Wall clock time and date at job start Mon Mar 30 2020 03:34:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17403 * 1
3 3 C 1.47206 * 179.97438 * 2 1
4 4 N 1.46497 * 109.46887 * 240.89128 * 3 2 1
5 5 C 1.34774 * 119.99603 * 180.02562 * 4 3 2
6 6 O 1.21281 * 120.00079 * 0.02562 * 5 4 3
7 7 C 1.50700 * 119.99916 * 179.97438 * 5 4 3
8 8 N 1.46906 * 109.47059 * 180.02562 * 7 5 4
9 9 C 1.47436 * 110.99898 * 69.87536 * 8 7 5
10 10 C 1.54324 * 107.23089 * 123.25894 * 9 8 7
11 11 C 1.55140 * 103.01888 * 22.28261 * 10 9 8
12 12 H 1.08998 * 110.99225 * 82.48047 * 11 10 9
13 13 C 1.50700 * 110.98925 * 206.25481 * 11 10 9
14 14 H 1.08003 * 119.99796 * 118.54658 * 13 11 10
15 15 C 1.37874 * 120.00556 * 298.54821 * 13 11 10
16 16 N 1.31516 * 119.99369 * 359.97438 * 15 13 11
17 17 Si 1.86799 * 120.00588 * 180.02562 * 15 13 11
18 18 H 1.48495 * 109.46930 * 59.99529 * 17 15 13
19 19 H 1.48501 * 109.46989 * 179.97438 * 17 15 13
20 20 H 1.48496 * 109.46846 * 299.99905 * 17 15 13
21 21 C 1.47851 * 110.99786 * 190.72090 * 8 7 5
22 22 H 4.40644 * 5.51434 * 179.97438 * 4 1 2
23 23 H 1.09004 * 109.46733 * 120.88763 * 3 2 1
24 24 H 1.08996 * 109.46792 * 0.89433 * 3 2 1
25 25 H 0.96994 * 119.99983 * 0.02562 * 4 3 2
26 26 H 1.09003 * 109.46865 * 60.00495 * 7 5 4
27 27 H 1.08999 * 109.47499 * 300.00425 * 7 5 4
28 28 H 1.08998 * 109.88931 * 242.66034 * 9 8 7
29 29 H 1.09003 * 109.89178 * 3.85625 * 9 8 7
30 30 H 1.08995 * 110.70829 * 140.66528 * 10 9 8
31 31 H 1.08998 * 110.70384 * 263.72400 * 10 9 8
32 32 H 0.97003 * 119.99602 * 180.02562 * 16 15 13
33 33 H 1.08997 * 110.37354 * 332.46432 * 21 8 7
34 34 H 1.08994 * 110.37029 * 94.80655 * 21 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 7 3.1340 0.6728 1.2068
5 6 4.4590 0.7936 1.4216
6 8 5.2474 0.3463 0.6158
7 6 4.9611 1.4855 2.6627
8 7 6.4301 1.4872 2.6621
9 6 6.9571 2.3864 1.6193
10 6 7.8747 3.4105 2.3198
11 6 8.2649 2.6875 3.6358
12 1 9.0915 1.9963 3.4713
13 6 8.6026 3.6806 4.7177
14 1 8.0192 3.7088 5.6261
15 6 9.6564 4.5534 4.5479
16 7 10.3671 4.5188 3.4419
17 14 10.0755 5.7840 5.8893
18 1 10.4093 5.0576 7.1407
19 1 11.2412 6.6005 5.4654
20 1 8.9094 6.6718 6.1284
21 6 6.9600 1.9233 3.9717
22 1 -1.0501 0.0001 -0.0003
23 1 3.0091 0.5284 -0.8820
24 1 3.0098 -1.0267 -0.0160
25 1 2.5036 1.0308 1.8510
26 1 4.5983 0.9578 3.5448
27 1 4.5970 2.5128 2.6786
28 1 7.5298 1.8132 0.8902
29 1 6.1345 2.9030 1.1248
30 1 8.7585 3.6132 1.7149
31 1 7.3332 4.3329 2.5296
32 1 11.1087 5.1326 3.3226
33 1 6.2495 2.5850 4.4672
34 1 7.1771 1.0595 4.5999
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000397737507.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:34:53
Heat of formation + Delta-G solvation = 25.000663 kcal
Electronic energy + Delta-G solvation = -16146.230881 eV
Core-core repulsion = 13466.716690 eV
Total energy + Delta-G solvation = -2679.514191 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-39.72096 -37.63381 -35.45583 -33.15002 -32.73694 -30.77612 -28.20308 -27.89991
-25.61505 -23.83793 -20.73121 -19.87761 -19.63713 -18.71283 -16.73446 -16.50066
-15.91383 -15.74567 -14.91191 -14.56999 -14.14270 -13.87120 -13.63202 -13.35668
-12.44042 -12.25160 -12.11904 -11.78553 -11.10854 -11.03656 -10.95670 -10.79053
-10.73302 -10.49261 -10.21872 -9.64266 -9.54112 -9.23914 -9.13745 -8.81908
-8.38167 -7.59563 -6.00922 -4.05081 2.15049 2.45014 2.81474 3.31610
3.36761 3.37744 3.40102 3.97200 4.42172 4.73292 4.91986 5.30050
5.32287 5.40656 5.48164 5.53916 5.57463 5.84644 6.19707 6.25918
6.28657 6.47564 6.63873 6.84411 7.17930 7.19782 7.21052 7.40396
7.66987 7.70807 7.74407 7.88009 8.04098 8.35082 8.42599 8.96689
9.59085 11.08533
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.061713 B = 0.004301 C = 0.004192
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 453.607772 B = 6509.249098 C = 6677.293148
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C -0.203 4.203
3 C 0.230 3.770
4 N -0.740 5.740
5 C 0.516 3.484
6 O -0.513 6.513
7 C 0.035 3.965
8 N -0.518 5.518
9 C 0.049 3.951
10 C -0.119 4.119
11 C 0.049 3.951
12 H 0.038 0.962
13 C -0.517 4.517
14 H 0.055 0.945
15 C 0.064 3.936
16 N -0.887 5.887
17 Si 0.892 3.108
18 H -0.277 1.277
19 H -0.288 1.288
20 H -0.278 1.278
21 C 0.046 3.954
22 H 0.221 0.779
23 H 0.090 0.910
24 H 0.091 0.909
25 H 0.401 0.599
26 H 0.097 0.903
27 H 0.061 0.939
28 H 0.069 0.931
29 H 0.030 0.970
30 H 0.074 0.926
31 H 0.046 0.954
32 H 0.261 0.739
33 H 0.037 0.963
34 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.853 -5.794 -4.062 18.278
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.204 4.204
3 C 0.108 3.892
4 N -0.395 5.395
5 C 0.302 3.698
6 O -0.386 6.386
7 C -0.097 4.097
8 N -0.242 5.242
9 C -0.078 4.078
10 C -0.158 4.158
11 C 0.030 3.970
12 H 0.056 0.944
13 C -0.556 4.556
14 H 0.074 0.926
15 C -0.138 4.138
16 N -0.525 5.525
17 Si 0.720 3.280
18 H -0.202 1.202
19 H -0.213 1.213
20 H -0.204 1.204
21 C -0.080 4.080
22 H 0.238 0.762
23 H 0.108 0.892
24 H 0.109 0.891
25 H 0.235 0.765
26 H 0.115 0.885
27 H 0.079 0.921
28 H 0.087 0.913
29 H 0.049 0.951
30 H 0.092 0.908
31 H 0.065 0.935
32 H 0.070 0.930
33 H 0.056 0.944
34 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -15.898 -6.553 -4.864 17.870
hybrid contribution -0.691 1.726 1.098 2.159
sum -16.589 -4.827 -3.765 17.682
Atomic orbital electron populations
1.25005 0.95925 1.00312 0.98466 1.23040 0.94355 1.01005 1.01987
1.18035 0.82801 0.99152 0.89245 1.46046 1.07631 1.61466 1.24352
1.20907 0.81089 0.79494 0.88332 1.90708 1.54843 1.46818 1.46267
1.22098 0.92634 0.99413 0.95532 1.63398 1.02893 1.51887 1.06033
1.22868 0.97521 0.93397 0.94040 1.22726 0.97990 0.96160 0.98887
1.19719 0.90972 0.93565 0.92709 0.94360 1.20995 1.14582 1.17538
1.02438 0.92629 1.24972 0.95994 0.97334 0.95525 1.69964 1.19588
1.37590 1.25324 0.86668 0.77811 0.81276 0.82273 1.20239 1.21320
1.20371 1.23228 0.98454 0.97787 0.88551 0.76208 0.89197 0.89136
0.76475 0.88469 0.92117 0.91277 0.95132 0.90757 0.93519 0.92950
0.94450 0.91782
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.34 19.25 29.55 0.57 -0.77 16
2 C -0.20 -1.88 13.46 -37.12 -0.50 -2.38 16
3 C 0.23 2.38 6.15 -6.83 -0.04 2.33 16
4 N -0.74 -8.23 5.54 -63.16 -0.35 -8.58 16
5 C 0.52 7.78 7.48 -10.99 -0.08 7.70 16
6 O -0.51 -9.81 15.54 5.56 0.09 -9.72 16
7 C 0.04 0.54 5.03 -4.97 -0.03 0.51 16
8 N -0.52 -10.25 4.85 -232.69 -1.13 -11.38 16
9 C 0.05 1.03 5.65 -2.84 -0.02 1.02 16
10 C -0.12 -2.85 5.64 -24.91 -0.14 -2.99 16
11 C 0.05 1.25 2.96 -89.64 -0.27 0.99 16
12 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16
13 C -0.52 -14.11 8.55 -34.44 -0.29 -14.40 16
14 H 0.06 1.48 7.79 -52.48 -0.41 1.07 16
15 C 0.06 1.77 5.34 -17.82 -0.10 1.67 16
16 N -0.89 -25.54 12.12 55.43 0.67 -24.87 16
17 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16
18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16
20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
21 C 0.05 0.98 6.13 -2.30 -0.01 0.96 16
22 H 0.22 0.85 7.80 -54.08 -0.42 0.42 16
23 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16
24 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16
25 H 0.40 3.45 8.45 -40.82 -0.34 3.11 16
26 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16
27 H 0.06 0.87 7.96 -51.93 -0.41 0.45 16
28 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16
29 H 0.03 0.59 7.31 -51.93 -0.38 0.21 16
30 H 0.07 1.93 7.54 -51.93 -0.39 1.53 16
31 H 0.05 1.14 8.04 -51.93 -0.42 0.72 16
32 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16
33 H 0.04 0.76 7.70 -51.93 -0.40 0.36 16
34 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
LS Contribution 294.21 15.07 4.43 4.43
Total: -1.00 -31.64 294.21 -7.06 -38.70
By element:
Atomic # 1 Polarization: 5.49 SS G_CDS: -4.84 Total: 0.65 kcal
Atomic # 6 Polarization: -4.45 SS G_CDS: -0.91 Total: -5.36 kcal
Atomic # 7 Polarization: -44.03 SS G_CDS: -0.81 Total: -44.83 kcal
Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal
Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal
Total LS contribution 4.43 Total: 4.43 kcal
Total: -31.64 -7.06 -38.70 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397737507.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.698 kcal
(2) G-P(sol) polarization free energy of solvation -31.640 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.058 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.058 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.001 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds