Wall clock time and date at job start Mon Mar 30 2020 03:45:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42893 * 1
3 3 C 1.42900 * 114.00535 * 2 1
4 4 C 1.52994 * 109.47442 * 180.02562 * 3 2 1
5 5 H 1.08997 * 109.47148 * 184.99791 * 4 3 2
6 6 C 1.52996 * 109.47205 * 304.99954 * 4 3 2
7 7 N 1.46501 * 109.47370 * 64.99862 * 4 3 2
8 8 C 1.38361 * 120.00245 * 154.99856 * 7 4 3
9 9 C 1.39709 * 119.43351 * 359.72888 * 8 7 4
10 10 C 1.36566 * 119.49629 * 179.76341 * 9 8 7
11 11 C 1.41321 * 118.40489 * 0.49894 * 10 9 8
12 12 C 1.41196 * 120.56616 * 179.76524 * 11 10 9
13 13 H 1.08006 * 120.00597 * 330.34027 * 12 11 10
14 14 C 1.39878 * 120.00054 * 150.33798 * 12 11 10
15 15 N 1.30899 * 120.00362 * 161.77477 * 14 12 11
16 16 Si 1.86798 * 119.99634 * 341.77448 * 14 12 11
17 17 H 1.48504 * 109.47068 * 95.40793 * 16 14 12
18 18 H 1.48496 * 109.47143 * 215.40897 * 16 14 12
19 19 H 1.48498 * 109.47286 * 335.40826 * 16 14 12
20 20 C 1.40752 * 118.86189 * 359.74797 * 11 10 9
21 21 N 1.31486 * 120.36739 * 359.97438 * 20 11 10
22 22 H 1.08998 * 109.47855 * 180.02562 * 1 2 3
23 23 H 1.09009 * 109.47208 * 299.99941 * 1 2 3
24 24 H 1.08997 * 109.47478 * 59.99690 * 1 2 3
25 25 H 1.08999 * 109.46621 * 59.99656 * 3 2 1
26 26 H 1.09001 * 109.46534 * 300.00310 * 3 2 1
27 27 H 1.08997 * 109.47201 * 59.99869 * 6 4 3
28 28 H 1.09003 * 109.47525 * 180.02562 * 6 4 3
29 29 H 1.09001 * 109.47137 * 299.99827 * 6 4 3
30 30 H 0.97003 * 119.99536 * 334.73160 * 7 4 3
31 31 H 1.08005 * 120.24819 * 0.02562 * 9 8 7
32 32 H 1.07999 * 120.79667 * 180.22278 * 10 9 8
33 33 H 0.96999 * 120.00269 * 180.02562 * 15 14 12
34 34 H 1.07999 * 119.81400 * 179.97438 * 20 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5354 1.1845 -0.0006
5 1 3.9785 2.1764 0.0889
6 6 3.9790 0.3193 1.1806
7 7 3.9757 0.5643 -1.2527
8 6 5.2526 0.8005 -1.7303
9 6 6.1104 1.6371 -1.0119
10 6 7.3727 1.8673 -1.4796
11 6 7.7635 1.2524 -2.6905
12 6 9.0561 1.4630 -3.2183
13 1 9.5729 2.3919 -3.0270
14 6 9.6675 0.4685 -3.9888
15 7 10.6776 0.7701 -4.7648
16 14 9.0423 -1.2900 -3.9106
17 1 8.0861 -1.5254 -5.0221
18 1 10.1867 -2.2282 -4.0350
19 1 8.3572 -1.5145 -2.6124
20 6 6.8422 0.4263 -3.3613
21 7 5.6398 0.2323 -2.8658
22 1 -0.3635 -1.0276 0.0005
23 1 -0.3634 0.5139 0.8901
24 1 -0.3634 0.5139 -0.8899
25 1 1.6886 1.8463 0.8900
26 1 1.6886 1.8463 -0.8900
27 1 3.5359 -0.6725 1.0911
28 1 5.0656 0.2335 1.1805
29 1 3.6515 0.7808 2.1122
30 1 3.3732 -0.0152 -1.7449
31 1 5.7792 2.0949 -0.0914
32 1 8.0544 2.5074 -0.9393
33 1 11.1013 0.0805 -5.2994
34 1 7.1245 -0.0509 -4.2881
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000389854825.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:45:29
Heat of formation + Delta-G solvation = -35.439947 kcal
Electronic energy + Delta-G solvation = -16381.878784 eV
Core-core repulsion = 13699.743691 eV
Total energy + Delta-G solvation = -2682.135093 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.73773 -39.18097 -37.00352 -35.41784 -33.33980 -32.32477 -30.54882 -28.21452
-26.72982 -26.12728 -24.44775 -22.78335 -21.62115 -19.45617 -18.49072 -17.72138
-17.29273 -16.89707 -16.34473 -16.07405 -15.58289 -15.08028 -14.97892 -14.78461
-14.40500 -14.01300 -13.63717 -13.51854 -12.99802 -12.94461 -12.72899 -12.69510
-12.32650 -11.97605 -11.90546 -11.82923 -11.29565 -10.59169 -10.57729 -10.34208
-9.99438 -8.84141 -8.56740 -6.28035 0.69468 0.85064 1.27518 1.38470
1.46357 2.11683 2.53601 2.68661 2.92658 3.56584 3.88733 4.03371
4.18044 4.35420 4.40899 4.50381 4.56193 4.58550 4.61396 4.70206
4.78214 4.89314 4.93618 5.03094 5.11773 5.23577 5.44560 5.50266
5.55816 5.98386 6.19641 6.26302 6.54635 6.61095 6.80764 7.03672
7.70812 8.25120
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.048040 B = 0.005577 C = 0.005302
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 582.708322 B = 5019.749012 C = 5279.451703
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.410 6.410
3 C 0.059 3.941
4 C 0.157 3.843
5 H 0.097 0.903
6 C -0.158 4.158
7 N -0.727 5.727
8 C 0.300 3.700
9 C -0.186 4.186
10 C -0.130 4.130
11 C -0.016 4.016
12 C -0.475 4.475
13 H 0.063 0.937
14 C 0.053 3.947
15 N -0.854 5.854
16 Si 0.956 3.044
17 H -0.264 1.264
18 H -0.272 1.272
19 H -0.268 1.268
20 C -0.006 4.006
21 N -0.539 5.539
22 H 0.090 0.910
23 H 0.055 0.945
24 H 0.044 0.956
25 H 0.089 0.911
26 H 0.056 0.944
27 H 0.051 0.949
28 H 0.041 0.959
29 H 0.084 0.916
30 H 0.396 0.604
31 H 0.147 0.853
32 H 0.127 0.873
33 H 0.292 0.708
34 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.895 -0.064 11.049 20.188
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.329 6.329
3 C -0.018 4.018
4 C 0.051 3.949
5 H 0.115 0.885
6 C -0.217 4.217
7 N -0.364 5.364
8 C 0.064 3.936
9 C -0.209 4.209
10 C -0.157 4.157
11 C -0.022 4.022
12 C -0.507 4.507
13 H 0.081 0.919
14 C -0.161 4.161
15 N -0.482 5.482
16 Si 0.781 3.219
17 H -0.190 1.190
18 H -0.199 1.199
19 H -0.193 1.193
20 C -0.162 4.162
21 N -0.255 5.255
22 H 0.109 0.891
23 H 0.074 0.926
24 H 0.063 0.937
25 H 0.106 0.894
26 H 0.074 0.926
27 H 0.070 0.930
28 H 0.060 0.940
29 H 0.102 0.898
30 H 0.230 0.770
31 H 0.164 0.836
32 H 0.145 0.855
33 H 0.102 0.898
34 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -17.113 -0.671 10.574 20.128
hybrid contribution 0.539 -0.146 -0.242 0.608
sum -16.575 -0.817 10.333 19.549
Atomic orbital electron populations
1.22884 0.79717 1.03500 1.00819 1.87890 1.21176 1.28271 1.95573
1.22846 0.91748 0.85073 1.02086 1.21095 0.92986 0.97369 0.83416
0.88502 1.22144 1.00642 1.00808 0.98106 1.43966 1.10898 1.55596
1.25931 1.18286 0.88077 0.95910 0.91312 1.21137 0.94409 1.02862
1.02528 1.21343 0.96655 1.02675 0.95003 1.18582 0.94549 0.95681
0.93368 1.19173 1.00171 1.02997 1.28321 0.91890 1.26542 0.94103
1.03949 0.91486 1.69736 1.21261 1.37285 1.19924 0.85646 0.77714
0.78415 0.80140 1.18965 1.19860 1.19290 1.22157 0.89121 1.04718
1.00226 1.66608 1.19045 1.26165 1.13695 0.89135 0.92592 0.93692
0.89353 0.92611 0.92952 0.93983 0.89763 0.77008 0.83578 0.85462
0.89805 0.86041
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.38 11.01 113.37 1.25 1.63 16
2 O -0.41 -8.67 9.55 -148.98 -1.42 -10.10 16
3 C 0.06 1.10 5.68 71.98 0.41 1.51 16
4 C 0.16 3.72 2.66 44.99 0.12 3.84 16
5 H 0.10 2.12 6.40 -2.39 -0.02 2.10 16
6 C -0.16 -3.65 9.20 71.98 0.66 -2.99 16
7 N -0.73 -23.83 5.20 -324.36 -1.69 -25.52 16
8 C 0.30 12.49 7.62 133.32 1.02 13.51 16
9 C -0.19 -7.29 8.74 22.23 0.19 -7.10 16
10 C -0.13 -5.87 9.88 22.64 0.22 -5.65 16
11 C -0.02 -0.85 5.12 -21.18 -0.11 -0.96 16
12 C -0.48 -26.98 9.58 23.39 0.22 -26.75 16
13 H 0.06 3.76 8.06 -2.91 -0.02 3.74 16
14 C 0.05 2.90 5.41 85.23 0.46 3.36 16
15 N -0.85 -47.82 13.93 21.82 0.30 -47.51 16
16 Si 0.96 45.34 24.52 68.60 1.68 47.02 16
17 H -0.26 -12.17 6.71 99.48 0.67 -11.51 16
18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
19 H -0.27 -13.40 6.86 99.48 0.68 -12.72 16
20 C -0.01 -0.33 8.37 85.36 0.71 0.39 16
21 N -0.54 -26.17 10.37 -191.21 -1.98 -28.16 16
22 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16
23 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16
24 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16
25 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16
26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16
27 H 0.05 1.34 7.56 -2.39 -0.02 1.33 16
28 H 0.04 1.12 7.64 -2.39 -0.02 1.10 16
29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16
30 H 0.40 13.17 8.50 -92.71 -0.79 12.38 16
31 H 0.15 4.50 6.01 -2.91 -0.02 4.48 16
32 H 0.13 5.22 8.06 -2.91 -0.02 5.20 16
33 H 0.29 14.74 8.30 -92.71 -0.77 13.97 16
34 H 0.12 6.40 4.72 -2.91 -0.01 6.39 16
Total: -1.00 -64.80 281.61 2.31 -62.49
By element:
Atomic # 1 Polarization: 20.75 SS G_CDS: 0.25 Total: 21.00 kcal
Atomic # 6 Polarization: -24.39 SS G_CDS: 5.16 Total: -19.23 kcal
Atomic # 7 Polarization: -97.82 SS G_CDS: -3.37 Total: -101.19 kcal
Atomic # 8 Polarization: -8.67 SS G_CDS: -1.42 Total: -10.10 kcal
Atomic # 14 Polarization: 45.34 SS G_CDS: 1.68 Total: 47.02 kcal
Total: -64.80 2.31 -62.49 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000389854825.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.051 kcal
(2) G-P(sol) polarization free energy of solvation -64.800 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.748 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.309 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.491 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.440 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds