Wall clock time and date at job start Mon Mar 30 2020 03:34:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17394 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 N 1.46496 * 109.47525 * 4.82197 * 3 2 1
5 5 C 1.34779 * 120.00517 * 180.02562 * 4 3 2
6 6 O 1.21285 * 119.99516 * 359.97438 * 5 4 3
7 7 C 1.50694 * 120.00402 * 179.97438 * 5 4 3
8 8 N 1.46897 * 109.47194 * 179.97438 * 7 5 4
9 9 C 1.48813 * 111.18681 * 52.66331 * 8 7 5
10 10 C 1.54933 * 103.35205 * 159.50572 * 9 8 7
11 11 C 1.54594 * 102.91997 * 322.69117 * 10 9 8
12 12 H 1.09011 * 110.39051 * 262.99616 * 11 10 9
13 13 C 1.50696 * 110.30989 * 140.87684 * 11 10 9
14 14 H 1.08005 * 119.99925 * 244.28300 * 13 11 10
15 15 C 1.37874 * 120.00428 * 64.28222 * 13 11 10
16 16 N 1.31514 * 119.99877 * 0.02562 * 15 13 11
17 17 Si 1.86796 * 120.00237 * 180.02562 * 15 13 11
18 18 H 1.48505 * 109.46947 * 359.97438 * 17 15 13
19 19 H 1.48499 * 109.47600 * 119.99579 * 17 15 13
20 20 H 1.48501 * 109.47148 * 239.99858 * 17 15 13
21 21 C 1.47905 * 111.00050 * 169.99666 * 8 7 5
22 22 H 4.40634 * 5.51446 * 179.97438 * 4 1 2
23 23 H 1.09000 * 109.47163 * 244.81224 * 3 2 1
24 24 H 1.09008 * 109.47208 * 124.81612 * 3 2 1
25 25 H 0.97004 * 120.00040 * 359.97438 * 4 3 2
26 26 H 1.09000 * 109.47620 * 59.99366 * 7 5 4
27 27 H 1.09011 * 109.46935 * 299.99480 * 7 5 4
28 28 H 1.08998 * 110.51915 * 41.07024 * 9 8 7
29 29 H 1.09004 * 110.69711 * 278.02347 * 9 8 7
30 30 H 1.08999 * 110.72416 * 204.32980 * 10 9 8
31 31 H 1.08999 * 110.72531 * 81.04521 * 10 9 8
32 32 H 0.97006 * 120.00195 * 180.02562 * 16 15 13
33 33 H 1.09002 * 109.91668 * 94.80258 * 21 8 7
34 34 H 1.09002 * 109.91761 * 333.70433 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1739 0.0000 0.0000
3 6 2.6459 0.0007 0.0000
4 7 3.1350 -1.3754 -0.1161
5 6 4.4602 -1.6203 -0.1363
6 8 5.2479 -0.7013 -0.0588
7 6 4.9632 -3.0358 -0.2551
8 7 6.4322 -3.0351 -0.2552
9 6 6.9697 -2.2885 0.9144
10 6 8.4159 -2.8277 1.0492
11 6 8.2613 -4.3242 0.6935
12 1 8.1746 -4.9232 1.6001
13 6 9.4345 -4.7900 -0.1297
14 1 9.2835 -5.1194 -1.1471
15 6 10.7007 -4.7958 0.4159
16 7 10.8846 -4.3952 1.6550
17 14 12.1550 -5.3725 -0.6047
18 1 11.6849 -5.7688 -1.9565
19 1 13.1423 -4.2701 -0.7270
20 1 12.7938 -6.5378 0.0581
21 6 6.9629 -4.4099 -0.1300
22 1 -1.0498 -0.0005 0.0001
23 1 3.0091 0.4382 0.9300
24 1 3.0091 0.5876 -0.8438
25 1 2.5050 -2.1104 -0.1777
26 1 4.6003 -3.4735 -1.1851
27 1 4.5999 -3.6225 0.5887
28 1 6.3904 -2.5129 1.8100
29 1 6.9757 -1.2164 0.7175
30 1 8.7781 -2.7094 2.0705
31 1 9.0805 -2.3301 0.3430
32 1 11.7755 -4.3989 2.0388
33 1 7.1762 -4.8171 -1.1183
34 1 6.2386 -5.0422 0.3835
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000397737505.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:34:52
Heat of formation + Delta-G solvation = 29.968891 kcal
Electronic energy + Delta-G solvation = -16207.616341 eV
Core-core repulsion = 13528.317589 eV
Total energy + Delta-G solvation = -2679.298752 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.84145 -37.53259 -35.49821 -33.12617 -32.77924 -30.81299 -28.12201 -27.88107
-25.55046 -23.76727 -20.73361 -20.18665 -19.36802 -18.76899 -16.73683 -16.43683
-16.20264 -15.63474 -14.75537 -14.55125 -14.29066 -14.03632 -13.55563 -13.14611
-12.73521 -12.37893 -11.90620 -11.34681 -11.26322 -11.06510 -10.87712 -10.75666
-10.60726 -10.51134 -10.17788 -9.75325 -9.34178 -9.19690 -9.09621 -8.70103
-8.31521 -7.68202 -5.94780 -3.96299 2.12742 2.43294 2.74871 3.35198
3.36103 3.43160 3.47523 3.95346 4.50398 4.73082 4.85229 5.28533
5.37778 5.39147 5.50723 5.51753 5.52940 5.95834 6.15129 6.20317
6.29761 6.43944 6.84085 6.91749 7.16225 7.21112 7.32325 7.38396
7.52147 7.72659 7.80594 7.96631 8.09227 8.31639 8.51009 9.05068
9.66687 11.15431
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.075281 B = 0.004306 C = 0.004235
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 371.852428 B = 6500.323786 C = 6610.157156
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C -0.204 4.204
3 C 0.230 3.770
4 N -0.738 5.738
5 C 0.515 3.485
6 O -0.513 6.513
7 C 0.029 3.971
8 N -0.501 5.501
9 C 0.028 3.972
10 C -0.093 4.093
11 C 0.039 3.961
12 H 0.030 0.970
13 C -0.506 4.506
14 H 0.058 0.942
15 C 0.060 3.940
16 N -0.891 5.891
17 Si 0.891 3.109
18 H -0.273 1.273
19 H -0.285 1.285
20 H -0.286 1.286
21 C 0.044 3.956
22 H 0.221 0.779
23 H 0.091 0.909
24 H 0.092 0.908
25 H 0.402 0.598
26 H 0.099 0.901
27 H 0.058 0.942
28 H 0.020 0.980
29 H 0.092 0.908
30 H 0.057 0.943
31 H 0.061 0.939
32 H 0.258 0.742
33 H 0.073 0.927
34 H 0.020 0.980
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.353 5.074 -2.001 19.146
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.204 4.204
3 C 0.107 3.893
4 N -0.393 5.393
5 C 0.302 3.698
6 O -0.387 6.387
7 C -0.102 4.102
8 N -0.226 5.226
9 C -0.099 4.099
10 C -0.132 4.132
11 C 0.020 3.980
12 H 0.048 0.952
13 C -0.544 4.544
14 H 0.076 0.924
15 C -0.142 4.142
16 N -0.530 5.530
17 Si 0.719 3.281
18 H -0.198 1.198
19 H -0.211 1.211
20 H -0.212 1.212
21 C -0.083 4.083
22 H 0.238 0.762
23 H 0.109 0.891
24 H 0.109 0.891
25 H 0.236 0.764
26 H 0.117 0.883
27 H 0.076 0.924
28 H 0.038 0.962
29 H 0.111 0.889
30 H 0.076 0.924
31 H 0.080 0.920
32 H 0.068 0.932
33 H 0.091 0.909
34 H 0.038 0.962
Dipole moment (debyes) X Y Z Total
from point charges -17.429 6.013 -2.308 18.581
hybrid contribution -0.107 -1.044 0.273 1.084
sum -17.536 4.969 -2.035 18.340
Atomic orbital electron populations
1.24996 0.95926 0.97613 1.01099 1.23024 0.94345 1.02453 1.00596
1.18047 0.82824 0.84853 1.03539 1.46036 1.07536 1.08273 1.77420
1.20843 0.81186 0.92236 0.75512 1.90687 1.54398 1.46358 1.47277
1.22208 0.93073 0.92320 1.02635 1.64820 1.02256 1.13303 1.42192
1.23633 0.97163 0.99931 0.89192 1.22421 0.92171 0.97895 1.00674
1.19506 0.90677 0.93199 0.94592 0.95210 1.21216 0.91635 1.42834
0.98726 0.92416 1.24986 0.98857 0.95384 0.94940 1.69984 1.21994
1.47630 1.13383 0.86553 0.82787 0.78259 0.80493 1.19773 1.21093
1.21226 1.23178 0.97302 0.86841 1.01028 0.76209 0.89133 0.89055
0.76448 0.88308 0.92388 0.96209 0.88944 0.92407 0.91992 0.93203
0.90886 0.96151
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.30 19.25 29.55 0.57 -0.73 16
2 C -0.20 -1.85 13.46 -37.12 -0.50 -2.35 16
3 C 0.23 2.32 6.15 -6.83 -0.04 2.28 16
4 N -0.74 -7.99 5.54 -63.16 -0.35 -8.34 16
5 C 0.52 7.64 7.54 -10.99 -0.08 7.56 16
6 O -0.51 -9.61 13.54 5.55 0.08 -9.54 16
7 C 0.03 0.44 5.52 -4.98 -0.03 0.41 16
8 N -0.50 -10.05 5.27 -231.64 -1.22 -11.27 16
9 C 0.03 0.59 5.31 -1.74 -0.01 0.58 16
10 C -0.09 -2.30 5.75 -24.87 -0.14 -2.45 16
11 C 0.04 1.00 2.87 -90.42 -0.26 0.74 16
12 H 0.03 0.81 8.14 -51.92 -0.42 0.39 16
13 C -0.51 -14.14 8.37 -34.44 -0.29 -14.43 16
14 H 0.06 1.60 7.34 -52.48 -0.39 1.21 16
15 C 0.06 1.68 5.34 -17.82 -0.10 1.59 16
16 N -0.89 -26.10 12.63 55.43 0.70 -25.40 16
17 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16
18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16
19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
21 C 0.04 0.93 6.34 -2.75 -0.02 0.91 16
22 H 0.22 0.81 7.80 -54.10 -0.42 0.39 16
23 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16
24 H 0.09 0.94 8.14 -51.92 -0.42 0.51 16
25 H 0.40 3.31 8.45 -40.82 -0.34 2.97 16
26 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16
27 H 0.06 0.79 7.81 -51.92 -0.41 0.38 16
28 H 0.02 0.40 8.02 -51.93 -0.42 -0.02 16
29 H 0.09 2.03 6.00 -51.93 -0.31 1.72 16
30 H 0.06 1.48 8.12 -51.93 -0.42 1.06 16
31 H 0.06 1.66 7.86 -51.93 -0.41 1.25 16
32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16
33 H 0.07 1.58 7.39 -51.93 -0.38 1.20 16
34 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16
LS Contribution 290.98 15.07 4.38 4.38
Total: -1.00 -32.21 290.98 -7.04 -39.25
By element:
Atomic # 1 Polarization: 4.80 SS G_CDS: -4.72 Total: 0.08 kcal
Atomic # 6 Polarization: -4.98 SS G_CDS: -0.90 Total: -5.87 kcal
Atomic # 7 Polarization: -44.15 SS G_CDS: -0.87 Total: -45.01 kcal
Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.54 kcal
Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -32.21 -7.04 -39.25 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397737505.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.221 kcal
(2) G-P(sol) polarization free energy of solvation -32.208 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.013 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.044 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.252 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.969 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds