Wall clock time and date at job start Mon Mar 30 2020 03:34:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17394 * 1
3 3 C 1.47201 * 179.97438 * 2 1
4 4 N 1.46496 * 109.47525 * 4.82197 * 3 2 1
5 5 C 1.34779 * 120.00517 * 180.02562 * 4 3 2
6 6 O 1.21285 * 119.99516 * 359.97438 * 5 4 3
7 7 C 1.50694 * 120.00402 * 179.97438 * 5 4 3
8 8 N 1.46897 * 109.47194 * 179.97438 * 7 5 4
9 9 C 1.48813 * 111.18681 * 52.66331 * 8 7 5
10 10 C 1.54933 * 103.35205 * 159.50572 * 9 8 7
11 11 C 1.54594 * 102.91997 * 322.69117 * 10 9 8
12 12 H 1.09011 * 110.39051 * 262.99616 * 11 10 9
13 13 C 1.50696 * 110.30989 * 140.87684 * 11 10 9
14 14 H 1.08005 * 119.99925 * 244.28300 * 13 11 10
15 15 C 1.37874 * 120.00428 * 64.28222 * 13 11 10
16 16 N 1.31514 * 119.99877 * 0.02562 * 15 13 11
17 17 Si 1.86796 * 120.00237 * 180.02562 * 15 13 11
18 18 H 1.48505 * 109.46947 * 359.97438 * 17 15 13
19 19 H 1.48499 * 109.47600 * 119.99579 * 17 15 13
20 20 H 1.48501 * 109.47148 * 239.99858 * 17 15 13
21 21 C 1.47905 * 111.00050 * 169.99666 * 8 7 5
22 22 H 4.40634 * 5.51446 * 179.97438 * 4 1 2
23 23 H 1.09000 * 109.47163 * 244.81224 * 3 2 1
24 24 H 1.09008 * 109.47208 * 124.81612 * 3 2 1
25 25 H 0.97004 * 120.00040 * 359.97438 * 4 3 2
26 26 H 1.09000 * 109.47620 * 59.99366 * 7 5 4
27 27 H 1.09011 * 109.46935 * 299.99480 * 7 5 4
28 28 H 1.08998 * 110.51915 * 41.07024 * 9 8 7
29 29 H 1.09004 * 110.69711 * 278.02347 * 9 8 7
30 30 H 1.08999 * 110.72416 * 204.32980 * 10 9 8
31 31 H 1.08999 * 110.72531 * 81.04521 * 10 9 8
32 32 H 0.97006 * 120.00195 * 180.02562 * 16 15 13
33 33 H 1.09002 * 109.91668 * 94.80258 * 21 8 7
34 34 H 1.09002 * 109.91761 * 333.70433 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1739 0.0000 0.0000
3 6 2.6459 0.0007 0.0000
4 7 3.1350 -1.3754 -0.1161
5 6 4.4602 -1.6203 -0.1363
6 8 5.2479 -0.7013 -0.0588
7 6 4.9632 -3.0358 -0.2551
8 7 6.4322 -3.0351 -0.2552
9 6 6.9697 -2.2885 0.9144
10 6 8.4159 -2.8277 1.0492
11 6 8.2613 -4.3242 0.6935
12 1 8.1746 -4.9232 1.6001
13 6 9.4345 -4.7900 -0.1297
14 1 9.2835 -5.1194 -1.1471
15 6 10.7007 -4.7958 0.4159
16 7 10.8846 -4.3952 1.6550
17 14 12.1550 -5.3725 -0.6047
18 1 11.6849 -5.7688 -1.9565
19 1 13.1423 -4.2701 -0.7270
20 1 12.7938 -6.5378 0.0581
21 6 6.9629 -4.4099 -0.1300
22 1 -1.0498 -0.0005 0.0001
23 1 3.0091 0.4382 0.9300
24 1 3.0091 0.5876 -0.8438
25 1 2.5050 -2.1104 -0.1777
26 1 4.6003 -3.4735 -1.1851
27 1 4.5999 -3.6225 0.5887
28 1 6.3904 -2.5129 1.8100
29 1 6.9757 -1.2164 0.7175
30 1 8.7781 -2.7094 2.0705
31 1 9.0805 -2.3301 0.3430
32 1 11.7755 -4.3989 2.0388
33 1 7.1762 -4.8171 -1.1183
34 1 6.2386 -5.0422 0.3835
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000397737505.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:34:51
Heat of formation + Delta-G solvation = 6.094654 kcal
Electronic energy + Delta-G solvation = -16208.651606 eV
Core-core repulsion = 13528.317589 eV
Total energy + Delta-G solvation = -2680.334017 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-41.07374 -39.12772 -36.47784 -35.05419 -33.63035 -32.52346 -29.93833 -29.07021
-26.99661 -25.56618 -22.19990 -21.50648 -21.25380 -19.53395 -18.56618 -17.78894
-17.29940 -16.71390 -16.54806 -16.03160 -15.93900 -15.15084 -14.74103 -14.32290
-14.21580 -14.05961 -13.75319 -13.15387 -12.86506 -12.73286 -12.54750 -12.34217
-12.01777 -11.82890 -11.55576 -11.44344 -11.23373 -10.80140 -10.66020 -10.41511
-10.11775 -9.22440 -8.10900 -6.19314 1.40654 1.41747 1.43808 1.55460
1.59709 1.83811 2.44535 2.47591 3.19804 3.24913 3.36119 3.81718
4.14298 4.32635 4.33861 4.48128 4.51823 4.57382 4.59443 4.62952
4.96441 5.00483 5.05208 5.24893 5.32467 5.48790 5.56721 5.72318
5.86257 6.12792 6.17777 6.39247 6.54151 6.57976 6.89694 7.23926
7.47266 8.99096
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.075281 B = 0.004306 C = 0.004235
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 371.852428 B = 6500.323786 C = 6610.157156
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.248 4.248
3 C 0.232 3.768
4 N -0.717 5.717
5 C 0.516 3.484
6 O -0.560 6.560
7 C 0.027 3.973
8 N -0.517 5.517
9 C 0.047 3.953
10 C -0.087 4.087
11 C 0.030 3.970
12 H 0.004 0.996
13 C -0.523 4.523
14 H 0.057 0.943
15 C 0.007 3.993
16 N -0.923 5.923
17 Si 0.957 3.043
18 H -0.265 1.265
19 H -0.284 1.284
20 H -0.279 1.279
21 C 0.056 3.944
22 H 0.256 0.744
23 H 0.084 0.916
24 H 0.086 0.914
25 H 0.417 0.583
26 H 0.129 0.871
27 H 0.083 0.917
28 H 0.031 0.969
29 H 0.086 0.914
30 H 0.036 0.964
31 H 0.031 0.969
32 H 0.259 0.741
33 H 0.070 0.930
34 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.685 4.507 -2.935 21.373
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C -0.249 4.249
3 C 0.109 3.891
4 N -0.372 5.372
5 C 0.303 3.697
6 O -0.438 6.438
7 C -0.104 4.104
8 N -0.242 5.242
9 C -0.080 4.080
10 C -0.126 4.126
11 C 0.011 3.989
12 H 0.023 0.977
13 C -0.561 4.561
14 H 0.075 0.925
15 C -0.191 4.191
16 N -0.562 5.562
17 Si 0.782 3.218
18 H -0.189 1.189
19 H -0.210 1.210
20 H -0.205 1.205
21 C -0.071 4.071
22 H 0.272 0.728
23 H 0.102 0.898
24 H 0.104 0.896
25 H 0.254 0.746
26 H 0.147 0.853
27 H 0.100 0.900
28 H 0.049 0.951
29 H 0.104 0.896
30 H 0.055 0.945
31 H 0.050 0.950
32 H 0.068 0.932
33 H 0.089 0.911
34 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -19.825 5.425 -3.253 20.810
hybrid contribution 0.482 -0.848 0.576 1.133
sum -19.344 4.577 -2.677 20.058
Atomic orbital electron populations
1.25850 0.96633 0.95110 0.98690 1.22948 0.94386 1.04723 1.02797
1.17945 0.84041 0.84044 1.03047 1.45828 1.06483 1.09377 1.75473
1.20822 0.82047 0.91673 0.75132 1.90676 1.55828 1.47453 1.49832
1.22349 0.89712 0.93085 1.05212 1.64677 1.05852 1.12174 1.41461
1.23342 0.94790 0.99530 0.90356 1.22206 0.94124 0.97828 0.98399
1.19499 0.92582 0.92763 0.94071 0.97736 1.21578 0.92836 1.42740
0.98951 0.92500 1.25801 1.01680 0.95575 0.96037 1.70108 1.22587
1.48625 1.14896 0.85523 0.79240 0.77770 0.79231 1.18874 1.21045
1.20503 1.22919 0.95832 0.88125 1.00238 0.72822 0.89808 0.89632
0.74644 0.85299 0.89972 0.95068 0.89632 0.94496 0.94981 0.93180
0.91145 0.93518
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.64 19.25 74.32 1.43 -0.21 16
2 C -0.25 -3.98 13.46 31.13 0.42 -3.56 16
3 C 0.23 4.45 6.15 84.57 0.52 4.97 16
4 N -0.72 -14.11 5.54 -472.13 -2.61 -16.72 16
5 C 0.52 14.47 7.54 87.65 0.66 15.13 16
6 O -0.56 -20.83 13.54 -3.05 -0.04 -20.87 16
7 C 0.03 0.74 5.52 85.56 0.47 1.21 16
8 N -0.52 -20.08 5.27 -886.79 -4.67 -24.75 16
9 C 0.05 2.01 5.31 86.59 0.46 2.47 16
10 C -0.09 -4.45 5.75 31.80 0.18 -4.27 16
11 C 0.03 1.55 2.87 -10.66 -0.03 1.52 16
12 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16
13 C -0.52 -29.63 8.37 25.60 0.21 -29.42 16
14 H 0.06 3.15 7.34 -2.91 -0.02 3.13 16
15 C 0.01 0.42 5.34 84.65 0.45 0.87 16
16 N -0.92 -55.36 12.63 21.45 0.27 -55.09 16
17 Si 0.96 44.97 29.54 68.60 2.03 47.00 16
18 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16
19 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16
20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16
21 C 0.06 2.33 6.34 86.44 0.55 2.87 16
22 H 0.26 0.69 7.80 -4.43 -0.03 0.66 16
23 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16
24 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16
25 H 0.42 5.65 8.45 -92.71 -0.78 4.86 16
26 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16
27 H 0.08 1.91 7.81 -2.38 -0.02 1.89 16
28 H 0.03 1.25 8.02 -2.39 -0.02 1.23 16
29 H 0.09 3.83 6.00 -2.38 -0.01 3.81 16
30 H 0.04 1.98 8.12 -2.39 -0.02 1.96 16
31 H 0.03 1.78 7.86 -2.39 -0.02 1.76 16
32 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16
33 H 0.07 2.95 7.39 -2.39 -0.02 2.93 16
34 H 0.05 1.67 7.57 -2.39 -0.02 1.65 16
Total: -1.00 -71.03 290.98 0.61 -70.42
By element:
Atomic # 1 Polarization: 8.11 SS G_CDS: 0.31 Total: 8.42 kcal
Atomic # 6 Polarization: -13.73 SS G_CDS: 5.33 Total: -8.40 kcal
Atomic # 7 Polarization: -89.55 SS G_CDS: -7.01 Total: -96.56 kcal
Atomic # 8 Polarization: -20.83 SS G_CDS: -0.04 Total: -20.87 kcal
Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal
Total: -71.03 0.61 -70.42 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397737505.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.511 kcal
(2) G-P(sol) polarization free energy of solvation -71.027 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.484 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.417 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.095 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds