629 * 179.76341 * 9 8 7
11 11 C 1.41321 * 118.40489 * 0.49894 * 10 9 8
12 12 C 1.41196 * 120.56616 * 179.76524 * 11 10 9
13 13 H 1.08006 * 120.00597 * 330.34027 * 12 11 10
14 14 C 1.39878 * 120.00054 * 150.33798 * 12 11 10
15 15 N 1.30899 * 120.00362 * 161.77477 * 14 12 11
16 16 Si 1.86798 * 119.99634 * 341.77448 * 14 12 11
17 17 H 1.48504 * 109.47068 * 95.40793 * 16 14 12
18 18 H 1.48496 * 109.47143 * 215.40897 * 16 14 12
19 19 H 1.48498 * 109.47286 * 335.40826 * 16 14 12
20 20 C 1.40752 * 118.86189 * 359.74797 * 11 10 9
21 21 N 1.31486 * 120.36739 * 359.97438 * 20 11 10
22 22 H 1.08998 * 109.47855 * 180.02562 * 1 2 3
23 23 H 1.09009 * 109.47208 * 299.99941 * 1 2 3
24 24 H 1.08997 * 109.47478 * 59.99690 * 1 2 3
25 25 H 1.08999 * 109.46621 * 59.99656 * 3 2 1
26 26 H 1.09001 * 109.46534 * 300.00310 * 3 2 1
27 27 H 1.08997 * 109.47201 * 59.99869 * 6 4 3
28 28 H 1.09003 * 109.47525 * 180.02562 * 6 4 3
29 29 H 1.09001 * 109.47137 * 299.99827 * 6 4 3
30 30 H 0.97003 * 119.99536 * 334.73160 * 7 4 3
31 31 H 1.08005 * 120.24819 * 0.02562 * 9 8 7
32 32 H 1.07999 * 120.79667 * 180.22278 * 10 9 8
33 33 H 0.96999 * 120.00269 * 180.02562 * 15 14 12
34 34 H 1.07999 * 119.81400 * 179.97438 * 20 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5354 1.1845 -0.0006
5 1 3.9785 2.1764 0.0889
6 6 3.9790 0.3193 1.1806
7 7 3.9757 0.5643 -1.2527
8 6 5.2526 0.8005 -1.7303
9 6 6.1104 1.6371 -1.0119
10 6 7.3727 1.8673 -1.4796
11 6 7.7635 1.2524 -2.6905
12 6 9.0561 1.4630 -3.2183
13 1 9.5729 2.3919 -3.0270
14 6 9.6675 0.4685 -3.9888
15 7 10.6776 0.7701 -4.7648
16 14 9.0423 -1.2900 -3.9106
17 1 8.0861 -1.5254 -5.0221
18 1 10.1867 -2.2282 -4.0350
19 1 8.3572 -1.5145 -2.6124
20 6 6.8422 0.4263 -3.3613
21 7 5.6398 0.2323 -2.8658
22 1 -0.3635 -1.0276 0.0005
23 1 -0.3634 0.5139 0.8901
24 1 -0.3634 0.5139 -0.8899
25 1 1.6886 1.8463 0.8900
26 1 1.6886 1.8463 -0.8900
27 1 3.5359 -0.6725 1.0911
28 1 5.0656 0.2335 1.1805
29 1 3.6515 0.7808 2.1122
30 1 3.3732 -0.0152 -1.7449
31 1 5.7792 2.0949 -0.0914
32 1 8.0544 2.5074 -0.9393
33 1 11.1013 0.0805 -5.2994
34 1 7.1245 -0.0509 -4.2881
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000389854825.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:45:29
Heat of formation + Delta-G solvation = -14.958388 kcal
Electronic energy + Delta-G solvation = -16380.990637 eV
Core-core repulsion = 13699.743691 eV
Total energy + Delta-G solvation = -2681.246945 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.06862 -38.10267 -35.63971 -33.56725 -31.55354 -30.71638 -28.88288 -27.38155
-25.74511 -24.43898 -22.66973 -21.08803 -20.24753 -17.53196 -17.06567 -16.29487
-16.12732 -15.67961 -15.03953 -14.64781 -13.98240 -13.71159 -13.42072 -12.98589
-12.86766 -12.54751 -12.30084 -11.93926 -11.81750 -11.77353 -11.28862 -10.89545
-10.88107 -10.76467 -10.35557 -9.98147 -9.79422 -9.42129 -8.82028 -8.51711
-8.11966 -6.85294 -6.82755 -4.26821 2.56616 2.72072 3.19604 3.27184
3.38828 3.66190 4.01831 4.04455 4.64497 4.87065 5.09272 5.15000
5.22883 5.31254 5.43623 5.49731 5.53903 5.72789 5.81947 5.91155
6.14110 6.20902 6.32753 6.53089 6.56646 6.96388 7.01836 7.09818
7.35457 7.35789 7.84528 8.10060 8.36120 8.46743 8.71258 8.83954
9.53398 10.18190
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.048040 B = 0.005577 C = 0.005302
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 582.708322 B = 5019.749012 C = 5279.451703
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 O -0.384 6.384
3 C 0.055 3.945
4 C 0.167 3.833
5 H 0.085 0.915
6 C -0.164 4.164
7 N -0.735 5.735
8 C 0.283 3.717
9 C -0.190 4.190
10 C -0.136 4.136
11 C 0.010 3.990
12 C -0.446 4.446
13 H 0.089 0.911
14 C 0.084 3.916
15 N -0.816 5.816
16 Si 0.904 3.096
17 H -0.268 1.268
18 H -0.289 1.289
19 H -0.249 1.249
20 C 0.007 3.993
21 N -0.511 5.511
22 H 0.084 0.916
23 H 0.038 0.962
24 H 0.040 0.960
25 H 0.058 0.942
26 H 0.055 0.945
27 H 0.063 0.937
28 H 0.059 0.941
29 H 0.052 0.948
30 H 0.395 0.605
31 H 0.105 0.895
32 H 0.110 0.890
33 H 0.283 0.717
34 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.361 -0.094 8.972 16.934
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.302 6.302
3 C -0.023 4.023
4 C 0.060 3.940
5 H 0.103 0.897
6 C -0.224 4.224
7 N -0.373 5.373
8 C 0.050 3.950
9 C -0.214 4.214
10 C -0.162 4.162
11 C 0.004 3.996
12 C -0.476 4.476
13 H 0.107 0.893
14 C -0.133 4.133
15 N -0.441 5.441
16 Si 0.731 3.269
17 H -0.194 1.194
18 H -0.217 1.217
19 H -0.173 1.173
20 C -0.152 4.152
21 N -0.226 5.226
22 H 0.102 0.898
23 H 0.057 0.943
24 H 0.058 0.942
25 H 0.076 0.924
26 H 0.073 0.927
27 H 0.082 0.918
28 H 0.078 0.922
29 H 0.071 0.929
30 H 0.229 0.771
31 H 0.123 0.877
32 H 0.128 0.872
33 H 0.094 0.906
34 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -14.557 -0.702 8.489 16.866
hybrid contribution 0.058 -0.204 0.195 0.288
sum -14.498 -0.906 8.684 16.924
Atomic orbital electron populations
1.22719 0.81459 1.02600 0.99733 1.87931 1.19238 1.27727 1.95328
1.22891 0.93887 0.84978 1.00511 1.20713 0.90753 0.97224 0.85330
0.89691 1.22220 1.02021 1.01193 0.96919 1.43665 1.12647 1.56181
1.24853 1.17777 0.86701 0.97899 0.92582 1.20788 0.95568 1.03579
1.01420 1.21008 0.95477 1.03789 0.95971 1.18490 0.94974 0.94198
0.91932 1.19196 0.99094 1.03246 1.26051 0.89304 1.26042 0.93988
1.01545 0.91771 1.69717 1.19822 1.36083 1.18525 0.86439 0.77882
0.81338 0.81284 1.19386 1.21661 1.17291 1.22253 0.88510 1.04260
1.00134 1.66557 1.19429 1.24505 1.12072 0.89790 0.94333 0.94182
0.92434 0.92725 0.91768 0.92169 0.92869 0.77059 0.87747 0.87194
0.90631 0.85150
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.27 11.01 101.05 1.11 1.39 16
2 O -0.38 -4.69 9.55 -35.23 -0.34 -5.03 16
3 C 0.05 0.62 5.68 37.15 0.21 0.83 16
4 C 0.17 2.31 2.66 -67.93 -0.18 2.13 16
5 H 0.09 1.14 6.40 -51.93 -0.33 0.81 16
6 C -0.16 -2.21 9.20 37.16 0.34 -1.87 16
7 N -0.73 -13.09 5.20 -53.87 -0.28 -13.37 16
8 C 0.28 6.20 7.62 -155.13 -1.18 5.01 16
9 C -0.19 -4.00 8.74 -39.64 -0.35 -4.34 16
10 C -0.14 -3.15 9.88 -39.01 -0.39 -3.53 16
11 C 0.01 0.25 5.12 -106.65 -0.55 -0.30 16
12 C -0.45 -12.20 9.58 -37.85 -0.36 -12.56 16
13 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16
14 C 0.08 2.24 5.41 -17.34 -0.09 2.15 16
15 N -0.82 -22.14 13.93 55.54 0.77 -21.37 16
16 Si 0.90 21.49 24.52 -169.99 -4.17 17.33 16
17 H -0.27 -6.24 6.71 56.52 0.38 -5.86 16
18 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16
19 H -0.25 -6.22 6.86 56.52 0.39 -5.83 16
20 C 0.01 0.18 8.37 -16.75 -0.14 0.04 16
21 N -0.51 -12.61 10.37 -11.79 -0.12 -12.73 16
22 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16
23 H 0.04 0.28 8.14 -51.92 -0.42 -0.14 16
24 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16
25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
27 H 0.06 0.92 7.56 -51.93 -0.39 0.53 16
28 H 0.06 0.91 7.64 -51.93 -0.40 0.51 16
29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
30 H 0.40 7.04 8.50 -40.82 -0.35 6.69 16
31 H 0.10 1.85 6.01 -52.48 -0.32 1.54 16
32 H 0.11 2.34 8.06 -52.49 -0.42 1.91 16
33 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16
34 H 0.13 3.37 4.72 -52.49 -0.25 3.12 16
LS Contribution 281.61 15.07 4.24 4.24
Total: -1.00 -29.54 281.61 -6.05 -35.59
By element:
Atomic # 1 Polarization: 10.97 SS G_CDS: -4.58 Total: 6.39 kcal
Atomic # 6 Polarization: -9.48 SS G_CDS: -1.57 Total: -11.05 kcal
Atomic # 7 Polarization: -47.84 SS G_CDS: 0.37 Total: -47.47 kcal
Atomic # 8 Polarization: -4.69 SS G_CDS: -0.34 Total: -5.03 kcal
Atomic # 14 Polarization: 21.49 SS G_CDS: -4.17 Total: 17.33 kcal
Total LS contribution 4.24 Total: 4.24 kcal
Total: -29.54 -6.05 -35.59 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000389854825.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.630 kcal
(2) G-P(sol) polarization free energy of solvation -29.542 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.912 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.588 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.958 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds